Wall clock time and date at job start Wed Apr 1 2020 03:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38041 * 126.29204 * 2 1 4 4 C 1.47435 * 126.41142 * 0.02937 * 3 2 1 5 5 O 1.21604 * 120.00052 * 32.45137 * 4 3 2 6 6 N 1.34774 * 119.99971 * 212.45102 * 4 3 2 7 7 C 1.48144 * 127.83932 * 175.50641 * 6 4 3 8 8 C 1.54359 * 104.62249 * 219.43246 * 7 6 4 9 9 H 1.09004 * 110.91737 * 216.48694 * 8 7 6 10 10 C 1.54162 * 105.04453 * 336.38293 * 8 7 6 11 11 H 1.08998 * 110.87564 * 239.94006 * 10 8 7 12 12 C 1.48158 * 127.83310 * 355.47548 * 6 4 3 13 13 C 1.53014 * 109.73029 * 116.60944 * 10 8 7 14 14 H 1.09000 * 109.64242 * 180.44724 * 13 10 8 15 15 C 1.53082 * 109.15641 * 300.56368 * 13 10 8 16 16 C 1.52921 * 109.99929 * 59.24580 * 15 13 10 17 17 C 1.53211 * 108.99627 * 93.56794 * 8 7 6 18 18 H 1.08998 * 110.52119 * 67.34325 * 17 8 7 19 19 N 1.47656 * 108.06555 * 188.96782 * 17 8 7 20 20 C 1.36934 * 122.04270 * 238.57709 * 19 17 8 21 21 H 1.08000 * 120.00193 * 0.02562 * 20 19 17 22 22 C 1.38816 * 120.00585 * 180.02562 * 20 19 17 23 23 N 1.31622 * 119.99486 * 359.97438 * 22 20 19 24 24 Si 1.86792 * 120.00377 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47419 * 359.97438 * 24 22 20 26 26 H 1.48505 * 109.47168 * 119.99670 * 24 22 20 27 27 H 1.48501 * 109.46990 * 239.99701 * 24 22 20 28 28 C 1.47577 * 115.91861 * 58.60458 * 19 17 8 29 29 C 1.41281 * 107.17501 * 179.76157 * 3 2 1 30 30 N 1.30452 * 108.02217 * 0.24308 * 29 3 2 31 31 N 1.34261 * 126.29378 * 180.18454 * 2 1 3 32 32 C 1.46500 * 125.75102 * 359.97438 * 31 2 1 33 33 H 1.09003 * 109.47350 * 89.99831 * 1 2 3 34 34 H 1.09004 * 109.47309 * 209.99492 * 1 2 3 35 35 H 1.09001 * 109.47535 * 329.99335 * 1 2 3 36 36 H 1.09008 * 110.39976 * 338.21561 * 7 6 4 37 37 H 1.08997 * 110.41197 * 100.64127 * 7 6 4 38 38 H 1.08997 * 110.41167 * 259.15470 * 12 6 4 39 39 H 1.08990 * 110.41126 * 21.60477 * 12 6 4 40 40 H 1.08994 * 109.38325 * 179.40886 * 15 13 10 41 41 H 1.08996 * 109.37908 * 299.19307 * 15 13 10 42 42 H 1.09002 * 109.43831 * 120.89043 * 16 15 13 43 43 H 1.08995 * 109.44576 * 240.83346 * 16 15 13 44 44 H 0.96999 * 119.99954 * 180.02562 * 23 22 20 45 45 H 1.09002 * 109.99243 * 241.00624 * 28 19 17 46 46 H 1.09000 * 109.99521 * 119.63286 * 28 19 17 47 47 H 1.08000 * 125.99262 * 180.28197 * 29 3 2 48 48 H 1.09004 * 109.47204 * 270.25834 * 32 31 2 49 49 H 1.08991 * 109.47674 * 30.26431 * 32 31 2 50 50 H 1.09007 * 109.46936 * 150.26758 * 32 31 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8857 2.5203 0.0006 5 8 0.8567 2.8364 0.5662 6 7 2.6255 3.4567 -0.6257 7 6 2.3073 4.8915 -0.8119 8 6 2.7821 5.2132 -2.2450 9 1 3.2007 6.2182 -2.2999 10 6 3.8556 4.1521 -2.5585 11 1 4.8150 4.6222 -2.7743 12 6 3.9418 3.2847 -1.2836 13 6 3.3914 3.2765 -3.7243 14 1 4.1479 2.5218 -3.9396 15 6 2.0753 2.5924 -3.3458 16 6 1.0121 3.6441 -3.0266 17 6 1.6037 5.0468 -3.2099 18 1 0.8465 5.8083 -3.0233 19 7 2.1235 5.1444 -4.5885 20 6 1.6711 6.0894 -5.4703 21 1 0.9112 6.7933 -5.1646 22 6 2.1892 6.1426 -6.7570 23 7 3.1156 5.2851 -7.1294 24 14 1.5725 7.4321 -7.9596 25 1 0.5384 8.2696 -7.3003 26 1 2.7056 8.2907 -8.3888 27 1 0.9829 6.7609 -9.1458 28 6 3.1599 4.1610 -4.9583 29 6 3.6589 0.6499 0.0056 30 7 3.6340 -0.6543 0.0035 31 7 2.3017 -1.0821 -0.0035 32 6 1.8501 -2.4758 -0.0074 33 1 -0.3634 0.0000 -1.0277 34 1 -0.3634 -0.8901 0.5138 35 1 -0.3634 0.8899 0.5139 36 1 1.2338 5.0576 -0.7209 37 1 2.8494 5.4984 -0.0867 38 1 4.7410 3.6418 -0.6342 39 1 4.1021 2.2389 -1.5455 40 1 1.7358 1.9757 -4.1779 41 1 2.2336 1.9630 -2.4701 42 1 0.1634 3.5176 -3.6988 43 1 0.6798 3.5229 -1.9956 44 1 3.4780 5.3225 -8.0284 45 1 4.0827 4.6753 -5.2267 46 1 2.8147 3.5522 -5.7939 47 1 4.5448 1.2677 0.0114 48 1 1.7340 -2.8230 1.0193 49 1 0.8936 -2.5464 -0.5252 50 1 2.5869 -3.0950 -0.5192 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087338985.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:44 Heat of formation + Delta-G solvation = 68.342967 kcal Electronic energy + Delta-G solvation = -32671.100008 eV Core-core repulsion = 28700.246942 eV Total energy + Delta-G solvation = -3970.853066 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.67777 -41.95184 -39.50937 -37.07339 -34.86983 -34.55691 -33.31547 -32.87645 -31.87958 -31.57659 -28.90799 -28.46094 -27.69285 -26.81984 -25.38085 -23.62456 -23.13521 -22.29723 -22.16587 -21.35297 -19.95305 -19.10292 -18.35022 -17.98271 -17.40469 -17.01949 -16.69938 -16.52018 -16.29210 -16.06544 -15.62232 -15.27374 -15.18144 -14.44779 -14.29860 -14.13564 -14.06229 -13.93177 -13.71216 -13.61698 -13.40557 -13.31192 -13.23568 -13.05946 -12.97846 -12.80083 -12.78369 -12.54803 -12.46824 -12.18704 -12.04636 -11.98252 -11.88301 -11.72216 -11.13390 -10.90869 -10.79381 -10.73436 -10.47569 -10.33828 -9.69944 -9.40542 -8.79245 -7.72175 -5.10012 0.57268 1.21891 1.44542 1.46609 1.47411 1.56985 2.05565 2.40620 2.52895 3.37944 3.45999 3.55662 3.61993 3.68045 3.85595 3.88083 4.01406 4.06393 4.21813 4.31181 4.32421 4.38543 4.40278 4.44069 4.47378 4.54755 4.61337 4.62219 4.68097 4.70707 4.75811 4.85021 4.90120 4.92842 4.97543 5.02719 5.08356 5.11073 5.16259 5.24216 5.34165 5.45381 5.46998 5.51364 5.63142 5.64162 5.81469 5.92604 5.94598 6.31956 6.55745 6.70846 7.22099 7.29379 7.92773 8.43053 9.30409 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.019012 B = 0.003339 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.416128 B = 8384.702725 C = 8624.934481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.147 3.853 3 C -0.313 4.313 4 C 0.618 3.382 5 O -0.586 6.586 6 N -0.607 5.607 7 C 0.121 3.879 8 C -0.101 4.101 9 H 0.083 0.917 10 C -0.078 4.078 11 H 0.091 0.909 12 C 0.106 3.894 13 C -0.100 4.100 14 H 0.077 0.923 15 C -0.088 4.088 16 C -0.116 4.116 17 C 0.173 3.827 18 H 0.056 0.944 19 N -0.615 5.615 20 C -0.240 4.240 21 H 0.075 0.925 22 C -0.065 4.065 23 N -0.949 5.949 24 Si 0.968 3.032 25 H -0.269 1.269 26 H -0.293 1.293 27 H -0.298 1.298 28 C 0.218 3.782 29 C 0.082 3.918 30 N -0.321 5.321 31 N -0.362 5.362 32 C 0.085 3.915 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.069 0.931 37 H 0.092 0.908 38 H 0.104 0.896 39 H 0.089 0.911 40 H 0.029 0.971 41 H 0.068 0.932 42 H 0.027 0.973 43 H 0.063 0.937 44 H 0.242 0.758 45 H 0.016 0.984 46 H 0.003 0.997 47 H 0.210 0.790 48 H 0.095 0.905 49 H 0.112 0.888 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.480 -13.552 17.341 22.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.014 3.986 3 C -0.328 4.328 4 C 0.410 3.590 5 O -0.467 6.467 6 N -0.339 5.339 7 C -0.002 4.002 8 C -0.122 4.122 9 H 0.102 0.898 10 C -0.098 4.098 11 H 0.109 0.891 12 C -0.016 4.016 13 C -0.119 4.119 14 H 0.095 0.905 15 C -0.125 4.125 16 C -0.155 4.155 17 C 0.067 3.933 18 H 0.075 0.925 19 N -0.339 5.339 20 C -0.369 4.369 21 H 0.093 0.907 22 C -0.257 4.257 23 N -0.599 5.599 24 Si 0.798 3.202 25 H -0.194 1.194 26 H -0.220 1.220 27 H -0.225 1.225 28 C 0.094 3.906 29 C -0.104 4.104 30 N -0.140 5.140 31 N -0.141 5.141 32 C -0.055 4.055 33 H 0.108 0.892 34 H 0.123 0.877 35 H 0.105 0.895 36 H 0.087 0.913 37 H 0.110 0.890 38 H 0.122 0.878 39 H 0.108 0.892 40 H 0.048 0.952 41 H 0.087 0.913 42 H 0.046 0.954 43 H 0.081 0.919 44 H 0.052 0.948 45 H 0.034 0.966 46 H 0.022 0.978 47 H 0.226 0.774 48 H 0.114 0.886 49 H 0.130 0.870 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.601 -14.698 17.517 22.874 hybrid contribution -0.740 1.529 -1.508 2.271 sum -0.138 -13.169 16.009 20.730 Atomic orbital electron populations 1.20720 0.84999 1.05675 1.04514 1.21745 0.95688 0.86340 0.94850 1.19908 0.94036 0.92845 1.25983 1.16905 0.81768 0.83584 0.76768 1.90706 1.26678 1.82277 1.47082 1.48718 1.21469 1.09256 1.54443 1.22318 1.01353 0.80963 0.95587 1.22540 0.96603 0.99359 0.93715 0.89839 1.21956 0.98674 0.95186 0.93954 0.89072 1.22806 0.84706 1.01243 0.92853 1.21701 0.96938 0.97417 0.95856 0.90463 1.21268 0.95010 0.96834 0.99418 1.21901 0.97375 0.96724 0.99532 1.20760 0.93815 0.94702 0.84047 0.92546 1.44844 1.44686 1.35633 1.08771 1.19671 1.16641 1.07871 0.92760 0.90719 1.25504 0.99848 1.01287 0.99109 1.70278 1.32226 1.39292 1.18084 0.85146 0.77344 0.78691 0.78996 1.19386 1.22024 1.22520 1.20634 0.90202 0.88504 0.91276 1.24420 0.97425 0.91877 0.96719 1.77125 0.97214 1.13523 1.26185 1.48649 1.03393 1.07500 1.54568 1.22348 1.02560 0.75269 1.05293 0.89188 0.87709 0.89522 0.91292 0.89029 0.87770 0.89237 0.95240 0.91315 0.95418 0.91862 0.94816 0.96559 0.97832 0.77394 0.88637 0.86969 0.88210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.78 9.66 71.24 0.69 -1.09 16 2 C 0.15 3.27 7.00 42.14 0.29 3.57 16 3 C -0.31 -7.95 4.87 -20.15 -0.10 -8.05 16 4 C 0.62 17.98 5.83 86.67 0.51 18.48 16 5 O -0.59 -20.42 15.60 -4.04 -0.06 -20.49 16 6 N -0.61 -15.86 1.73 -811.76 -1.40 -17.27 16 7 C 0.12 3.24 5.77 86.52 0.50 3.74 16 8 C -0.10 -3.21 3.37 -9.87 -0.03 -3.25 16 9 H 0.08 2.71 8.14 -2.39 -0.02 2.69 16 10 C -0.08 -2.29 3.19 -9.91 -0.03 -2.32 16 11 H 0.09 2.57 8.14 -2.39 -0.02 2.55 16 12 C 0.11 2.33 4.64 86.55 0.40 2.73 16 13 C -0.10 -3.59 2.71 -10.57 -0.03 -3.62 16 14 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 15 C -0.09 -3.10 5.07 30.60 0.16 -2.95 16 16 C -0.12 -4.38 5.29 30.68 0.16 -4.22 16 17 C 0.17 6.95 3.02 44.95 0.14 7.08 16 18 H 0.06 2.32 8.02 -2.39 -0.02 2.30 16 19 N -0.62 -30.64 2.87 -670.43 -1.93 -32.57 16 20 C -0.24 -13.29 9.99 84.03 0.84 -12.45 16 21 H 0.07 4.03 7.80 -2.91 -0.02 4.00 16 22 C -0.06 -3.69 5.47 84.86 0.46 -3.22 16 23 N -0.95 -56.61 9.76 21.65 0.21 -56.40 16 24 Si 0.97 46.22 29.55 68.60 2.03 48.25 16 25 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 26 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 27 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 28 C 0.22 10.63 4.36 86.37 0.38 11.01 16 29 C 0.08 1.83 10.01 85.65 0.86 2.69 16 30 N -0.32 -7.47 12.50 -56.28 -0.70 -8.17 16 31 N -0.36 -7.10 3.98 -354.31 -1.41 -8.51 16 32 C 0.08 0.81 11.06 127.77 1.41 2.23 16 33 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.10 1.09 7.71 -2.38 -0.02 1.08 16 35 H 0.09 1.95 6.51 -2.39 -0.02 1.94 16 36 H 0.07 2.06 7.01 -2.38 -0.02 2.05 16 37 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.09 1.89 4.67 -2.39 -0.01 1.87 16 40 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.07 2.17 4.56 -2.39 -0.01 2.16 16 42 H 0.03 1.14 8.14 -2.39 -0.02 1.13 16 43 H 0.06 2.27 5.07 -2.39 -0.01 2.26 16 44 H 0.24 14.16 8.31 -92.71 -0.77 13.39 16 45 H 0.02 0.89 7.25 -2.39 -0.02 0.87 16 46 H 0.00 0.20 7.21 -2.39 -0.02 0.18 16 47 H 0.21 3.45 6.58 -2.91 -0.02 3.43 16 48 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 49 H 0.11 0.58 7.64 -2.39 -0.02 0.56 16 50 H 0.10 0.86 8.14 -2.38 -0.02 0.84 16 Total: -1.00 -74.82 368.38 4.29 -70.53 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: 0.96 Total: 14.26 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: 6.60 Total: 10.37 kcal Atomic # 7 Polarization: -117.69 SS G_CDS: -5.23 Total: -122.92 kcal Atomic # 8 Polarization: -20.42 SS G_CDS: -0.06 Total: -20.49 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -74.82 4.29 -70.53 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087338985.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.870 kcal (2) G-P(sol) polarization free energy of solvation -74.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds