Wall clock time and date at job start Wed Apr 1 2020 03:55:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39676 * 126.07018 * 2 1 4 4 C 1.38407 * 105.35860 * 180.14443 * 3 2 1 5 5 C 1.47152 * 126.88613 * 179.91407 * 4 3 2 6 6 O 1.21630 * 120.00706 * 175.69475 * 5 4 3 7 7 N 1.34777 * 119.99931 * 355.69278 * 5 4 3 8 8 C 1.49837 * 125.88559 * 174.80776 * 7 5 4 9 9 C 1.49333 * 102.29715 * 203.20612 * 8 7 5 10 10 H 1.09005 * 105.23138 * 65.28736 * 9 8 7 11 11 C 1.56046 * 101.39398 * 317.15867 * 9 8 7 12 12 H 1.09004 * 109.78733 * 291.22192 * 11 9 8 13 13 C 1.49142 * 125.88146 * 354.76130 * 7 5 4 14 14 C 1.51965 * 103.96555 * 173.83891 * 11 9 8 15 15 H 1.08996 * 114.19239 * 208.23632 * 14 11 9 16 16 C 1.56083 * 103.09974 * 83.98044 * 14 11 9 17 17 C 1.53897 * 106.97616 * 322.24791 * 16 14 11 18 18 C 1.49097 * 130.13558 * 192.56443 * 9 8 7 19 19 H 1.08999 * 113.75356 * 329.89351 * 18 9 8 20 20 C 1.56853 * 103.18842 * 206.76929 * 18 9 8 21 21 N 1.49078 * 103.45081 * 323.30661 * 20 18 9 22 22 C 1.36941 * 122.59311 * 144.08311 * 21 20 18 23 23 H 1.07995 * 119.99915 * 201.50115 * 22 21 20 24 24 C 1.38811 * 119.99580 * 21.49792 * 22 21 20 25 25 N 1.31616 * 120.00398 * 24.48179 * 24 22 21 26 26 Si 1.86800 * 119.99567 * 204.48208 * 24 22 21 27 27 H 1.48506 * 109.47083 * 179.97438 * 26 24 22 28 28 H 1.48501 * 109.47223 * 60.00206 * 26 24 22 29 29 H 1.48491 * 109.47309 * 299.99837 * 26 24 22 30 30 N 1.36605 * 106.23058 * 359.64994 * 4 3 2 31 31 C 1.46496 * 125.18825 * 180.24489 * 30 4 3 32 32 N 1.28443 * 109.62017 * 0.22746 * 30 4 3 33 33 H 1.08998 * 109.47263 * 270.27490 * 1 2 3 34 34 H 1.09003 * 109.46971 * 30.27047 * 1 2 3 35 35 H 1.08998 * 109.47082 * 150.27258 * 1 2 3 36 36 H 1.07995 * 127.32000 * 0.06083 * 3 2 1 37 37 H 1.09006 * 110.83461 * 85.00206 * 8 7 5 38 38 H 1.09004 * 110.83910 * 321.41320 * 8 7 5 39 39 H 1.08995 * 110.28896 * 67.66136 * 13 7 5 40 40 H 1.09001 * 110.29085 * 305.53565 * 13 7 5 41 41 H 1.09005 * 109.95091 * 81.61414 * 16 14 11 42 42 H 1.08999 * 109.95385 * 202.79178 * 16 14 11 43 43 H 1.09000 * 109.54176 * 86.11791 * 17 16 14 44 44 H 1.08993 * 109.54202 * 206.37323 * 17 16 14 45 45 H 1.09000 * 110.74081 * 204.81265 * 20 18 9 46 46 H 1.08998 * 110.59886 * 81.73697 * 20 18 9 47 47 H 0.97006 * 119.99661 * 4.88551 * 25 24 22 48 48 H 1.09003 * 109.47329 * 84.16098 * 31 30 4 49 49 H 1.09006 * 109.47027 * 204.15735 * 31 30 4 50 50 H 1.08998 * 109.47421 * 324.15812 * 31 30 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3294 1.1290 0.0000 4 6 3.6240 0.6395 -0.0034 5 6 4.8664 1.4280 -0.0065 6 8 5.9430 0.8672 0.0698 7 7 4.8114 2.7718 -0.0939 8 6 5.9786 3.7067 0.0010 9 6 5.3295 4.9841 0.4215 10 1 4.9317 4.7889 1.4174 11 6 4.0657 5.0036 -0.4936 12 1 4.3636 5.1562 -1.5309 13 6 3.5785 3.5845 -0.3027 14 6 3.2764 6.2060 -0.0032 15 1 2.1996 6.1240 -0.1512 16 6 3.9342 7.3970 -0.7681 17 6 5.4450 7.1107 -0.8314 18 6 5.8734 6.3719 0.4581 19 1 6.9475 6.4179 0.6378 20 6 5.0264 7.0586 1.5856 21 7 3.6707 6.4634 1.4121 22 6 2.8486 6.1800 2.4700 23 1 2.0544 5.4568 2.3581 24 6 3.0361 6.8225 3.6861 25 7 3.6311 7.9958 3.7258 26 14 2.4439 6.0216 5.2665 27 1 2.7622 6.9039 6.4179 28 1 3.1237 4.7133 5.4433 29 1 0.9758 5.8110 5.1947 30 7 3.5173 -0.7224 0.0028 31 6 4.6449 -1.6575 0.0072 32 7 2.2774 -1.0578 0.0047 33 1 -0.3634 0.0049 1.0276 34 1 -0.3633 0.8876 -0.5180 35 1 -0.3633 -0.8924 -0.5096 36 1 2.0207 2.1639 0.0009 37 1 6.4649 3.8193 -0.9681 38 1 6.6883 3.3656 0.7548 39 1 2.9315 3.5214 0.5722 40 1 3.0476 3.2443 -1.1919 41 1 3.5255 7.4625 -1.7765 42 1 3.7530 8.3287 -0.2323 43 1 5.6618 6.4865 -1.6982 44 1 5.9911 8.0505 -0.9116 45 1 4.9924 8.1382 1.4395 46 1 5.4286 6.8157 2.5691 47 1 3.8749 8.4441 2.9008 48 1 4.9913 -1.8043 1.0302 49 1 4.3261 -2.6131 -0.4091 50 1 5.4565 -1.2510 -0.5964 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087341845.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:18 Heat of formation + Delta-G solvation = 100.272697 kcal Electronic energy + Delta-G solvation = -32169.545506 eV Core-core repulsion = 28200.077017 eV Total energy + Delta-G solvation = -3969.468489 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -43.64526 -42.50630 -40.18515 -37.59737 -35.38345 -34.97324 -33.09347 -32.48849 -31.47815 -31.08194 -30.57518 -28.95866 -27.00846 -26.60086 -25.86696 -23.64852 -23.42573 -22.58005 -21.90174 -21.70739 -20.05760 -19.58026 -18.60382 -18.24312 -17.76794 -17.43841 -16.89769 -16.78248 -16.32551 -16.07670 -15.84404 -15.57287 -14.98987 -14.85253 -14.52418 -14.37666 -14.27152 -14.19325 -13.94018 -13.76535 -13.33176 -13.27738 -13.17763 -13.16570 -12.90599 -12.81367 -12.65192 -12.55351 -12.38383 -12.13631 -12.07088 -11.89451 -11.67633 -11.54726 -11.33114 -11.26611 -10.70576 -10.56015 -10.41846 -10.27835 -9.93200 -9.74975 -8.84923 -8.18175 -5.23278 0.11320 1.21007 1.47807 1.55316 1.61890 1.78876 1.90483 2.02409 2.64608 3.08499 3.25570 3.35969 3.41085 3.45442 3.75209 3.82216 3.99297 4.07595 4.19202 4.22578 4.25606 4.27174 4.31028 4.35041 4.43283 4.48987 4.53966 4.54918 4.57588 4.65901 4.76536 4.78825 4.86473 4.87331 4.88475 4.96058 5.01555 5.08632 5.09859 5.13022 5.16258 5.27026 5.40801 5.46933 5.50458 5.55773 5.71237 5.74023 5.85760 6.24529 6.45778 6.79066 7.00211 7.04280 7.80556 8.33513 9.13113 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010549 B = 0.004152 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2653.663350 B = 6742.849465 C = 7935.964277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.014 3.986 3 C -0.191 4.191 4 C -0.052 4.052 5 C 0.601 3.399 6 O -0.575 6.575 7 N -0.605 5.605 8 C 0.144 3.856 9 C -0.107 4.107 10 H 0.051 0.949 11 C -0.116 4.116 12 H 0.105 0.895 13 C 0.118 3.882 14 C 0.173 3.827 15 H 0.080 0.920 16 C -0.126 4.126 17 C -0.102 4.102 18 C -0.073 4.073 19 H 0.096 0.904 20 C 0.164 3.836 21 N -0.613 5.613 22 C -0.330 4.330 23 H 0.056 0.944 24 C -0.078 4.078 25 N -0.956 5.956 26 Si 1.100 2.900 27 H -0.296 1.296 28 H -0.293 1.293 29 H -0.274 1.274 30 N -0.268 5.268 31 C 0.087 3.913 32 N -0.293 5.293 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.181 0.819 37 H 0.091 0.909 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.099 0.901 41 H 0.087 0.913 42 H 0.038 0.962 43 H 0.086 0.914 44 H 0.066 0.934 45 H 0.015 0.985 46 H 0.019 0.981 47 H 0.258 0.742 48 H 0.087 0.913 49 H 0.117 0.883 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.371 -11.725 -14.182 18.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.142 4.142 3 C -0.220 4.220 4 C -0.180 4.180 5 C 0.390 3.610 6 O -0.457 6.457 7 N -0.337 5.337 8 C 0.023 3.977 9 C -0.127 4.127 10 H 0.070 0.930 11 C -0.136 4.136 12 H 0.123 0.877 13 C -0.003 4.003 14 C 0.067 3.933 15 H 0.098 0.902 16 C -0.164 4.164 17 C -0.139 4.139 18 C -0.093 4.093 19 H 0.114 0.886 20 C 0.039 3.961 21 N -0.338 5.338 22 C -0.460 4.460 23 H 0.073 0.927 24 C -0.274 4.274 25 N -0.600 5.600 26 Si 0.927 3.073 27 H -0.223 1.223 28 H -0.220 1.220 29 H -0.200 1.200 30 N -0.055 5.055 31 C -0.052 4.052 32 N -0.127 5.127 33 H 0.098 0.902 34 H 0.114 0.886 35 H 0.098 0.902 36 H 0.198 0.802 37 H 0.110 0.890 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.117 0.883 41 H 0.106 0.894 42 H 0.057 0.943 43 H 0.104 0.896 44 H 0.085 0.915 45 H 0.033 0.967 46 H 0.038 0.962 47 H 0.069 0.931 48 H 0.105 0.895 49 H 0.135 0.865 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.196 -13.235 -12.425 18.154 hybrid contribution 0.144 0.952 -0.757 1.225 sum 0.340 -12.283 -13.183 18.021 Atomic orbital electron populations 1.20228 0.83902 1.04485 1.03709 1.22648 0.98731 0.88254 1.04570 1.22923 0.90014 1.01811 1.07257 1.21334 0.95745 0.85794 1.15106 1.16639 0.86639 0.81040 0.76682 1.90740 1.30810 1.70551 1.53589 1.49376 1.10826 1.03849 1.69650 1.21134 0.87207 0.87315 1.02013 1.20824 0.96851 0.93401 1.01602 0.93034 1.22665 0.97328 0.93155 1.00482 0.87726 1.21951 0.86143 0.90696 1.01543 1.21488 0.96583 0.92291 0.82954 0.90201 1.22757 0.96093 0.97466 1.00128 1.22034 0.95083 1.00170 0.96649 1.21555 0.99062 0.92170 0.96473 0.88626 1.22070 0.84723 0.93995 0.95320 1.45720 1.12894 1.73767 1.01391 1.20107 1.14037 1.19176 0.92730 0.92655 1.26653 1.01533 0.95499 1.03692 1.70893 1.45463 1.12930 1.30728 0.83008 0.76292 0.74297 0.73674 1.22280 1.22027 1.20031 1.45786 1.05602 1.04330 1.49793 1.22414 0.84808 0.92765 1.05191 1.73093 0.89669 1.28557 1.21427 0.90151 0.88633 0.90152 0.80225 0.89049 0.91638 0.91946 0.88294 0.89435 0.94337 0.89583 0.91485 0.96688 0.96222 0.93129 0.89482 0.86482 0.88291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.12 10.45 71.24 0.74 -0.37 16 2 C 0.01 0.35 7.22 43.05 0.31 0.66 16 3 C -0.19 -5.15 9.44 22.66 0.21 -4.94 16 4 C -0.05 -1.56 6.92 40.78 0.28 -1.27 16 5 C 0.60 19.51 7.85 86.58 0.68 20.19 16 6 O -0.58 -20.65 15.25 -4.13 -0.06 -20.72 16 7 N -0.60 -18.08 3.43 -820.24 -2.81 -20.89 16 8 C 0.14 4.11 6.82 84.56 0.58 4.68 16 9 C -0.11 -3.36 2.26 -12.15 -0.03 -3.38 16 10 H 0.05 2.16 6.05 -2.38 -0.01 2.15 16 11 C -0.12 -3.16 2.34 -10.65 -0.02 -3.19 16 12 H 0.10 2.31 6.31 -2.38 -0.02 2.29 16 13 C 0.12 3.16 4.68 85.30 0.40 3.56 16 14 C 0.17 5.80 4.42 45.21 0.20 6.00 16 15 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 16 C -0.13 -3.61 5.45 31.97 0.17 -3.44 16 17 C -0.10 -2.56 5.30 31.46 0.17 -2.39 16 18 C -0.07 -2.26 4.25 -10.12 -0.04 -2.30 16 19 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 20 C 0.16 7.08 3.80 87.23 0.33 7.41 16 21 N -0.61 -27.28 1.70 -653.46 -1.11 -28.39 16 22 C -0.33 -17.32 9.74 84.03 0.82 -16.50 16 23 H 0.06 2.89 7.94 -2.91 -0.02 2.86 16 24 C -0.08 -4.32 4.91 84.86 0.42 -3.90 16 25 N -0.96 -57.24 12.69 21.65 0.27 -56.96 16 26 Si 1.10 51.49 29.98 68.60 2.06 53.55 16 27 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 28 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 29 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 30 N -0.27 -7.51 3.75 -356.03 -1.33 -8.84 16 31 C 0.09 1.86 10.60 127.77 1.35 3.21 16 32 N -0.29 -8.18 11.90 -47.49 -0.57 -8.74 16 33 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.18 4.33 4.70 -2.91 -0.01 4.32 16 37 H 0.09 2.17 8.14 -2.38 -0.02 2.15 16 38 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 39 H 0.06 1.95 6.84 -2.39 -0.02 1.93 16 40 H 0.10 2.13 7.23 -2.39 -0.02 2.11 16 41 H 0.09 1.95 8.14 -2.38 -0.02 1.93 16 42 H 0.04 1.34 7.32 -2.39 -0.02 1.32 16 43 H 0.09 1.70 6.93 -2.39 -0.02 1.68 16 44 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.02 0.70 6.25 -2.39 -0.01 0.69 16 46 H 0.02 1.00 7.28 -2.39 -0.02 0.98 16 47 H 0.26 15.44 5.99 -92.70 -0.56 14.88 16 48 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 49 H 0.12 1.82 8.14 -2.38 -0.02 1.80 16 50 H 0.10 2.20 6.75 -2.39 -0.02 2.18 16 Total: -1.00 -70.97 375.63 4.18 -66.78 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: 1.17 Total: 20.19 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: 6.57 Total: 4.03 kcal Atomic # 7 Polarization: -118.28 SS G_CDS: -5.55 Total: -123.83 kcal Atomic # 8 Polarization: -20.65 SS G_CDS: -0.06 Total: -20.72 kcal Atomic # 14 Polarization: 51.49 SS G_CDS: 2.06 Total: 53.55 kcal Total: -70.97 4.18 -66.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087341845.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.056 kcal (2) G-P(sol) polarization free energy of solvation -70.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds