Wall clock time and date at job start Wed Apr 1 2020 03:55:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35363 * 126.38924 * 2 1 4 4 C 1.41495 * 105.50389 * 180.08948 * 3 2 1 5 5 C 1.47711 * 126.51951 * 179.90266 * 4 3 2 6 6 O 1.21567 * 119.99947 * 359.70946 * 5 4 3 7 7 N 1.34773 * 120.00164 * 179.70970 * 5 4 3 8 8 C 1.48156 * 127.84114 * 180.02562 * 7 5 4 9 9 C 1.54377 * 104.61402 * 219.54183 * 8 7 5 10 10 H 1.08993 * 111.27313 * 216.26396 * 9 8 7 11 11 C 1.54168 * 104.99618 * 336.19131 * 9 8 7 12 12 H 1.09001 * 110.99998 * 239.28639 * 11 9 8 13 13 C 1.48161 * 127.83661 * 0.02768 * 7 5 4 14 14 C 1.53269 * 109.35071 * 116.56557 * 11 9 8 15 15 H 1.08998 * 110.93402 * 182.14719 * 14 11 9 16 16 C 1.53322 * 108.75210 * 60.43475 * 14 11 9 17 17 C 1.52936 * 109.58809 * 299.33057 * 16 14 11 18 18 C 1.52982 * 109.08332 * 93.78404 * 9 8 7 19 19 H 1.08998 * 110.12865 * 65.76741 * 18 9 8 20 20 C 1.53607 * 109.29429 * 305.26785 * 18 9 8 21 21 N 1.47639 * 106.74329 * 300.52196 * 20 18 9 22 22 C 1.36931 * 122.07116 * 179.97438 * 21 20 18 23 23 H 1.08002 * 120.00438 * 179.71804 * 22 21 20 24 24 C 1.38817 * 119.99680 * 359.43762 * 22 21 20 25 25 N 1.31614 * 119.99888 * 0.27479 * 24 22 21 26 26 Si 1.86803 * 119.99862 * 180.27671 * 24 22 21 27 27 H 1.48498 * 109.47174 * 90.00121 * 26 24 22 28 28 H 1.48501 * 109.47062 * 210.00072 * 26 24 22 29 29 H 1.48504 * 109.46913 * 329.99871 * 26 24 22 30 30 N 1.31816 * 106.96453 * 359.63946 * 4 3 2 31 31 N 1.28474 * 110.07036 * 0.22554 * 30 4 3 32 32 C 1.46500 * 124.87964 * 179.97438 * 31 30 4 33 33 H 1.09002 * 109.46935 * 270.32499 * 1 2 3 34 34 H 1.09010 * 109.46763 * 30.31754 * 1 2 3 35 35 H 1.08994 * 109.47386 * 150.31537 * 1 2 3 36 36 H 1.08005 * 127.24466 * 359.97193 * 3 2 1 37 37 H 1.08996 * 110.41089 * 100.75941 * 8 7 5 38 38 H 1.09001 * 110.40494 * 338.32213 * 8 7 5 39 39 H 1.08995 * 110.41622 * 21.64405 * 13 7 5 40 40 H 1.09007 * 110.50675 * 259.25254 * 13 7 5 41 41 H 1.08995 * 109.45114 * 59.36464 * 16 14 11 42 42 H 1.09002 * 109.45175 * 179.32201 * 16 14 11 43 43 H 1.09003 * 109.38026 * 120.86966 * 17 16 14 44 44 H 1.09000 * 109.38516 * 240.53962 * 17 16 14 45 45 H 1.09002 * 110.12114 * 181.14812 * 20 18 9 46 46 H 1.09001 * 109.87063 * 59.76413 * 20 18 9 47 47 H 0.97005 * 119.99715 * 179.97438 * 25 24 22 48 48 H 1.09004 * 109.46918 * 89.98397 * 32 31 30 49 49 H 1.09002 * 109.46837 * 209.97684 * 32 31 30 50 50 H 1.08990 * 109.47236 * 329.97967 * 32 31 30 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3101 1.0897 0.0000 4 6 3.6321 0.5852 -0.0021 5 6 4.8765 1.3810 -0.0050 6 8 4.8215 2.5954 -0.0110 7 7 6.0730 0.7607 -0.0009 8 6 7.4184 1.3811 -0.0022 9 6 8.2556 0.4938 -0.9484 10 1 9.2824 0.3984 -0.5956 11 6 7.5457 -0.8747 -0.9439 12 1 8.2159 -1.6613 -0.5973 13 6 6.3414 -0.6964 0.0060 14 6 7.0240 -1.1808 -2.3522 15 1 6.4836 -2.1272 -2.3702 16 6 8.2126 -1.2230 -3.3198 17 6 8.9160 0.1349 -3.3275 18 6 8.2194 1.0909 -2.3564 19 1 8.7247 2.0566 -2.3674 20 6 6.7581 1.2679 -2.7953 21 7 6.1393 -0.0723 -2.7641 22 6 4.8280 -0.2757 -3.1018 23 1 4.4107 -1.2713 -3.0715 24 6 4.0334 0.7988 -3.4775 25 7 4.5419 2.0122 -3.5144 26 14 2.2424 0.5224 -3.9308 27 1 1.3994 0.6442 -2.7144 28 1 1.8218 1.5389 -4.9284 29 1 2.0823 -0.8355 -4.5102 30 7 3.5420 -0.7298 0.0047 31 7 2.3079 -1.0872 0.0060 32 6 1.8375 -2.4746 0.0125 33 1 -0.3633 0.0058 1.0277 34 1 -0.3633 0.8872 -0.5188 35 1 -0.3634 -0.8927 -0.5089 36 1 2.0058 2.1260 -0.0004 37 1 7.8424 1.3717 1.0018 38 1 7.3664 2.4006 -0.3843 39 1 5.4769 -1.2440 -0.3693 40 1 6.5967 -1.0330 1.0109 41 1 8.9141 -1.9933 -2.9995 42 1 7.8554 -1.4521 -4.3238 43 1 9.9552 0.0057 -3.0250 44 1 8.8831 0.5537 -4.3333 45 1 6.7167 1.6741 -3.8060 46 1 6.2415 1.9332 -2.1035 47 1 3.9867 2.7629 -3.7773 48 1 1.7208 -2.8138 1.0419 49 1 0.8780 -2.5352 -0.5009 50 1 2.5636 -3.1068 -0.4983 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087341841.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:05 Heat of formation + Delta-G solvation = 99.346498 kcal Electronic energy + Delta-G solvation = -34275.552779 eV Core-core repulsion = 30306.044127 eV Total energy + Delta-G solvation = -3969.508652 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.01144 -40.35139 -37.72850 -35.05820 -33.27144 -32.93242 -32.19042 -31.43258 -29.96416 -29.54553 -27.28662 -26.91341 -26.21246 -25.13260 -23.97701 -21.75942 -21.67797 -20.81615 -20.25829 -20.11248 -18.38711 -17.13021 -16.36507 -15.98896 -15.85970 -15.76442 -15.53866 -14.90693 -14.45185 -14.35068 -13.97765 -13.71505 -13.30847 -13.09244 -12.94254 -12.59461 -12.56542 -12.32884 -12.16537 -12.08221 -11.89248 -11.86769 -11.71525 -11.55283 -11.31219 -11.07018 -11.05612 -10.79986 -10.59895 -10.52109 -10.31884 -10.07571 -9.83719 -9.57732 -9.49921 -9.15930 -9.09354 -9.01709 -8.44586 -8.28798 -8.14630 -7.69984 -6.58085 -5.41200 -2.75439 2.38685 2.79545 2.97917 3.48320 3.49853 3.55589 3.83249 4.47229 4.66869 4.78486 5.01342 5.12614 5.18241 5.20303 5.25872 5.37483 5.45578 5.50986 5.62683 5.63615 5.76520 5.84085 5.85472 5.89757 5.93876 5.95607 6.00519 6.05758 6.10599 6.22505 6.29838 6.34424 6.47525 6.47690 6.51472 6.58052 6.59125 6.71521 6.76975 6.86747 6.88076 6.97991 7.09149 7.18170 7.28352 7.47309 7.83327 7.96852 8.19148 8.47098 8.56031 8.62197 9.22458 9.49483 10.11477 10.66352 11.63013 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012934 B = 0.006156 C = 0.005489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.309544 B = 4547.159776 C = 5100.350734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.000 4.000 3 C -0.177 4.177 4 C 0.035 3.965 5 C 0.649 3.351 6 O -0.542 6.542 7 N -0.588 5.588 8 C 0.116 3.884 9 C -0.083 4.083 10 H 0.069 0.931 11 C -0.115 4.115 12 H 0.070 0.930 13 C 0.115 3.885 14 C 0.180 3.820 15 H 0.062 0.938 16 C -0.128 4.128 17 C -0.098 4.098 18 C -0.114 4.114 19 H 0.059 0.941 20 C 0.198 3.802 21 N -0.588 5.588 22 C -0.220 4.220 23 H 0.061 0.939 24 C 0.009 3.991 25 N -0.907 5.907 26 Si 0.878 3.122 27 H -0.276 1.276 28 H -0.297 1.297 29 H -0.292 1.292 30 N -0.248 5.248 31 N -0.292 5.292 32 C 0.092 3.908 33 H 0.071 0.929 34 H 0.079 0.921 35 H 0.063 0.937 36 H 0.149 0.851 37 H 0.054 0.946 38 H 0.080 0.920 39 H 0.109 0.891 40 H 0.044 0.956 41 H 0.044 0.956 42 H 0.055 0.945 43 H 0.041 0.959 44 H 0.052 0.948 45 H 0.040 0.960 46 H 0.067 0.933 47 H 0.247 0.753 48 H 0.076 0.924 49 H 0.086 0.914 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.013 -8.690 8.667 12.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.123 4.123 3 C -0.205 4.205 4 C -0.126 4.126 5 C 0.437 3.563 6 O -0.418 6.418 7 N -0.320 5.320 8 C -0.007 4.007 9 C -0.102 4.102 10 H 0.087 0.913 11 C -0.136 4.136 12 H 0.088 0.912 13 C -0.008 4.008 14 C 0.071 3.929 15 H 0.080 0.920 16 C -0.168 4.168 17 C -0.136 4.136 18 C -0.133 4.133 19 H 0.078 0.922 20 C 0.074 3.926 21 N -0.312 5.312 22 C -0.350 4.350 23 H 0.079 0.921 24 C -0.188 4.188 25 N -0.554 5.554 26 Si 0.710 3.290 27 H -0.203 1.203 28 H -0.224 1.224 29 H -0.219 1.219 30 N -0.082 5.082 31 N -0.080 5.080 32 C -0.049 4.049 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.167 0.833 37 H 0.073 0.927 38 H 0.098 0.902 39 H 0.127 0.873 40 H 0.062 0.938 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.070 0.930 45 H 0.058 0.942 46 H 0.085 0.915 47 H 0.058 0.942 48 H 0.095 0.905 49 H 0.104 0.896 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.285 -8.898 8.599 12.377 hybrid contribution -1.413 0.461 -0.674 1.632 sum -1.128 -8.437 7.925 11.630 Atomic orbital electron populations 1.20250 0.87810 1.03302 1.02197 1.21085 0.94733 0.87128 1.09382 1.21309 0.91170 0.98867 1.09116 1.21487 0.94343 0.89272 1.07462 1.16055 0.80143 0.85409 0.74704 1.90717 1.86160 1.13171 1.51741 1.48181 1.04109 1.07571 1.72163 1.22200 0.82362 0.98517 0.97623 1.21962 0.97333 0.95093 0.95833 0.91260 1.22775 0.95965 0.96221 0.98672 0.91189 1.22417 0.99527 0.82261 0.96643 1.20535 0.90356 0.92101 0.89884 0.91976 1.22045 0.97998 0.96005 1.00718 1.21325 0.97124 0.96092 0.99073 1.21863 1.01140 0.96915 0.93399 0.92235 1.21250 0.84887 0.86566 0.99910 1.44401 1.07069 1.01599 1.78097 1.18868 0.85438 0.92732 1.37911 0.92102 1.24526 0.96688 0.95491 1.02084 1.69971 1.33649 0.97897 1.53888 0.86632 0.87944 0.76186 0.78277 1.20306 1.22381 1.21896 1.73483 1.00304 1.15144 1.19307 1.45177 1.03273 1.06668 1.52877 1.21961 1.01247 0.78387 1.03323 0.91037 0.90232 0.91798 0.83314 0.92739 0.90198 0.87295 0.93777 0.93777 0.92590 0.94023 0.92956 0.94178 0.91534 0.94197 0.90505 0.89583 0.88792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 10.10 36.01 0.36 -0.61 16 2 C 0.00 0.00 6.44 -82.21 -0.53 -0.53 16 3 C -0.18 -3.69 10.72 -39.37 -0.42 -4.11 16 4 C 0.04 0.78 7.01 -82.76 -0.58 0.20 16 5 C 0.65 15.48 6.91 -12.39 -0.09 15.39 16 6 O -0.54 -14.55 17.00 5.31 0.09 -14.46 16 7 N -0.59 -12.27 1.98 -170.44 -0.34 -12.61 16 8 C 0.12 2.15 5.80 -2.41 -0.01 2.14 16 9 C -0.08 -1.41 3.17 -89.30 -0.28 -1.69 16 10 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 11 C -0.11 -1.96 3.21 -89.13 -0.29 -2.24 16 12 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 13 C 0.12 2.10 5.80 -2.38 -0.01 2.09 16 14 C 0.18 3.51 2.88 -66.98 -0.19 3.32 16 15 H 0.06 1.22 7.99 -51.93 -0.42 0.81 16 16 C -0.13 -2.26 5.85 -26.60 -0.16 -2.42 16 17 C -0.10 -1.73 5.65 -26.74 -0.15 -1.88 16 18 C -0.11 -2.19 2.71 -90.29 -0.24 -2.44 16 19 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 20 C 0.20 4.82 3.64 -3.10 -0.01 4.80 16 21 N -0.59 -13.91 2.01 -163.14 -0.33 -14.24 16 22 C -0.22 -5.82 9.99 -15.06 -0.15 -5.97 16 23 H 0.06 1.64 7.79 -52.49 -0.41 1.23 16 24 C 0.01 0.25 5.47 -17.43 -0.10 0.15 16 25 N -0.91 -26.76 9.77 55.49 0.54 -26.22 16 26 Si 0.88 22.40 29.55 -169.99 -5.02 17.38 16 27 H -0.28 -6.81 6.61 56.52 0.37 -6.44 16 28 H -0.30 -7.89 7.11 56.52 0.40 -7.49 16 29 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 30 N -0.25 -4.92 9.05 33.42 0.30 -4.62 16 31 N -0.29 -4.93 3.70 -63.85 -0.24 -5.17 16 32 C 0.09 1.03 11.11 59.85 0.66 1.69 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 1.02 8.14 -51.92 -0.42 0.59 16 35 H 0.06 0.69 7.00 -51.93 -0.36 0.32 16 36 H 0.15 3.08 8.06 -52.48 -0.42 2.65 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.08 1.65 7.02 -51.93 -0.36 1.28 16 39 H 0.11 2.18 5.21 -51.93 -0.27 1.91 16 40 H 0.04 0.71 8.14 -51.92 -0.42 0.29 16 41 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.04 1.13 7.25 -51.93 -0.38 0.75 16 46 H 0.07 1.83 4.24 -51.93 -0.22 1.61 16 47 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 48 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 49 H 0.09 0.79 6.95 -51.93 -0.36 0.43 16 50 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 376.02 15.07 5.67 5.67 Total: -1.00 -33.87 376.02 -9.37 -43.24 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -7.86 Total: 3.12 kcal Atomic # 6 Polarization: 10.10 SS G_CDS: -2.19 Total: 7.91 kcal Atomic # 7 Polarization: -62.80 SS G_CDS: -0.06 Total: -62.86 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: 0.09 Total: -14.46 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.87 -9.37 -43.24 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087341841.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.588 kcal (2) G-P(sol) polarization free energy of solvation -33.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds