Wall clock time and date at job start Wed Apr 1 2020 03:54:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38041 * 126.29363 * 2 1 4 4 C 1.47433 * 126.41249 * 0.02571 * 3 2 1 5 5 O 1.21603 * 120.00055 * 332.62738 * 4 3 2 6 6 N 1.34774 * 120.00046 * 152.62963 * 4 3 2 7 7 C 1.48973 * 125.82542 * 184.98358 * 6 4 3 8 8 C 1.52203 * 105.53998 * 186.89847 * 7 6 4 9 9 H 1.08993 * 110.78784 * 85.93289 * 8 7 6 10 10 C 1.56496 * 99.88379 * 329.27647 * 8 7 6 11 11 H 1.09001 * 100.31062 * 299.30441 * 10 8 7 12 12 C 1.47761 * 102.65991 * 44.60347 * 10 8 7 13 13 C 1.48802 * 108.24421 * 190.31053 * 10 8 7 14 14 H 1.08995 * 113.94110 * 208.28295 * 13 10 8 15 15 C 1.56563 * 103.73044 * 83.43669 * 13 10 8 16 16 C 1.53994 * 106.00001 * 324.34528 * 15 13 10 17 17 C 1.52309 * 119.92029 * 216.90092 * 8 7 6 18 18 H 1.09006 * 112.63591 * 315.97591 * 17 8 7 19 19 C 1.56084 * 103.54363 * 192.94234 * 17 8 7 20 20 N 1.48794 * 104.92252 * 319.96951 * 19 17 8 21 21 C 1.36933 * 122.71390 * 147.59595 * 20 19 17 22 22 H 1.07995 * 119.99825 * 199.93360 * 21 20 19 23 23 C 1.38812 * 119.99724 * 20.21433 * 21 20 19 24 24 N 1.31616 * 120.00099 * 9.53565 * 23 21 20 25 25 Si 1.86803 * 119.99725 * 189.53919 * 23 21 20 26 26 H 1.48503 * 109.46945 * 59.99916 * 25 23 21 27 27 H 1.48500 * 109.46782 * 179.97438 * 25 23 21 28 28 H 1.48493 * 109.47167 * 299.99939 * 25 23 21 29 29 C 1.41288 * 107.17330 * 179.76257 * 3 2 1 30 30 N 1.30448 * 108.02584 * 0.24160 * 29 3 2 31 31 N 1.34261 * 126.28991 * 180.18205 * 2 1 3 32 32 C 1.46501 * 125.75657 * 359.95723 * 31 2 1 33 33 H 1.08995 * 109.47677 * 89.99963 * 1 2 3 34 34 H 1.09008 * 109.46836 * 210.00161 * 1 2 3 35 35 H 1.09002 * 109.47078 * 329.99526 * 1 2 3 36 36 H 1.08995 * 110.23150 * 67.87448 * 7 6 4 37 37 H 1.08997 * 110.22763 * 305.91399 * 7 6 4 38 38 H 1.09003 * 111.07468 * 200.37575 * 12 10 8 39 39 H 1.09001 * 110.02320 * 77.36406 * 12 10 8 40 40 H 1.09004 * 110.14202 * 83.46871 * 15 13 10 41 41 H 1.09007 * 110.13950 * 205.23168 * 15 13 10 42 42 H 1.08997 * 109.46807 * 84.66635 * 16 15 13 43 43 H 1.08999 * 109.47074 * 204.66368 * 16 15 13 44 44 H 1.08993 * 110.46243 * 201.08438 * 19 17 8 45 45 H 1.09002 * 110.30754 * 78.76405 * 19 17 8 46 46 H 0.96998 * 119.99781 * 180.02562 * 24 23 21 47 47 H 1.07999 * 125.99255 * 180.23933 * 29 3 2 48 48 H 1.08991 * 109.47143 * 270.30521 * 32 31 2 49 49 H 1.09004 * 109.47003 * 30.30929 * 32 31 2 50 50 H 1.08999 * 109.47174 * 150.30931 * 32 31 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 0.0005 5 8 0.8119 2.8229 -0.4832 6 7 2.6753 3.4717 0.5371 7 6 2.3200 4.9091 0.7013 8 6 3.5918 5.5906 1.1859 9 1 4.2216 5.8778 0.3440 10 6 4.2414 4.4113 1.9835 11 1 3.4708 4.2355 2.7341 12 6 4.0606 3.2641 1.0699 13 6 5.3933 4.9502 2.7561 14 1 6.1815 4.2206 2.9418 15 6 4.7331 5.5281 4.0528 16 6 3.3756 6.1088 3.6154 17 6 3.5079 6.7183 2.2062 18 1 2.7126 7.4291 1.9815 19 6 4.9351 7.3493 2.1719 20 7 5.8634 6.1914 2.0642 21 6 7.0542 6.2577 1.3915 22 1 7.5384 5.3510 1.0602 23 6 7.6419 7.4900 1.1406 24 7 7.1597 8.5763 1.7059 25 14 9.1172 7.6063 0.0006 26 1 8.7423 7.1066 -1.3466 27 1 9.5538 9.0220 -0.1009 28 1 10.2277 6.7829 0.5426 29 6 3.6590 0.6498 0.0056 30 7 3.6341 -0.6544 0.0035 31 7 2.3016 -1.0822 -0.0034 32 6 1.8500 -2.4758 -0.0070 33 1 -0.3634 0.0000 -1.0276 34 1 -0.3633 -0.8901 0.5139 35 1 -0.3633 0.8900 0.5139 36 1 1.5276 5.0193 1.4416 37 1 2.0064 5.3312 -0.2534 38 1 4.1318 2.3191 1.6085 39 1 4.7959 3.3073 0.2664 40 1 4.5834 4.7336 4.7839 41 1 5.3594 6.3146 4.4743 42 1 2.6291 5.3148 3.5992 43 1 3.0679 6.8827 4.3186 44 1 5.1281 7.9051 3.0893 45 1 5.0401 8.0004 1.3041 46 1 7.5702 9.4374 1.5302 47 1 4.5449 1.2675 0.0107 48 1 1.7335 -2.8226 1.0197 49 1 0.8937 -2.5466 -0.5253 50 1 2.5870 -3.0953 -0.5181 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087338984.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:40 Heat of formation + Delta-G solvation = 99.644396 kcal Electronic energy + Delta-G solvation = -31686.022278 eV Core-core repulsion = 27716.526544 eV Total energy + Delta-G solvation = -3969.495734 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.68452 -42.20990 -39.83926 -37.32284 -35.05160 -34.60230 -33.03557 -32.62595 -31.65910 -31.50091 -29.28885 -28.18374 -27.61264 -27.15228 -25.39088 -23.56732 -23.10120 -22.39781 -21.67438 -21.32079 -19.98196 -19.04469 -18.36213 -18.21655 -17.44549 -16.92487 -16.75780 -16.64034 -16.09898 -16.01734 -15.94726 -15.48218 -15.09118 -14.54140 -14.40463 -14.16424 -14.09736 -14.01376 -13.72836 -13.70442 -13.42034 -13.39993 -13.11652 -13.04866 -12.91747 -12.80272 -12.57540 -12.43935 -12.31133 -12.24529 -12.05799 -11.93746 -11.83303 -11.75830 -11.20318 -10.92756 -10.62034 -10.53170 -10.41362 -10.36376 -9.81270 -9.48672 -8.66724 -7.76739 -5.13806 0.51586 1.13678 1.41698 1.49116 1.50909 1.56219 1.93422 2.30774 2.55262 3.28019 3.40402 3.41442 3.50069 3.59833 3.81926 3.88323 3.98056 4.05146 4.12672 4.26023 4.31334 4.36010 4.38898 4.40824 4.50760 4.56108 4.58500 4.63237 4.68522 4.69249 4.76441 4.86651 4.89291 4.91469 4.99821 5.04958 5.07665 5.12043 5.16649 5.25130 5.34578 5.41129 5.47737 5.50905 5.64453 5.67576 5.75156 5.88870 5.91035 6.36091 6.49954 6.55238 7.19618 7.20122 7.88264 8.49988 9.31561 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015146 B = 0.003151 C = 0.002886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.244070 B = 8884.948819 C = 9698.021260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.154 3.846 3 C -0.318 4.318 4 C 0.609 3.391 5 O -0.585 6.585 6 N -0.617 5.617 7 C 0.129 3.871 8 C -0.079 4.079 9 H 0.056 0.944 10 C -0.138 4.138 11 H 0.073 0.927 12 C 0.135 3.865 13 C 0.186 3.814 14 H 0.084 0.916 15 C -0.123 4.123 16 C -0.103 4.103 17 C -0.098 4.098 18 H 0.089 0.911 19 C 0.202 3.798 20 N -0.611 5.611 21 C -0.237 4.237 22 H 0.073 0.927 23 C -0.058 4.058 24 N -0.945 5.945 25 Si 0.960 3.040 26 H -0.284 1.284 27 H -0.301 1.301 28 H -0.277 1.277 29 C 0.080 3.920 30 N -0.322 5.322 31 N -0.360 5.360 32 C 0.084 3.916 33 H 0.095 0.905 34 H 0.106 0.894 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.059 0.941 38 H 0.099 0.901 39 H 0.065 0.935 40 H 0.082 0.918 41 H 0.044 0.956 42 H 0.075 0.925 43 H 0.064 0.936 44 H 0.006 0.994 45 H 0.028 0.972 46 H 0.244 0.756 47 H 0.200 0.800 48 H 0.096 0.904 49 H 0.117 0.883 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.354 -20.346 1.159 24.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.020 3.980 3 C -0.333 4.333 4 C 0.400 3.600 5 O -0.467 6.467 6 N -0.350 5.350 7 C 0.007 3.993 8 C -0.099 4.099 9 H 0.075 0.925 10 C -0.159 4.159 11 H 0.091 0.909 12 C 0.014 3.986 13 C 0.080 3.920 14 H 0.102 0.898 15 C -0.161 4.161 16 C -0.140 4.140 17 C -0.118 4.118 18 H 0.107 0.893 19 C 0.078 3.922 20 N -0.335 5.335 21 C -0.368 4.368 22 H 0.091 0.909 23 C -0.252 4.252 24 N -0.593 5.593 25 Si 0.790 3.210 26 H -0.211 1.211 27 H -0.227 1.227 28 H -0.203 1.203 29 C -0.107 4.107 30 N -0.142 5.142 31 N -0.140 5.140 32 C -0.055 4.055 33 H 0.114 0.886 34 H 0.125 0.875 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.077 0.923 38 H 0.117 0.883 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.063 0.937 42 H 0.093 0.907 43 H 0.083 0.917 44 H 0.024 0.976 45 H 0.046 0.954 46 H 0.053 0.947 47 H 0.217 0.783 48 H 0.114 0.886 49 H 0.136 0.864 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -14.201 -21.347 0.852 25.653 hybrid contribution 0.955 1.746 -0.780 2.137 sum -13.246 -19.601 0.072 23.657 Atomic orbital electron populations 1.20630 0.84171 1.05042 1.04848 1.21820 0.95941 0.85982 0.94283 1.19934 0.93956 0.92809 1.26563 1.17111 0.82633 0.83915 0.76351 1.90706 1.24381 1.83142 1.48432 1.49506 1.16552 1.08508 1.60439 1.21596 0.97202 0.79876 1.00632 1.21831 0.94407 0.95856 0.97768 0.92548 1.21551 1.00932 0.94423 0.98950 0.90934 1.20955 0.81942 0.98731 0.96959 1.20833 0.92972 0.88142 0.90043 0.89816 1.22922 0.96183 0.99927 0.97087 1.21925 0.96956 0.99883 0.95274 1.22291 0.98276 0.96748 0.94444 0.89305 1.21381 0.85461 0.87966 0.97414 1.45722 1.18716 1.08395 1.60708 1.19470 0.97777 0.92541 1.26984 0.90945 1.25575 1.01054 0.96284 1.02318 1.70119 1.44045 0.98093 1.47046 0.85431 0.80371 0.75862 0.79324 1.21054 1.22728 1.20327 1.24453 0.97630 0.91960 0.96649 1.77157 0.97453 1.13308 1.26233 1.48718 1.03257 1.07684 1.54328 1.22396 1.02691 0.74948 1.05470 0.88632 0.87511 0.90276 0.90691 0.92297 0.88344 0.91698 0.89987 0.93678 0.90699 0.91718 0.97632 0.95353 0.94692 0.78315 0.88552 0.86446 0.88261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.31 9.23 71.23 0.66 -0.66 16 2 C 0.15 3.27 7.00 42.14 0.29 3.56 16 3 C -0.32 -8.48 5.85 -20.15 -0.12 -8.60 16 4 C 0.61 19.03 7.69 86.67 0.67 19.70 16 5 O -0.58 -21.12 16.04 -4.04 -0.06 -21.18 16 6 N -0.62 -18.48 3.42 -821.24 -2.80 -21.28 16 7 C 0.13 3.95 6.50 85.64 0.56 4.51 16 8 C -0.08 -2.68 2.43 -10.07 -0.02 -2.71 16 9 H 0.06 2.36 7.47 -2.39 -0.02 2.35 16 10 C -0.14 -4.23 2.69 -12.55 -0.03 -4.27 16 11 H 0.07 2.05 4.42 -2.39 -0.01 2.04 16 12 C 0.14 3.72 4.96 84.08 0.42 4.13 16 13 C 0.19 6.70 4.50 44.28 0.20 6.90 16 14 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 15 C -0.12 -3.95 5.54 32.17 0.18 -3.77 16 16 C -0.10 -3.03 5.31 31.30 0.17 -2.86 16 17 C -0.10 -3.38 3.98 -9.58 -0.04 -3.42 16 18 H 0.09 2.81 8.14 -2.38 -0.02 2.79 16 19 C 0.20 9.37 3.96 87.01 0.34 9.71 16 20 N -0.61 -28.48 2.21 -658.88 -1.46 -29.93 16 21 C -0.24 -12.55 10.01 84.03 0.84 -11.71 16 22 H 0.07 3.69 7.85 -2.91 -0.02 3.67 16 23 C -0.06 -3.23 5.26 84.86 0.45 -2.79 16 24 N -0.94 -55.53 10.78 21.65 0.23 -55.29 16 25 Si 0.96 45.31 29.57 68.60 2.03 47.34 16 26 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 27 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 28 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 29 C 0.08 1.99 10.09 85.65 0.86 2.86 16 30 N -0.32 -7.90 12.50 -56.28 -0.70 -8.60 16 31 N -0.36 -6.85 3.98 -354.32 -1.41 -8.26 16 32 C 0.08 0.67 11.06 127.77 1.41 2.08 16 33 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.11 0.76 7.71 -2.38 -0.02 0.74 16 35 H 0.08 1.50 7.30 -2.39 -0.02 1.48 16 36 H 0.07 2.13 8.12 -2.39 -0.02 2.11 16 37 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.10 2.30 6.42 -2.39 -0.02 2.28 16 39 H 0.06 1.87 7.72 -2.39 -0.02 1.85 16 40 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 41 H 0.04 1.73 7.34 -2.38 -0.02 1.71 16 42 H 0.07 1.91 6.58 -2.39 -0.02 1.89 16 43 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.01 0.29 7.25 -2.39 -0.02 0.27 16 45 H 0.03 1.52 6.91 -2.39 -0.02 1.50 16 46 H 0.24 14.18 8.31 -92.71 -0.77 13.41 16 47 H 0.20 4.45 5.89 -2.91 -0.02 4.43 16 48 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 49 H 0.12 0.29 7.64 -2.38 -0.02 0.27 16 50 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 Total: -1.00 -72.37 377.92 3.61 -68.77 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 0.95 Total: 15.76 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: 6.83 Total: 12.68 kcal Atomic # 7 Polarization: -117.22 SS G_CDS: -6.14 Total: -123.36 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -0.06 Total: -21.18 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -72.37 3.61 -68.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087338984.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.410 kcal (2) G-P(sol) polarization free energy of solvation -72.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds