Wall clock time and date at job start Wed Apr 1 2020 03:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38041 * 126.29204 * 2 1 4 4 C 1.47435 * 126.41142 * 0.02937 * 3 2 1 5 5 O 1.21604 * 120.00052 * 32.45137 * 4 3 2 6 6 N 1.34774 * 119.99971 * 212.45102 * 4 3 2 7 7 C 1.48144 * 127.83932 * 175.50641 * 6 4 3 8 8 C 1.54359 * 104.62249 * 219.43246 * 7 6 4 9 9 H 1.09004 * 110.91737 * 216.48694 * 8 7 6 10 10 C 1.54162 * 105.04453 * 336.38293 * 8 7 6 11 11 H 1.08998 * 110.87564 * 239.94006 * 10 8 7 12 12 C 1.48158 * 127.83310 * 355.47548 * 6 4 3 13 13 C 1.53014 * 109.73029 * 116.60944 * 10 8 7 14 14 H 1.09000 * 109.64242 * 180.44724 * 13 10 8 15 15 C 1.53082 * 109.15641 * 300.56368 * 13 10 8 16 16 C 1.52921 * 109.99929 * 59.24580 * 15 13 10 17 17 C 1.53211 * 108.99627 * 93.56794 * 8 7 6 18 18 H 1.08998 * 110.52119 * 67.34325 * 17 8 7 19 19 N 1.47656 * 108.06555 * 188.96782 * 17 8 7 20 20 C 1.36934 * 122.04270 * 238.57709 * 19 17 8 21 21 H 1.08000 * 120.00193 * 0.02562 * 20 19 17 22 22 C 1.38816 * 120.00585 * 180.02562 * 20 19 17 23 23 N 1.31622 * 119.99486 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 120.00377 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47419 * 359.97438 * 24 22 20 26 26 H 1.48505 * 109.47168 * 119.99670 * 24 22 20 27 27 H 1.48501 * 109.46990 * 239.99701 * 24 22 20 28 28 C 1.47577 * 115.91861 * 58.60458 * 19 17 8 29 29 C 1.41281 * 107.17501 * 179.76157 * 3 2 1 30 30 N 1.30452 * 108.02217 * 0.24308 * 29 3 2 31 31 N 1.34261 * 126.29378 * 180.18454 * 2 1 3 32 32 C 1.46500 * 125.75102 * 359.97438 * 31 2 1 33 33 H 1.09003 * 109.47350 * 89.99831 * 1 2 3 34 34 H 1.09004 * 109.47309 * 209.99492 * 1 2 3 35 35 H 1.09001 * 109.47535 * 329.99335 * 1 2 3 36 36 H 1.09008 * 110.39976 * 338.21561 * 7 6 4 37 37 H 1.08997 * 110.41197 * 100.64127 * 7 6 4 38 38 H 1.08997 * 110.41167 * 259.15470 * 12 6 4 39 39 H 1.08990 * 110.41126 * 21.60477 * 12 6 4 40 40 H 1.08994 * 109.38325 * 179.40886 * 15 13 10 41 41 H 1.08996 * 109.37908 * 299.19307 * 15 13 10 42 42 H 1.09002 * 109.43831 * 120.89043 * 16 15 13 43 43 H 1.08995 * 109.44576 * 240.83346 * 16 15 13 44 44 H 0.96999 * 119.99954 * 180.02562 * 23 22 20 45 45 H 1.09002 * 109.99243 * 241.00624 * 28 19 17 46 46 H 1.09000 * 109.99521 * 119.63286 * 28 19 17 47 47 H 1.08000 * 125.99262 * 180.28197 * 29 3 2 48 48 H 1.09004 * 109.47204 * 270.25834 * 32 31 2 49 49 H 1.08991 * 109.47674 * 30.26431 * 32 31 2 50 50 H 1.09007 * 109.46936 * 150.26758 * 32 31 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8857 2.5203 0.0006 5 8 0.8567 2.8364 0.5662 6 7 2.6255 3.4567 -0.6257 7 6 2.3073 4.8915 -0.8119 8 6 2.7821 5.2132 -2.2450 9 1 3.2007 6.2182 -2.2999 10 6 3.8556 4.1521 -2.5585 11 1 4.8150 4.6222 -2.7743 12 6 3.9418 3.2847 -1.2836 13 6 3.3914 3.2765 -3.7243 14 1 4.1479 2.5218 -3.9396 15 6 2.0753 2.5924 -3.3458 16 6 1.0121 3.6441 -3.0266 17 6 1.6037 5.0468 -3.2099 18 1 0.8465 5.8083 -3.0233 19 7 2.1235 5.1444 -4.5885 20 6 1.6711 6.0894 -5.4703 21 1 0.9112 6.7933 -5.1646 22 6 2.1892 6.1426 -6.7570 23 7 3.1156 5.2851 -7.1294 24 14 1.5725 7.4321 -7.9596 25 1 0.5384 8.2696 -7.3003 26 1 2.7056 8.2907 -8.3888 27 1 0.9829 6.7609 -9.1458 28 6 3.1599 4.1610 -4.9583 29 6 3.6589 0.6499 0.0056 30 7 3.6340 -0.6543 0.0035 31 7 2.3017 -1.0821 -0.0035 32 6 1.8501 -2.4758 -0.0074 33 1 -0.3634 0.0000 -1.0277 34 1 -0.3634 -0.8901 0.5138 35 1 -0.3634 0.8899 0.5139 36 1 1.2338 5.0576 -0.7209 37 1 2.8494 5.4984 -0.0867 38 1 4.7410 3.6418 -0.6342 39 1 4.1021 2.2389 -1.5455 40 1 1.7358 1.9757 -4.1779 41 1 2.2336 1.9630 -2.4701 42 1 0.1634 3.5176 -3.6988 43 1 0.6798 3.5229 -1.9956 44 1 3.4780 5.3225 -8.0284 45 1 4.0827 4.6753 -5.2267 46 1 2.8147 3.5522 -5.7939 47 1 4.5448 1.2677 0.0114 48 1 1.7340 -2.8230 1.0193 49 1 0.8936 -2.5464 -0.5252 50 1 2.5869 -3.0950 -0.5192 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087338985.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:45 Heat of formation + Delta-G solvation = 87.911643 kcal Electronic energy + Delta-G solvation = -32670.251447 eV Core-core repulsion = 28700.246942 eV Total energy + Delta-G solvation = -3970.004504 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.67195 -40.69647 -38.23652 -35.60293 -33.86658 -32.94083 -32.17524 -31.61894 -30.59543 -29.71151 -27.77284 -27.27414 -26.90186 -25.16718 -24.03614 -21.97804 -21.86105 -20.99432 -20.82640 -20.27302 -18.93031 -17.40941 -17.12160 -16.61270 -16.04269 -15.94509 -15.78845 -15.22342 -14.66057 -14.49246 -14.37048 -14.04448 -13.76604 -13.43035 -13.34946 -13.18235 -12.88495 -12.76019 -12.61583 -12.33160 -12.30397 -12.15558 -11.94411 -11.77475 -11.42645 -11.29493 -11.13217 -10.96768 -10.93199 -10.78774 -10.53581 -10.41607 -10.10141 -9.84885 -9.63644 -9.60495 -9.49964 -9.24043 -9.16066 -8.66881 -8.44712 -8.32457 -6.78749 -5.61601 -2.97877 1.47385 2.16813 2.17911 3.14561 3.41834 3.48105 3.48228 3.49987 4.26722 4.41234 4.52049 4.71577 4.80547 4.83421 4.90145 5.00205 5.08433 5.21972 5.22691 5.35005 5.38142 5.47298 5.50080 5.58488 5.66097 5.70068 5.70875 5.80033 5.86155 5.87157 5.94001 6.08095 6.17242 6.19833 6.26491 6.31334 6.35636 6.47021 6.52473 6.63623 6.69126 6.78360 6.85560 6.96103 7.05996 7.12495 7.43142 7.69180 7.75733 7.83026 7.95646 8.37236 8.43338 9.31235 9.92465 10.46912 11.43584 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.019012 B = 0.003339 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.416128 B = 8384.702725 C = 8624.934481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.150 3.850 3 C -0.284 4.284 4 C 0.619 3.381 5 O -0.554 6.554 6 N -0.606 5.606 7 C 0.113 3.887 8 C -0.108 4.108 9 H 0.085 0.915 10 C -0.080 4.080 11 H 0.082 0.918 12 C 0.097 3.903 13 C -0.108 4.108 14 H 0.061 0.939 15 C -0.097 4.097 16 C -0.127 4.127 17 C 0.182 3.818 18 H 0.065 0.935 19 N -0.601 5.601 20 C -0.230 4.230 21 H 0.074 0.926 22 C -0.010 4.010 23 N -0.923 5.923 24 Si 0.907 3.093 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.293 1.293 28 C 0.205 3.795 29 C 0.081 3.919 30 N -0.300 5.300 31 N -0.365 5.365 32 C 0.097 3.903 33 H 0.085 0.915 34 H 0.071 0.929 35 H 0.107 0.893 36 H 0.082 0.918 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.046 0.954 41 H 0.047 0.953 42 H 0.051 0.949 43 H 0.052 0.948 44 H 0.249 0.751 45 H 0.048 0.952 46 H 0.049 0.951 47 H 0.190 0.810 48 H 0.077 0.923 49 H 0.089 0.911 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.001 -12.493 15.249 19.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.018 3.982 3 C -0.299 4.299 4 C 0.409 3.591 5 O -0.433 6.433 6 N -0.338 5.338 7 C -0.009 4.009 8 C -0.129 4.129 9 H 0.103 0.897 10 C -0.100 4.100 11 H 0.100 0.900 12 C -0.026 4.026 13 C -0.128 4.128 14 H 0.079 0.921 15 C -0.135 4.135 16 C -0.167 4.167 17 C 0.074 3.926 18 H 0.083 0.917 19 N -0.324 5.324 20 C -0.360 4.360 21 H 0.092 0.908 22 C -0.205 4.205 23 N -0.572 5.572 24 Si 0.738 3.262 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.220 1.220 28 C 0.081 3.919 29 C -0.106 4.106 30 N -0.119 5.119 31 N -0.145 5.145 32 C -0.044 4.044 33 H 0.104 0.896 34 H 0.090 0.910 35 H 0.126 0.874 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.059 0.941 45 H 0.066 0.934 46 H 0.067 0.933 47 H 0.206 0.794 48 H 0.095 0.905 49 H 0.108 0.892 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.119 -13.619 15.390 20.551 hybrid contribution -0.504 1.258 -0.859 1.605 sum -0.385 -12.361 14.531 19.081 Atomic orbital electron populations 1.20698 0.86325 1.05077 1.04115 1.21402 0.94733 0.86209 0.95829 1.19882 0.92957 0.93423 1.23625 1.16655 0.82298 0.82910 0.77239 1.90722 1.25291 1.81711 1.45604 1.48678 1.20953 1.09549 1.54635 1.22407 1.01749 0.80170 0.96619 1.22730 0.97980 0.98873 0.93311 0.89708 1.21982 0.98851 0.95478 0.93640 0.89954 1.22753 0.84562 1.01284 0.94047 1.21824 0.96237 0.97582 0.97107 0.92097 1.21357 0.95603 0.97242 0.99304 1.22046 0.97959 0.97055 0.99628 1.20527 0.92465 0.94385 0.85243 0.91727 1.44605 1.44492 1.36022 1.07282 1.19334 1.17011 1.07587 0.92025 0.90783 1.24769 0.99124 0.99183 0.97448 1.70044 1.31039 1.37814 1.18295 0.86109 0.77816 0.80885 0.81353 1.20636 1.21925 1.21981 1.21051 0.92057 0.88812 0.90001 1.24120 0.97255 0.91823 0.97382 1.77167 0.95996 1.13244 1.25528 1.48294 1.04079 1.06229 1.55915 1.21929 1.01351 0.77502 1.03604 0.89608 0.90975 0.87450 0.90005 0.91858 0.91511 0.90074 0.93551 0.93414 0.93061 0.92928 0.94052 0.93401 0.93336 0.79361 0.90456 0.89206 0.88847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.02 9.66 36.01 0.35 -0.67 16 2 C 0.15 1.83 7.00 -81.60 -0.57 1.26 16 3 C -0.28 -3.92 4.87 -105.07 -0.51 -4.43 16 4 C 0.62 9.59 5.83 -12.52 -0.07 9.52 16 5 O -0.55 -9.94 15.60 5.27 0.08 -9.86 16 6 N -0.61 -8.71 1.73 -170.55 -0.29 -9.00 16 7 C 0.11 1.65 5.77 -2.43 -0.01 1.64 16 8 C -0.11 -1.78 3.37 -89.19 -0.30 -2.08 16 9 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 10 C -0.08 -1.26 3.19 -89.25 -0.28 -1.54 16 11 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 12 C 0.10 1.24 4.64 -2.38 -0.01 1.22 16 13 C -0.11 -1.98 2.71 -90.27 -0.24 -2.22 16 14 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 15 C -0.10 -1.75 5.07 -26.73 -0.14 -1.88 16 16 C -0.13 -2.40 5.29 -26.60 -0.14 -2.54 16 17 C 0.18 3.62 3.02 -67.02 -0.20 3.42 16 18 H 0.06 1.30 8.02 -51.93 -0.42 0.89 16 19 N -0.60 -14.54 2.87 -163.26 -0.47 -15.01 16 20 C -0.23 -6.23 9.99 -15.06 -0.15 -6.38 16 21 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 22 C -0.01 -0.27 5.47 -17.43 -0.10 -0.37 16 23 N -0.92 -26.51 9.76 55.49 0.54 -25.97 16 24 Si 0.91 21.99 29.55 -169.99 -5.02 16.96 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 27 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 28 C 0.20 4.82 4.36 -3.15 -0.01 4.80 16 29 C 0.08 1.02 10.01 -16.98 -0.17 0.85 16 30 N -0.30 -3.87 12.50 30.86 0.39 -3.48 16 31 N -0.37 -4.07 3.98 -63.34 -0.25 -4.32 16 32 C 0.10 0.62 11.06 59.85 0.66 1.28 16 33 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.07 0.49 7.71 -51.93 -0.40 0.09 16 35 H 0.11 1.26 6.51 -51.93 -0.34 0.92 16 36 H 0.08 1.28 7.01 -51.92 -0.36 0.92 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 39 H 0.08 1.01 4.67 -51.93 -0.24 0.77 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.05 0.80 4.56 -51.93 -0.24 0.56 16 42 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 43 H 0.05 0.95 5.07 -51.93 -0.26 0.69 16 44 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 45 H 0.05 1.25 7.25 -51.93 -0.38 0.88 16 46 H 0.05 1.31 7.21 -51.93 -0.37 0.93 16 47 H 0.19 1.90 6.58 -52.49 -0.35 1.56 16 48 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 49 H 0.09 0.39 7.64 -51.93 -0.40 -0.01 16 50 H 0.09 0.53 8.14 -51.92 -0.42 0.11 16 LS Contribution 368.38 15.07 5.55 5.55 Total: -1.00 -33.05 368.38 -8.91 -41.96 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -7.53 Total: 1.29 kcal Atomic # 6 Polarization: 3.79 SS G_CDS: -1.91 Total: 1.88 kcal Atomic # 7 Polarization: -57.70 SS G_CDS: -0.09 Total: -57.79 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: 0.08 Total: -9.86 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.05 -8.91 -41.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087338985.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.873 kcal (2) G-P(sol) polarization free energy of solvation -33.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds