Wall clock time and date at job start Wed Apr 1 2020 03:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35362 * 126.38633 * 2 1 4 4 C 1.41502 * 105.50277 * 179.97438 * 3 2 1 5 5 C 1.47712 * 126.51533 * 179.97438 * 4 3 2 6 6 O 1.21570 * 120.00112 * 359.97438 * 5 4 3 7 7 N 1.34778 * 119.99816 * 179.97438 * 5 4 3 8 8 C 1.52781 * 126.52534 * 181.55738 * 7 5 4 9 9 C 1.49340 * 102.05106 * 203.70277 * 8 7 5 10 10 H 1.08992 * 105.95199 * 63.63396 * 9 8 7 11 11 C 1.56647 * 100.54191 * 316.05048 * 9 8 7 12 12 H 1.09000 * 109.22875 * 291.88357 * 11 9 8 13 13 C 1.49131 * 125.88193 * 359.97438 * 7 5 4 14 14 C 1.51962 * 103.67672 * 174.90519 * 11 9 8 15 15 H 1.08996 * 113.75222 * 207.76489 * 14 11 9 16 16 C 1.56082 * 103.62372 * 83.40194 * 14 11 9 17 17 C 1.53890 * 106.97350 * 322.06556 * 16 14 11 18 18 C 1.49099 * 130.12897 * 191.84397 * 9 8 7 19 19 H 1.09001 * 113.01187 * 329.25425 * 18 9 8 20 20 C 1.56836 * 103.16985 * 205.58607 * 18 9 8 21 21 N 1.49073 * 103.46506 * 323.28526 * 20 18 9 22 22 C 1.36939 * 122.59284 * 144.11010 * 21 20 18 23 23 H 1.07996 * 120.00088 * 200.80011 * 22 21 20 24 24 C 1.38810 * 119.99655 * 21.07861 * 22 21 20 25 25 N 1.31624 * 120.00007 * 10.20473 * 24 22 21 26 26 Si 1.86797 * 119.99896 * 190.20697 * 24 22 21 27 27 H 1.48501 * 109.47096 * 59.99833 * 26 24 22 28 28 H 1.48499 * 109.47107 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.47217 * 299.99776 * 26 24 22 30 30 N 1.31810 * 106.96586 * 0.24044 * 4 3 2 31 31 N 1.28472 * 110.06813 * 359.58939 * 30 4 3 32 32 C 1.46501 * 124.87913 * 180.12982 * 31 30 4 33 33 H 1.09003 * 109.47131 * 90.02855 * 1 2 3 34 34 H 1.09010 * 109.46942 * 210.02635 * 1 2 3 35 35 H 1.08998 * 109.47136 * 330.02637 * 1 2 3 36 36 H 1.08000 * 127.24766 * 359.95679 * 3 2 1 37 37 H 1.09000 * 111.58517 * 85.29339 * 8 7 5 38 38 H 1.09004 * 110.32278 * 321.53820 * 8 7 5 39 39 H 1.09003 * 110.29864 * 67.63771 * 13 7 5 40 40 H 1.08996 * 110.37631 * 305.55201 * 13 7 5 41 41 H 1.09008 * 109.95126 * 81.43640 * 16 14 11 42 42 H 1.08998 * 109.95143 * 202.69818 * 16 14 11 43 43 H 1.09003 * 109.53980 * 86.12165 * 17 16 14 44 44 H 1.09005 * 109.54195 * 206.36978 * 17 16 14 45 45 H 1.09002 * 110.72746 * 204.78128 * 20 18 9 46 46 H 1.08995 * 110.59314 * 81.72696 * 20 18 9 47 47 H 0.96998 * 119.99865 * 180.02562 * 25 24 22 48 48 H 1.09005 * 109.47364 * 270.33579 * 32 31 30 49 49 H 1.09001 * 109.47291 * 30.33794 * 32 31 30 50 50 H 1.08996 * 109.46855 * 150.33566 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3100 1.0897 0.0000 4 6 3.6320 0.5853 0.0006 5 6 4.8764 1.3812 0.0003 6 8 4.8213 2.5956 -0.0010 7 7 6.0730 0.7609 0.0015 8 6 7.4451 1.4320 0.0348 9 6 8.3206 0.3816 -0.5654 10 1 7.9723 0.2508 -1.5899 11 6 7.7855 -0.8929 0.1714 12 1 8.0488 -0.8341 1.2275 13 6 6.2929 -0.7141 0.0037 14 6 8.5455 -2.0333 -0.4852 15 1 8.0103 -2.9827 -0.4720 16 6 9.9045 -2.0591 0.2819 17 6 10.2933 -0.5957 0.5565 18 6 9.8075 0.2850 -0.6183 19 1 10.2969 1.2584 -0.6511 20 6 10.0631 -0.6022 -1.8861 21 7 8.9449 -1.5875 -1.8514 22 6 8.3354 -2.0518 -2.9864 23 1 7.3464 -2.4821 -2.9308 24 6 8.9911 -1.9746 -4.2074 25 7 10.2648 -1.6454 -4.2508 26 14 8.0659 -2.3379 -5.7890 27 1 6.9332 -1.3877 -5.9292 28 1 8.9845 -2.1864 -6.9458 29 1 7.5441 -3.7276 -5.7492 30 7 3.5420 -0.7297 -0.0044 31 7 2.3080 -1.0871 0.0007 32 6 1.8376 -2.4745 0.0001 33 1 -0.3633 -0.0005 -1.0277 34 1 -0.3633 -0.8898 0.5143 35 1 -0.3633 0.8902 0.5134 36 1 2.0057 2.1259 -0.0006 37 1 7.7556 1.6596 1.0545 38 1 7.4414 2.3318 -0.5805 39 1 5.9642 -1.1469 -0.9412 40 1 5.7611 -1.1759 0.8355 41 1 9.7901 -2.5966 1.2233 42 1 10.6683 -2.5383 -0.3306 43 1 9.8235 -0.2610 1.4814 44 1 11.3767 -0.5171 0.6474 45 1 11.0245 -1.1108 -1.8137 46 1 10.0143 0.0012 -2.7925 47 1 10.7228 -1.5911 -5.1041 48 1 1.7219 -2.8186 -1.0277 49 1 2.5633 -3.1045 0.5146 50 1 0.8777 -2.5329 0.5131 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087341839.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:54:57 Heat of formation + Delta-G solvation = 118.975571 kcal Electronic energy + Delta-G solvation = -31886.327452 eV Core-core repulsion = 27917.669980 eV Total energy + Delta-G solvation = -3968.657471 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.67531 -40.76078 -38.54351 -35.68832 -33.65401 -33.11801 -32.75566 -31.07623 -30.22398 -29.77404 -27.77464 -27.45513 -26.71176 -25.27255 -24.14039 -22.29274 -21.76819 -20.91303 -20.63249 -20.13338 -18.66206 -17.35109 -16.95506 -16.69413 -16.41697 -16.28168 -15.68550 -14.98000 -14.62148 -14.48858 -14.35915 -14.18806 -14.05424 -13.52052 -13.30289 -13.03238 -12.92249 -12.78243 -12.58034 -12.45914 -12.39184 -12.20586 -12.07306 -11.55408 -11.33776 -11.13893 -10.98302 -10.92875 -10.71927 -10.63732 -10.58402 -10.30235 -10.05689 -9.97177 -9.74861 -9.67135 -9.11182 -9.07662 -8.96034 -8.92774 -8.48233 -8.24967 -6.72510 -5.74866 -3.12138 1.70087 2.10016 2.38678 3.15629 3.39240 3.45139 3.46248 3.68565 4.24853 4.46414 4.48554 4.67833 4.75039 4.85716 4.92281 5.06000 5.12191 5.21780 5.34905 5.40922 5.45486 5.50242 5.54160 5.62054 5.67043 5.73824 5.77371 5.80455 5.87197 5.95480 6.04108 6.12313 6.19648 6.29916 6.32571 6.37229 6.46366 6.50488 6.54643 6.58654 6.72252 6.74103 6.89346 6.96594 7.09435 7.30161 7.46325 7.64148 7.80793 7.82927 7.94329 8.32124 8.47530 9.18854 9.80750 10.43855 11.35559 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010609 B = 0.003961 C = 0.003356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2638.690808 B = 7066.929670 C = 8341.166320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.003 3.997 3 C -0.181 4.181 4 C -0.006 4.006 5 C 0.616 3.384 6 O -0.549 6.549 7 N -0.612 5.612 8 C 0.139 3.861 9 C -0.120 4.120 10 H 0.099 0.901 11 C -0.131 4.131 12 H 0.066 0.934 13 C 0.133 3.867 14 C 0.180 3.820 15 H 0.076 0.924 16 C -0.129 4.129 17 C -0.108 4.108 18 C -0.095 4.095 19 H 0.075 0.925 20 C 0.190 3.810 21 N -0.594 5.594 22 C -0.239 4.239 23 H 0.067 0.933 24 C 0.000 4.000 25 N -0.913 5.913 26 Si 0.902 3.098 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.285 1.285 30 N -0.250 5.250 31 N -0.285 5.285 32 C 0.086 3.914 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.159 0.841 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.048 0.952 42 H 0.071 0.929 43 H 0.049 0.951 44 H 0.052 0.948 45 H 0.035 0.965 46 H 0.073 0.927 47 H 0.253 0.747 48 H 0.085 0.915 49 H 0.097 0.903 50 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.138 -0.297 11.973 18.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.121 4.121 3 C -0.209 4.209 4 C -0.166 4.166 5 C 0.403 3.597 6 O -0.426 6.426 7 N -0.346 5.346 8 C 0.019 3.981 9 C -0.140 4.140 10 H 0.117 0.883 11 C -0.152 4.152 12 H 0.085 0.915 13 C 0.012 3.988 14 C 0.073 3.927 15 H 0.094 0.906 16 C -0.168 4.168 17 C -0.146 4.146 18 C -0.115 4.115 19 H 0.093 0.907 20 C 0.066 3.934 21 N -0.318 5.318 22 C -0.369 4.369 23 H 0.085 0.915 24 C -0.197 4.197 25 N -0.559 5.559 26 Si 0.732 3.268 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.211 1.211 30 N -0.085 5.085 31 N -0.074 5.074 32 C -0.055 4.055 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.103 0.897 36 H 0.177 0.823 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.067 0.933 42 H 0.089 0.911 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.053 0.947 46 H 0.092 0.908 47 H 0.063 0.937 48 H 0.103 0.897 49 H 0.116 0.884 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -13.551 -0.744 11.726 17.936 hybrid contribution -1.000 0.278 -0.928 1.392 sum -14.552 -0.466 10.798 18.127 Atomic orbital electron populations 1.20318 0.86844 1.03585 1.03164 1.21360 0.95303 0.86845 1.08601 1.21473 0.90554 0.99444 1.09414 1.21867 0.94932 0.89719 1.10112 1.16469 0.80690 0.85858 0.76727 1.90752 1.86430 1.12812 1.52599 1.50268 1.04881 1.08453 1.70948 1.21627 0.80259 0.95885 1.00336 1.21098 0.95689 0.93299 1.03893 0.88268 1.22938 0.93180 0.99627 0.99486 0.91540 1.21500 0.96212 0.79109 1.02022 1.21222 0.92199 0.93603 0.85719 0.90612 1.22790 0.99176 0.95923 0.98883 1.22048 0.99463 0.95527 0.97549 1.21811 0.92435 0.98416 0.98871 0.90669 1.22077 0.89831 0.88643 0.92841 1.45483 1.39306 1.47362 0.99626 1.19082 0.97145 1.35399 0.85240 0.91539 1.24908 0.95245 1.01492 0.98064 1.69929 1.07957 1.53551 1.24434 0.86372 0.78855 0.78108 0.83438 1.21280 1.21657 1.21146 1.73763 1.01041 1.14953 1.18749 1.45398 1.03014 1.07428 1.51583 1.22139 1.01344 0.77443 1.04539 0.90444 0.91337 0.89728 0.82293 0.91776 0.90612 0.90754 0.91638 0.93332 0.91077 0.93215 0.92922 0.94693 0.90830 0.93666 0.89662 0.88394 0.88919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.10 36.00 0.36 -0.16 16 2 C 0.00 0.03 6.92 -82.21 -0.57 -0.54 16 3 C -0.18 -2.57 10.73 -39.36 -0.42 -2.99 16 4 C -0.01 -0.11 6.99 -82.76 -0.58 -0.68 16 5 C 0.62 11.84 7.90 -12.39 -0.10 11.74 16 6 O -0.55 -11.69 17.34 5.30 0.09 -11.60 16 7 N -0.61 -11.24 3.51 -170.35 -0.60 -11.84 16 8 C 0.14 2.41 6.98 -2.25 -0.02 2.39 16 9 C -0.12 -2.21 2.30 -92.37 -0.21 -2.42 16 10 H 0.10 2.25 6.06 -51.93 -0.31 1.94 16 11 C -0.13 -2.26 2.31 -90.06 -0.21 -2.47 16 12 H 0.07 1.07 6.35 -51.93 -0.33 0.74 16 13 C 0.13 2.33 5.31 -3.46 -0.02 2.31 16 14 C 0.18 3.47 4.38 -65.34 -0.29 3.19 16 15 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 16 C -0.13 -2.22 5.47 -24.62 -0.13 -2.36 16 17 C -0.11 -1.73 5.30 -25.40 -0.13 -1.87 16 18 C -0.10 -1.71 4.25 -89.59 -0.38 -2.09 16 19 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 20 C 0.19 4.32 4.08 -0.54 0.00 4.32 16 21 N -0.59 -13.92 1.81 -157.91 -0.29 -14.20 16 22 C -0.24 -6.34 9.87 -15.06 -0.15 -6.49 16 23 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 24 C 0.00 0.01 5.23 -17.43 -0.09 -0.08 16 25 N -0.91 -25.93 10.84 55.49 0.60 -25.33 16 26 Si 0.90 21.93 29.57 -169.99 -5.03 16.91 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 29 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 30 N -0.25 -3.88 9.56 33.42 0.32 -3.56 16 31 N -0.29 -3.42 3.70 -63.85 -0.24 -3.66 16 32 C 0.09 0.60 11.11 59.85 0.66 1.26 16 33 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.30 7.00 -51.92 -0.36 -0.06 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.16 2.06 8.06 -52.49 -0.42 1.63 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.07 1.47 8.06 -51.93 -0.42 1.05 16 40 H 0.07 1.07 7.42 -51.93 -0.39 0.68 16 41 H 0.05 0.72 8.14 -51.92 -0.42 0.30 16 42 H 0.07 1.38 7.31 -51.93 -0.38 1.00 16 43 H 0.05 0.73 6.96 -51.93 -0.36 0.37 16 44 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.04 0.85 7.19 -51.93 -0.37 0.48 16 46 H 0.07 1.90 6.80 -51.93 -0.35 1.55 16 47 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 48 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.10 0.65 8.14 -51.93 -0.42 0.22 16 50 H 0.09 0.36 6.95 -51.93 -0.36 0.00 16 LS Contribution 382.62 15.07 5.77 5.77 Total: -1.00 -32.91 382.62 -9.48 -42.38 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -7.84 Total: 2.08 kcal Atomic # 6 Polarization: 5.33 SS G_CDS: -2.27 Total: 3.06 kcal Atomic # 7 Polarization: -58.39 SS G_CDS: -0.20 Total: -58.59 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.09 Total: -11.60 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.91 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.91 -9.48 -42.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087341839.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.359 kcal (2) G-P(sol) polarization free energy of solvation -32.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.383 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds