Wall clock time and date at job start Wed Apr 1 2020 03:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38047 * 126.29365 * 2 1 4 4 C 1.47427 * 126.41293 * 0.02562 * 3 2 1 5 5 O 1.21605 * 119.99894 * 4.08793 * 4 3 2 6 6 N 1.34777 * 119.99681 * 184.08018 * 4 3 2 7 7 C 1.49387 * 125.94131 * 354.96095 * 6 4 3 8 8 C 1.49067 * 104.09369 * 174.02103 * 7 6 4 9 9 H 1.08997 * 106.97673 * 283.85890 * 8 7 6 10 10 C 1.55939 * 102.45984 * 33.25752 * 8 7 6 11 11 H 1.08998 * 109.45400 * 66.49565 * 10 8 7 12 12 C 1.49677 * 125.93461 * 174.93241 * 6 4 3 13 13 C 1.51047 * 104.46878 * 183.73057 * 10 8 7 14 14 H 1.09004 * 113.44711 * 155.96084 * 13 10 8 15 15 C 1.54569 * 109.00427 * 28.57981 * 13 10 8 16 16 C 1.56809 * 107.51733 * 285.63764 * 15 13 10 17 17 C 1.49355 * 128.20133 * 157.31411 * 8 7 6 18 18 H 1.09003 * 112.90283 * 31.29115 * 17 8 7 19 19 C 1.55135 * 109.57053 * 263.55141 * 17 8 7 20 20 N 1.48777 * 106.18185 * 290.98428 * 19 17 8 21 21 C 1.36944 * 123.52140 * 213.29444 * 20 19 17 22 22 H 1.08001 * 119.99969 * 156.37251 * 21 20 19 23 23 C 1.38814 * 120.00275 * 336.37170 * 21 20 19 24 24 N 1.31617 * 120.00049 * 160.97602 * 23 21 20 25 25 Si 1.86802 * 119.99757 * 340.98052 * 23 21 20 26 26 H 1.48501 * 109.47120 * 85.64933 * 25 23 21 27 27 H 1.48500 * 109.47094 * 205.65376 * 25 23 21 28 28 H 1.48506 * 109.46852 * 325.65335 * 25 23 21 29 29 C 1.41295 * 107.17035 * 179.76079 * 3 2 1 30 30 N 1.30449 * 108.02068 * 0.23904 * 29 3 2 31 31 N 1.34265 * 126.29139 * 180.17632 * 2 1 3 32 32 C 1.46497 * 125.74981 * 359.96012 * 31 2 1 33 33 H 1.09001 * 109.47330 * 89.99746 * 1 2 3 34 34 H 1.08996 * 109.47565 * 210.00169 * 1 2 3 35 35 H 1.09002 * 109.47186 * 330.00026 * 1 2 3 36 36 H 1.09004 * 110.40015 * 293.74692 * 7 6 4 37 37 H 1.09007 * 110.39871 * 56.03015 * 7 6 4 38 38 H 1.08994 * 110.74871 * 37.05895 * 12 6 4 39 39 H 1.08999 * 110.90406 * 273.78876 * 12 6 4 40 40 H 1.09009 * 109.57437 * 45.07612 * 15 13 10 41 41 H 1.08998 * 109.57839 * 165.45996 * 15 13 10 42 42 H 1.09001 * 110.40824 * 276.81667 * 16 15 13 43 43 H 1.08997 * 109.68347 * 155.24676 * 16 15 13 44 44 H 1.09000 * 110.11015 * 50.15576 * 19 17 8 45 45 H 1.09004 * 110.10122 * 171.70515 * 19 17 8 46 46 H 0.96995 * 119.99881 * 179.97438 * 24 23 21 47 47 H 1.07992 * 125.98809 * 180.24259 * 29 3 2 48 48 H 1.09003 * 109.47167 * 270.30251 * 32 31 2 49 49 H 1.08995 * 109.47364 * 30.31069 * 32 31 2 50 50 H 1.09004 * 109.46616 * 150.31072 * 32 31 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8858 2.5203 0.0005 5 8 0.7021 2.7885 0.0761 6 7 2.7971 3.5098 -0.0826 7 6 4.2811 3.3381 -0.0741 8 6 4.8065 4.7080 -0.3376 9 1 4.6693 4.9023 -1.4013 10 6 3.7467 5.6147 0.3598 11 1 3.7863 5.4565 1.4375 12 6 2.4982 4.9717 -0.2001 13 6 4.1861 7.0239 0.0393 14 1 3.3752 7.7511 0.0811 15 6 4.9393 7.0215 -1.3105 16 6 6.3542 6.3934 -1.0603 17 6 6.1523 5.2615 -0.0015 18 1 6.9389 4.5073 -0.0240 19 6 6.0745 6.0392 1.3386 20 7 5.2616 7.2551 1.0657 21 6 5.4706 8.4589 1.6842 22 1 5.1432 9.3730 1.2112 23 6 6.1030 8.5044 2.9190 24 7 6.6384 9.6295 3.3432 25 14 6.1945 6.9687 3.9786 26 1 7.3746 6.1609 3.5787 27 1 6.3222 7.3589 5.4057 28 1 4.9592 6.1655 3.7937 29 6 3.6590 0.6498 0.0056 30 7 3.6340 -0.6545 0.0036 31 7 2.3016 -1.0822 -0.0033 32 6 1.8499 -2.4758 -0.0068 33 1 -0.3634 0.0000 -1.0277 34 1 -0.3634 -0.8899 0.5138 35 1 -0.3634 0.8900 0.5138 36 1 4.6146 2.9623 0.8932 37 1 4.5898 2.6610 -0.8707 38 1 1.6261 5.2367 0.3976 39 1 2.3513 5.2561 -1.2420 40 1 4.3891 6.4208 -2.0348 41 1 5.0341 8.0434 -1.6776 42 1 7.0420 7.1468 -0.6763 43 1 6.7386 5.9727 -1.9894 44 1 5.5898 5.4274 2.0993 45 1 7.0750 6.3212 1.6667 46 1 7.0800 9.6614 4.2062 47 1 4.5448 1.2675 0.0108 48 1 1.7333 -2.8225 1.0200 49 1 0.8937 -2.5465 -0.5251 50 1 2.5870 -3.0953 -0.5179 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087338986.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:47 Heat of formation + Delta-G solvation = 102.169871 kcal Electronic energy + Delta-G solvation = -31705.228319 eV Core-core repulsion = 27735.842097 eV Total energy + Delta-G solvation = -3969.386221 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.79528 -42.29640 -39.86866 -37.44506 -35.05507 -34.62974 -33.04231 -32.85659 -32.31963 -31.38710 -29.43544 -28.56756 -27.74799 -27.02654 -25.20987 -23.97247 -23.06426 -22.66179 -21.77977 -21.45647 -20.00280 -19.23286 -18.35626 -18.21155 -17.52953 -17.30352 -16.89405 -16.79164 -16.23943 -16.00741 -15.79280 -15.71195 -15.10925 -14.86833 -14.50631 -14.30705 -14.19584 -14.03735 -13.84541 -13.81659 -13.50776 -13.41151 -13.35140 -13.18931 -13.10970 -13.05050 -12.66491 -12.45887 -12.36628 -12.22307 -12.10156 -11.89856 -11.87947 -11.63204 -11.34635 -11.02004 -10.89140 -10.67424 -10.41820 -10.37165 -9.85892 -9.50117 -8.88746 -8.13422 -5.40418 0.46337 1.11850 1.27821 1.38866 1.39475 1.45630 1.90552 2.40690 2.42519 3.00058 3.17138 3.20523 3.45943 3.56390 3.59631 3.88281 3.96178 4.06168 4.08009 4.15979 4.25879 4.31232 4.33957 4.37727 4.41988 4.46527 4.48334 4.59441 4.60753 4.62298 4.66808 4.71290 4.77469 4.83531 4.89939 4.90611 4.96163 5.03012 5.10103 5.12575 5.17706 5.27902 5.35041 5.41108 5.49306 5.55858 5.66000 5.81104 5.88267 6.17358 6.47773 6.54860 6.82506 7.19812 7.59119 8.12368 9.07640 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017377 B = 0.003087 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.970896 B = 9067.136780 C = 9337.469547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.156 3.844 3 C -0.321 4.321 4 C 0.607 3.393 5 O -0.586 6.586 6 N -0.622 5.622 7 C 0.120 3.880 8 C -0.113 4.113 9 H 0.100 0.900 10 C -0.121 4.121 11 H 0.052 0.948 12 C 0.135 3.865 13 C 0.173 3.827 14 H 0.073 0.927 15 C -0.120 4.120 16 C -0.093 4.093 17 C -0.071 4.071 18 H 0.118 0.882 19 C 0.117 3.883 20 N -0.622 5.622 21 C -0.220 4.220 22 H 0.056 0.944 23 C -0.039 4.039 24 N -0.963 5.963 25 Si 0.944 3.056 26 H -0.268 1.268 27 H -0.318 1.318 28 H -0.276 1.276 29 C 0.073 3.927 30 N -0.323 5.323 31 N -0.362 5.362 32 C 0.083 3.917 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.084 0.916 36 H 0.073 0.927 37 H 0.108 0.892 38 H 0.062 0.938 39 H 0.091 0.909 40 H 0.088 0.912 41 H 0.050 0.950 42 H 0.041 0.959 43 H 0.084 0.916 44 H 0.016 0.984 45 H 0.044 0.956 46 H 0.259 0.741 47 H 0.215 0.785 48 H 0.092 0.908 49 H 0.117 0.883 50 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.523 -26.069 -12.908 30.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.022 3.978 3 C -0.336 4.336 4 C 0.399 3.601 5 O -0.468 6.468 6 N -0.355 5.355 7 C -0.001 4.001 8 C -0.131 4.131 9 H 0.118 0.882 10 C -0.142 4.142 11 H 0.071 0.929 12 C 0.013 3.987 13 C 0.068 3.932 14 H 0.091 0.909 15 C -0.159 4.159 16 C -0.131 4.131 17 C -0.091 4.091 18 H 0.136 0.864 19 C -0.007 4.007 20 N -0.348 5.348 21 C -0.350 4.350 22 H 0.074 0.926 23 C -0.233 4.233 24 N -0.611 5.611 25 Si 0.775 3.225 26 H -0.194 1.194 27 H -0.247 1.247 28 H -0.201 1.201 29 C -0.113 4.113 30 N -0.142 5.142 31 N -0.141 5.141 32 C -0.056 4.056 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.103 0.897 36 H 0.092 0.908 37 H 0.126 0.874 38 H 0.081 0.919 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.103 0.897 44 H 0.034 0.966 45 H 0.062 0.938 46 H 0.068 0.932 47 H 0.231 0.769 48 H 0.110 0.890 49 H 0.136 0.864 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.438 -27.134 -12.746 31.144 hybrid contribution -0.183 1.067 1.542 1.884 sum -8.621 -26.067 -11.204 29.654 Atomic orbital electron populations 1.20726 0.84408 1.05310 1.04957 1.21877 0.95957 0.86187 0.93801 1.19960 0.94026 0.92775 1.26849 1.17102 0.84091 0.83846 0.75031 1.90691 1.17634 1.84561 1.53957 1.49485 1.07003 1.06216 1.72772 1.21488 0.78478 0.97391 1.02758 1.21177 0.95090 0.93498 1.03375 0.88221 1.22213 0.95632 0.96405 0.99903 0.92903 1.21493 0.96724 0.78873 1.01605 1.21300 0.89666 0.92888 0.89318 0.90871 1.22962 0.96301 1.00411 0.96240 1.22697 0.96379 0.96373 0.97680 1.21610 0.96586 0.96534 0.94359 0.86405 1.22136 0.94007 0.87939 0.96625 1.46097 1.34033 1.06941 1.47768 1.18749 1.32815 0.84816 0.98632 0.92616 1.25735 1.00617 0.98541 0.98428 1.69935 1.41152 1.28365 1.21676 0.86003 0.78540 0.80777 0.77197 1.19388 1.24744 1.20144 1.24968 0.98062 0.92006 0.96291 1.77156 0.97324 1.13613 1.26141 1.48747 1.03428 1.07657 1.54263 1.22389 1.02801 0.75068 1.05298 0.88323 0.87981 0.89735 0.90831 0.87378 0.91940 0.89071 0.89331 0.93083 0.94019 0.89721 0.96619 0.93808 0.93248 0.76868 0.88951 0.86444 0.87996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.42 9.38 71.23 0.67 -0.75 16 2 C 0.16 3.15 7.01 42.14 0.30 3.45 16 3 C -0.32 -7.87 6.09 -20.15 -0.12 -7.99 16 4 C 0.61 17.60 7.86 86.66 0.68 18.28 16 5 O -0.59 -20.12 15.12 -4.05 -0.06 -20.18 16 6 N -0.62 -16.32 3.43 -820.30 -2.82 -19.14 16 7 C 0.12 2.49 4.91 84.57 0.42 2.90 16 8 C -0.11 -2.67 2.17 -12.19 -0.03 -2.69 16 9 H 0.10 2.03 5.07 -2.39 -0.01 2.02 16 10 C -0.12 -3.73 2.28 -11.01 -0.03 -3.75 16 11 H 0.05 2.03 6.54 -2.39 -0.02 2.01 16 12 C 0.14 3.69 6.67 85.17 0.57 4.26 16 13 C 0.17 6.10 4.35 44.11 0.19 6.29 16 14 H 0.07 2.70 8.14 -2.38 -0.02 2.68 16 15 C -0.12 -3.42 5.77 32.46 0.19 -3.23 16 16 C -0.09 -2.62 5.60 33.08 0.19 -2.43 16 17 C -0.07 -1.94 4.24 -10.08 -0.04 -1.99 16 18 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 19 C 0.12 4.65 3.18 86.67 0.28 4.92 16 20 N -0.62 -27.99 2.03 -658.85 -1.33 -29.32 16 21 C -0.22 -12.40 10.47 84.03 0.88 -11.52 16 22 H 0.06 3.43 8.06 -2.91 -0.02 3.40 16 23 C -0.04 -2.34 5.38 84.86 0.46 -1.88 16 24 N -0.96 -61.51 13.97 21.65 0.30 -61.21 16 25 Si 0.94 47.93 24.17 68.60 1.66 49.59 16 26 H -0.27 -12.60 6.45 99.48 0.64 -11.96 16 27 H -0.32 -16.66 7.11 99.48 0.71 -15.95 16 28 H -0.28 -13.77 6.57 99.48 0.65 -13.12 16 29 C 0.07 1.58 10.53 85.65 0.90 2.48 16 30 N -0.32 -7.13 12.50 -56.28 -0.70 -7.83 16 31 N -0.36 -6.39 3.98 -354.31 -1.41 -7.80 16 32 C 0.08 0.59 11.06 127.77 1.41 2.01 16 33 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.10 0.80 7.71 -2.39 -0.02 0.79 16 35 H 0.08 1.75 6.43 -2.39 -0.02 1.73 16 36 H 0.07 1.54 7.54 -2.39 -0.02 1.52 16 37 H 0.11 1.61 6.39 -2.38 -0.02 1.60 16 38 H 0.06 1.92 8.05 -2.39 -0.02 1.91 16 39 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.09 1.92 6.61 -2.38 -0.02 1.90 16 41 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.04 1.48 7.71 -2.39 -0.02 1.46 16 43 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.02 0.67 4.87 -2.39 -0.01 0.66 16 45 H 0.04 1.94 6.02 -2.39 -0.01 1.92 16 46 H 0.26 15.83 8.31 -92.71 -0.77 15.05 16 47 H 0.22 3.54 4.50 -2.91 -0.01 3.53 16 48 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 49 H 0.12 0.19 7.64 -2.39 -0.02 0.17 16 50 H 0.10 0.59 8.14 -2.39 -0.02 0.57 16 Total: -1.00 -79.52 368.87 3.39 -76.14 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 0.85 Total: 11.39 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 6.90 Total: 8.35 kcal Atomic # 7 Polarization: -119.34 SS G_CDS: -5.96 Total: -125.30 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.06 Total: -20.18 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 1.66 Total: 49.59 kcal Total: -79.52 3.39 -76.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087338986.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.309 kcal (2) G-P(sol) polarization free energy of solvation -79.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 102.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds