Wall clock time and date at job start Wed Apr 1 2020 03:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39676 * 126.07018 * 2 1 4 4 C 1.38407 * 105.35860 * 180.14443 * 3 2 1 5 5 C 1.47152 * 126.88613 * 179.91407 * 4 3 2 6 6 O 1.21630 * 120.00706 * 175.69475 * 5 4 3 7 7 N 1.34777 * 119.99931 * 355.69278 * 5 4 3 8 8 C 1.49837 * 125.88559 * 174.80776 * 7 5 4 9 9 C 1.49333 * 102.29715 * 203.20612 * 8 7 5 10 10 H 1.09005 * 105.23138 * 65.28736 * 9 8 7 11 11 C 1.56046 * 101.39398 * 317.15867 * 9 8 7 12 12 H 1.09004 * 109.78733 * 291.22192 * 11 9 8 13 13 C 1.49142 * 125.88146 * 354.76130 * 7 5 4 14 14 C 1.51965 * 103.96555 * 173.83891 * 11 9 8 15 15 H 1.08996 * 114.19239 * 208.23632 * 14 11 9 16 16 C 1.56083 * 103.09974 * 83.98044 * 14 11 9 17 17 C 1.53897 * 106.97616 * 322.24791 * 16 14 11 18 18 C 1.49097 * 130.13558 * 192.56443 * 9 8 7 19 19 H 1.08999 * 113.75356 * 329.89351 * 18 9 8 20 20 C 1.56853 * 103.18842 * 206.76929 * 18 9 8 21 21 N 1.49078 * 103.45081 * 323.30661 * 20 18 9 22 22 C 1.36941 * 122.59311 * 144.08311 * 21 20 18 23 23 H 1.07995 * 119.99915 * 201.50115 * 22 21 20 24 24 C 1.38811 * 119.99580 * 21.49792 * 22 21 20 25 25 N 1.31616 * 120.00398 * 24.48179 * 24 22 21 26 26 Si 1.86800 * 119.99567 * 204.48208 * 24 22 21 27 27 H 1.48506 * 109.47083 * 179.97438 * 26 24 22 28 28 H 1.48501 * 109.47223 * 60.00206 * 26 24 22 29 29 H 1.48491 * 109.47309 * 299.99837 * 26 24 22 30 30 N 1.36605 * 106.23058 * 359.64994 * 4 3 2 31 31 C 1.46496 * 125.18825 * 180.24489 * 30 4 3 32 32 N 1.28443 * 109.62017 * 0.22746 * 30 4 3 33 33 H 1.08998 * 109.47263 * 270.27490 * 1 2 3 34 34 H 1.09003 * 109.46971 * 30.27047 * 1 2 3 35 35 H 1.08998 * 109.47082 * 150.27258 * 1 2 3 36 36 H 1.07995 * 127.32000 * 0.06083 * 3 2 1 37 37 H 1.09006 * 110.83461 * 85.00206 * 8 7 5 38 38 H 1.09004 * 110.83910 * 321.41320 * 8 7 5 39 39 H 1.08995 * 110.28896 * 67.66136 * 13 7 5 40 40 H 1.09001 * 110.29085 * 305.53565 * 13 7 5 41 41 H 1.09005 * 109.95091 * 81.61414 * 16 14 11 42 42 H 1.08999 * 109.95385 * 202.79178 * 16 14 11 43 43 H 1.09000 * 109.54176 * 86.11791 * 17 16 14 44 44 H 1.08993 * 109.54202 * 206.37323 * 17 16 14 45 45 H 1.09000 * 110.74081 * 204.81265 * 20 18 9 46 46 H 1.08998 * 110.59886 * 81.73697 * 20 18 9 47 47 H 0.97006 * 119.99661 * 4.88551 * 25 24 22 48 48 H 1.09003 * 109.47329 * 84.16098 * 31 30 4 49 49 H 1.09006 * 109.47027 * 204.15735 * 31 30 4 50 50 H 1.08998 * 109.47421 * 324.15812 * 31 30 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3294 1.1290 0.0000 4 6 3.6240 0.6395 -0.0034 5 6 4.8664 1.4280 -0.0065 6 8 5.9430 0.8672 0.0698 7 7 4.8114 2.7718 -0.0939 8 6 5.9786 3.7067 0.0010 9 6 5.3295 4.9841 0.4215 10 1 4.9317 4.7889 1.4174 11 6 4.0657 5.0036 -0.4936 12 1 4.3636 5.1562 -1.5309 13 6 3.5785 3.5845 -0.3027 14 6 3.2764 6.2060 -0.0032 15 1 2.1996 6.1240 -0.1512 16 6 3.9342 7.3970 -0.7681 17 6 5.4450 7.1107 -0.8314 18 6 5.8734 6.3719 0.4581 19 1 6.9475 6.4179 0.6378 20 6 5.0264 7.0586 1.5856 21 7 3.6707 6.4634 1.4121 22 6 2.8486 6.1800 2.4700 23 1 2.0544 5.4568 2.3581 24 6 3.0361 6.8225 3.6861 25 7 3.6311 7.9958 3.7258 26 14 2.4439 6.0216 5.2665 27 1 2.7622 6.9039 6.4179 28 1 3.1237 4.7133 5.4433 29 1 0.9758 5.8110 5.1947 30 7 3.5173 -0.7224 0.0028 31 6 4.6449 -1.6575 0.0072 32 7 2.2774 -1.0578 0.0047 33 1 -0.3634 0.0049 1.0276 34 1 -0.3633 0.8876 -0.5180 35 1 -0.3633 -0.8924 -0.5096 36 1 2.0207 2.1639 0.0009 37 1 6.4649 3.8193 -0.9681 38 1 6.6883 3.3656 0.7548 39 1 2.9315 3.5214 0.5722 40 1 3.0476 3.2443 -1.1919 41 1 3.5255 7.4625 -1.7765 42 1 3.7530 8.3287 -0.2323 43 1 5.6618 6.4865 -1.6982 44 1 5.9911 8.0505 -0.9116 45 1 4.9924 8.1382 1.4395 46 1 5.4286 6.8157 2.5691 47 1 3.8749 8.4441 2.9008 48 1 4.9913 -1.8043 1.0302 49 1 4.3261 -2.6131 -0.4091 50 1 5.4565 -1.2510 -0.5964 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087341845.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:19 Heat of formation + Delta-G solvation = 117.792719 kcal Electronic energy + Delta-G solvation = -32168.785781 eV Core-core repulsion = 28200.077017 eV Total energy + Delta-G solvation = -3968.708764 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.56788 -41.15089 -38.87828 -36.23856 -34.06503 -33.51295 -31.82636 -31.15073 -29.92330 -29.75037 -29.65621 -27.65051 -25.69353 -25.19956 -24.58513 -22.42007 -21.79165 -21.29836 -20.67132 -20.40593 -18.90956 -17.84787 -17.17920 -17.04709 -16.53437 -16.34911 -15.68614 -15.20470 -15.01596 -14.81318 -14.45644 -13.84339 -13.72545 -13.56229 -13.35674 -13.31501 -13.14691 -12.80846 -12.60160 -12.48521 -12.47669 -12.33693 -12.30346 -11.78081 -11.47053 -11.25882 -11.19094 -11.15548 -10.78034 -10.71343 -10.54098 -10.48050 -10.12433 -9.98597 -9.97384 -9.72481 -9.35484 -9.13040 -9.05514 -8.87670 -8.55035 -8.44072 -6.98338 -6.11312 -3.21585 1.27571 2.28307 2.52775 3.03228 3.24241 3.46804 3.51444 3.67801 4.29006 4.41211 4.49592 4.64957 4.80846 4.95314 5.05803 5.10511 5.14160 5.21918 5.28971 5.33916 5.38040 5.41950 5.49008 5.53632 5.56541 5.58476 5.61333 5.72177 5.75755 5.78531 5.78617 5.92538 5.94112 6.04712 6.09708 6.16798 6.17954 6.25994 6.32180 6.45558 6.50835 6.60985 6.70298 6.71249 6.82395 6.88973 7.03486 7.13248 7.49600 7.80534 7.98236 8.13878 8.46428 8.97591 9.76640 10.24207 11.20713 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010549 B = 0.004152 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.663350 B = 6742.849465 C = 7935.964277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.020 3.980 3 C -0.190 4.190 4 C -0.030 4.030 5 C 0.605 3.395 6 O -0.554 6.554 7 N -0.603 5.603 8 C 0.140 3.860 9 C -0.121 4.121 10 H 0.101 0.899 11 C -0.128 4.128 12 H 0.072 0.928 13 C 0.113 3.887 14 C 0.182 3.818 15 H 0.081 0.919 16 C -0.132 4.132 17 C -0.110 4.110 18 C -0.085 4.085 19 H 0.078 0.922 20 C 0.158 3.842 21 N -0.598 5.598 22 C -0.343 4.343 23 H 0.060 0.940 24 C -0.022 4.022 25 N -0.921 5.921 26 Si 1.060 2.940 27 H -0.286 1.286 28 H -0.295 1.295 29 H -0.293 1.293 30 N -0.262 5.262 31 C 0.092 3.908 32 N -0.281 5.281 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.069 0.931 36 H 0.171 0.829 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.070 0.930 41 H 0.052 0.948 42 H 0.068 0.932 43 H 0.053 0.947 44 H 0.054 0.946 45 H 0.033 0.967 46 H 0.064 0.936 47 H 0.269 0.731 48 H 0.083 0.917 49 H 0.092 0.908 50 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.118 -10.523 -11.368 15.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.137 4.137 3 C -0.218 4.218 4 C -0.158 4.158 5 C 0.393 3.607 6 O -0.433 6.433 7 N -0.336 5.336 8 C 0.019 3.981 9 C -0.140 4.140 10 H 0.119 0.881 11 C -0.150 4.150 12 H 0.090 0.910 13 C -0.008 4.008 14 C 0.074 3.926 15 H 0.099 0.901 16 C -0.171 4.171 17 C -0.148 4.148 18 C -0.105 4.105 19 H 0.097 0.903 20 C 0.034 3.966 21 N -0.322 5.322 22 C -0.472 4.472 23 H 0.078 0.922 24 C -0.224 4.224 25 N -0.562 5.562 26 Si 0.890 3.110 27 H -0.211 1.211 28 H -0.222 1.222 29 H -0.220 1.220 30 N -0.049 5.049 31 C -0.048 4.048 32 N -0.115 5.115 33 H 0.092 0.908 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.188 0.812 37 H 0.082 0.918 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.088 0.912 41 H 0.071 0.929 42 H 0.087 0.913 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.051 0.949 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.102 0.898 49 H 0.110 0.890 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 0.700 -12.016 -9.570 15.377 hybrid contribution 0.023 0.627 -1.617 1.735 sum 0.723 -11.389 -11.187 15.981 Atomic orbital electron populations 1.20082 0.86384 1.03047 1.02894 1.22041 0.97135 0.88863 1.05620 1.22719 0.90320 1.01076 1.07703 1.21307 0.95763 0.85082 1.13634 1.16453 0.86483 0.80797 0.77011 1.90760 1.29982 1.70112 1.52475 1.49338 1.10337 1.03918 1.69987 1.21152 0.87486 0.88465 1.00976 1.21002 0.96083 0.92919 1.04028 0.88094 1.22815 0.98871 0.93900 0.99381 0.90979 1.21943 0.86647 0.91083 1.01157 1.21243 0.95941 0.90084 0.85290 0.90078 1.22841 0.95032 1.00072 0.99142 1.22068 0.96212 0.99267 0.97223 1.21626 0.98912 0.92627 0.97305 0.90337 1.22288 0.84110 0.94613 0.95630 1.45550 1.12774 1.73870 1.00040 1.19888 1.14806 1.20943 0.91573 0.92217 1.25676 1.00514 0.95271 1.00937 1.70812 1.42468 1.11490 1.31391 0.83584 0.75617 0.75300 0.76514 1.21131 1.22222 1.22016 1.45474 1.05052 1.04263 1.50125 1.22234 0.85540 0.92221 1.04833 1.73087 0.89442 1.27963 1.21026 0.90753 0.90424 0.91195 0.81152 0.91832 0.90451 0.89938 0.91170 0.92940 0.91342 0.92789 0.92715 0.94949 0.91724 0.91926 0.89799 0.88977 0.87814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.64 10.45 36.01 0.38 -0.27 16 2 C 0.02 0.27 7.22 -82.47 -0.60 -0.33 16 3 C -0.19 -2.70 9.44 -38.98 -0.37 -3.07 16 4 C -0.03 -0.47 6.92 -82.06 -0.57 -1.03 16 5 C 0.60 10.12 7.85 -12.64 -0.10 10.02 16 6 O -0.55 -10.11 15.25 5.25 0.08 -10.03 16 7 N -0.60 -9.52 3.43 -173.23 -0.59 -10.12 16 8 C 0.14 2.14 6.82 -3.99 -0.03 2.11 16 9 C -0.12 -1.98 2.26 -92.71 -0.21 -2.19 16 10 H 0.10 2.09 6.05 -51.93 -0.31 1.77 16 11 C -0.13 -1.94 2.34 -90.40 -0.21 -2.16 16 12 H 0.07 1.00 6.31 -51.93 -0.33 0.67 16 13 C 0.11 1.65 4.68 -3.46 -0.02 1.63 16 14 C 0.18 3.20 4.42 -65.33 -0.29 2.91 16 15 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 16 C -0.13 -2.07 5.45 -24.61 -0.13 -2.21 16 17 C -0.11 -1.58 5.30 -25.39 -0.13 -1.72 16 18 C -0.08 -1.37 4.25 -89.58 -0.38 -1.75 16 19 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 20 C 0.16 3.30 3.80 -0.53 0.00 3.30 16 21 N -0.60 -13.06 1.70 -157.90 -0.27 -13.33 16 22 C -0.34 -8.76 9.74 -15.06 -0.15 -8.90 16 23 H 0.06 1.53 7.94 -52.49 -0.42 1.11 16 24 C -0.02 -0.59 4.91 -17.43 -0.09 -0.68 16 25 N -0.92 -26.30 12.69 55.49 0.70 -25.60 16 26 Si 1.06 24.69 29.98 -169.99 -5.10 19.59 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 29 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 30 N -0.26 -3.82 3.75 -63.88 -0.24 -4.06 16 31 C 0.09 1.02 10.60 59.84 0.63 1.66 16 32 N -0.28 -4.14 11.90 33.64 0.40 -3.74 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.17 2.21 4.70 -52.49 -0.25 1.96 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.08 1.33 6.84 -51.93 -0.36 0.97 16 40 H 0.07 0.88 7.23 -51.93 -0.38 0.51 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.07 1.23 7.32 -51.93 -0.38 0.85 16 43 H 0.05 0.70 6.93 -51.93 -0.36 0.34 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.03 0.71 6.25 -51.93 -0.32 0.39 16 46 H 0.06 1.55 7.28 -51.93 -0.38 1.17 16 47 H 0.27 7.61 5.99 -40.82 -0.24 7.37 16 48 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 49 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 50 H 0.10 1.18 6.75 -51.93 -0.35 0.83 16 LS Contribution 375.63 15.07 5.66 5.66 Total: -1.00 -31.03 375.63 -9.13 -40.17 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -7.52 Total: 4.12 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -2.26 Total: -2.67 kcal Atomic # 7 Polarization: -56.85 SS G_CDS: 0.00 Total: -56.85 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.08 Total: -10.03 kcal Atomic # 14 Polarization: 24.69 SS G_CDS: -5.10 Total: 19.59 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.03 -9.13 -40.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087341845.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.959 kcal (2) G-P(sol) polarization free energy of solvation -31.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds