Wall clock time and date at job start Wed Apr 1 2020 03:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39672 * 126.07227 * 2 1 4 4 C 1.38407 * 105.36109 * 179.97438 * 3 2 1 5 5 C 1.47162 * 126.88235 * 180.02562 * 4 3 2 6 6 O 1.21634 * 119.99753 * 168.81964 * 5 4 3 7 7 N 1.34770 * 120.00021 * 348.81330 * 5 4 3 8 8 C 1.48162 * 127.83633 * 179.97438 * 7 5 4 9 9 C 1.54378 * 104.58344 * 140.41124 * 8 7 5 10 10 H 1.09005 * 110.81500 * 263.74357 * 9 8 7 11 11 C 1.55258 * 104.68821 * 23.96532 * 9 8 7 12 12 H 1.09004 * 110.86490 * 239.11746 * 11 9 8 13 13 C 1.48142 * 127.83987 * 359.94203 * 7 5 4 14 14 C 1.53289 * 108.76445 * 116.87375 * 11 9 8 15 15 H 1.08997 * 110.48951 * 181.90381 * 14 11 9 16 16 C 1.53316 * 109.20187 * 60.17401 * 14 11 9 17 17 C 1.52935 * 109.59806 * 299.10726 * 16 14 11 18 18 C 1.52978 * 109.07254 * 141.57533 * 9 8 7 19 19 H 1.08993 * 109.63521 * 66.11247 * 18 9 8 20 20 C 1.53614 * 109.29620 * 305.30264 * 18 9 8 21 21 N 1.47633 * 106.73334 * 300.60158 * 20 18 9 22 22 C 1.36941 * 122.06102 * 179.84803 * 21 20 18 23 23 H 1.07998 * 120.00240 * 174.05575 * 22 21 20 24 24 C 1.38818 * 120.00032 * 354.32376 * 22 21 20 25 25 N 1.31620 * 119.99524 * 7.68603 * 24 22 21 26 26 Si 1.86792 * 120.00206 * 187.68201 * 24 22 21 27 27 H 1.48504 * 109.46965 * 94.99151 * 26 24 22 28 28 H 1.48500 * 109.47398 * 214.98840 * 26 24 22 29 29 H 1.48498 * 109.47212 * 334.99163 * 26 24 22 30 30 N 1.36594 * 106.23194 * 0.26340 * 4 3 2 31 31 C 1.46506 * 125.19273 * 179.74011 * 30 4 3 32 32 N 1.28447 * 109.62173 * 359.55361 * 30 4 3 33 33 H 1.09004 * 109.46771 * 89.99188 * 1 2 3 34 34 H 1.08995 * 109.47220 * 209.99449 * 1 2 3 35 35 H 1.08999 * 109.47052 * 330.00030 * 1 2 3 36 36 H 1.08003 * 127.31781 * 359.95013 * 3 2 1 37 37 H 1.09004 * 110.41452 * 21.63315 * 8 7 5 38 38 H 1.08996 * 110.41435 * 259.19177 * 8 7 5 39 39 H 1.08999 * 110.40445 * 338.29546 * 13 7 5 40 40 H 1.09001 * 110.41005 * 100.60514 * 13 7 5 41 41 H 1.08997 * 109.45550 * 59.14950 * 16 14 11 42 42 H 1.09003 * 109.44705 * 179.07250 * 16 14 11 43 43 H 1.08996 * 109.38181 * 120.81252 * 17 16 14 44 44 H 1.08997 * 109.38310 * 240.49194 * 17 16 14 45 45 H 1.08998 * 110.12501 * 181.21832 * 20 18 9 46 46 H 1.09007 * 109.87185 * 59.84013 * 20 18 9 47 47 H 0.96999 * 119.99788 * 179.97438 * 25 24 22 48 48 H 1.08992 * 109.47337 * 91.33641 * 31 30 4 49 49 H 1.09001 * 109.46944 * 211.34158 * 31 30 4 50 50 H 1.09000 * 109.46277 * 331.33390 * 31 30 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3294 1.1289 0.0000 4 6 3.6240 0.6394 0.0006 5 6 4.8664 1.4281 0.0014 6 8 5.9336 0.8815 0.2061 7 7 4.8219 2.7559 -0.2249 8 6 5.9548 3.7100 -0.2628 9 6 5.6199 4.6650 -1.4286 10 1 6.1222 4.3505 -2.3435 11 6 4.0762 4.5838 -1.5729 12 1 3.7968 4.2448 -2.5705 13 6 3.6290 3.5927 -0.4927 14 6 3.4799 5.9645 -1.2765 15 1 2.3922 5.9314 -1.3371 16 6 4.0425 6.9819 -2.2760 17 6 5.5628 7.0593 -2.1285 18 6 6.0336 6.0868 -1.0446 19 1 7.1182 6.1400 -0.9508 20 6 5.3685 6.4669 0.2869 21 7 3.9105 6.3681 0.0772 22 6 3.0125 6.6397 1.0747 23 1 1.9541 6.6506 0.8604 24 6 3.4630 6.9065 2.3604 25 7 4.7513 7.0481 2.5901 26 14 2.2410 7.0646 3.7643 27 1 2.1152 5.7589 4.4604 28 1 2.7190 8.0927 4.7233 29 1 0.9173 7.4677 3.2253 30 7 3.5173 -0.7223 -0.0051 31 6 4.6450 -1.6576 -0.0121 32 7 2.2775 -1.0579 0.0005 33 1 -0.3633 0.0001 -1.0277 34 1 -0.3633 -0.8900 0.5137 35 1 -0.3633 0.8900 0.5138 36 1 2.0206 2.1639 -0.0007 37 1 6.8889 3.1834 -0.4590 38 1 6.0185 4.2621 0.6748 39 1 2.8090 2.9777 -0.8635 40 1 3.3268 4.1237 0.4099 41 1 3.7916 6.6713 -3.2902 42 1 3.6084 7.9622 -2.0792 43 1 6.0320 6.7984 -3.0770 44 1 5.8482 8.0743 -1.8525 45 1 5.6373 7.4866 0.5628 46 1 5.6806 5.7738 1.0682 47 1 5.0660 7.2349 3.4884 48 1 4.9120 -1.9125 1.0134 49 1 4.3630 -2.5627 -0.5499 50 1 5.4990 -1.1932 -0.5052 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087341846.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:23 Heat of formation + Delta-G solvation = 95.614897 kcal Electronic energy + Delta-G solvation = -32408.060587 eV Core-core repulsion = 28438.390121 eV Total energy + Delta-G solvation = -3969.670466 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.49483 -40.55964 -38.57206 -35.74794 -33.97541 -33.41998 -31.92818 -31.27988 -29.91284 -29.78544 -29.65918 -27.07527 -25.69813 -25.31108 -24.64282 -22.21564 -21.92652 -21.16254 -21.02375 -20.30301 -18.79175 -17.53880 -16.80036 -16.56044 -16.30378 -15.84112 -15.72194 -15.19882 -15.08202 -14.46755 -14.29202 -14.16447 -13.76306 -13.51923 -13.36019 -13.18332 -12.82978 -12.48595 -12.43369 -12.31670 -12.27370 -12.22666 -11.95314 -11.83028 -11.50968 -11.22469 -11.12469 -10.96532 -10.70641 -10.63055 -10.55309 -10.43830 -10.17657 -9.88319 -9.83700 -9.73555 -9.30130 -9.22453 -9.03950 -8.79945 -8.51808 -8.27431 -6.89722 -5.73163 -3.08970 1.38280 2.39081 2.58991 3.27866 3.36358 3.37173 3.42894 3.45460 4.44225 4.45909 4.52423 4.93412 5.01022 5.06671 5.11697 5.14164 5.20470 5.34111 5.41515 5.44279 5.47471 5.59079 5.62534 5.67906 5.69144 5.73098 5.76644 5.84414 5.88049 5.90970 5.98185 6.03848 6.08631 6.22037 6.31726 6.34665 6.39332 6.48070 6.57740 6.58781 6.67835 6.69422 6.77054 6.78314 6.94781 6.98450 7.59575 7.65507 7.79195 7.86583 8.07997 8.26445 8.29390 9.20014 9.81301 10.35620 11.32247 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010284 B = 0.004410 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2722.019026 B = 6348.312463 C = 7481.087697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.020 3.980 3 C -0.195 4.195 4 C -0.024 4.024 5 C 0.605 3.395 6 O -0.558 6.558 7 N -0.595 5.595 8 C 0.107 3.893 9 C -0.081 4.081 10 H 0.067 0.933 11 C -0.109 4.109 12 H 0.070 0.930 13 C 0.088 3.912 14 C 0.178 3.822 15 H 0.069 0.931 16 C -0.128 4.128 17 C -0.100 4.100 18 C -0.112 4.112 19 H 0.065 0.935 20 C 0.196 3.804 21 N -0.597 5.597 22 C -0.239 4.239 23 H 0.076 0.924 24 C -0.002 4.002 25 N -0.918 5.918 26 Si 0.903 3.097 27 H -0.290 1.290 28 H -0.293 1.293 29 H -0.281 1.281 30 N -0.263 5.263 31 C 0.091 3.909 32 N -0.284 5.284 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.176 0.824 37 H 0.070 0.930 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.112 0.888 41 H 0.047 0.953 42 H 0.060 0.940 43 H 0.044 0.956 44 H 0.056 0.944 45 H 0.048 0.952 46 H 0.059 0.941 47 H 0.251 0.749 48 H 0.083 0.917 49 H 0.089 0.911 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.228 -9.465 -9.564 13.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.137 4.137 3 C -0.223 4.223 4 C -0.152 4.152 5 C 0.392 3.608 6 O -0.439 6.439 7 N -0.325 5.325 8 C -0.014 4.014 9 C -0.100 4.100 10 H 0.086 0.914 11 C -0.131 4.131 12 H 0.089 0.911 13 C -0.033 4.033 14 C 0.069 3.931 15 H 0.087 0.913 16 C -0.167 4.167 17 C -0.138 4.138 18 C -0.132 4.132 19 H 0.084 0.916 20 C 0.073 3.927 21 N -0.321 5.321 22 C -0.368 4.368 23 H 0.094 0.906 24 C -0.199 4.199 25 N -0.565 5.565 26 Si 0.733 3.267 27 H -0.217 1.217 28 H -0.219 1.219 29 H -0.207 1.207 30 N -0.050 5.050 31 C -0.049 4.049 32 N -0.118 5.118 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.193 0.807 37 H 0.089 0.911 38 H 0.116 0.884 39 H 0.098 0.902 40 H 0.129 0.871 41 H 0.066 0.934 42 H 0.078 0.922 43 H 0.063 0.937 44 H 0.075 0.925 45 H 0.066 0.934 46 H 0.077 0.923 47 H 0.062 0.938 48 H 0.101 0.899 49 H 0.108 0.892 50 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -1.487 -11.065 -9.215 14.476 hybrid contribution -0.422 0.997 0.824 1.361 sum -1.909 -10.068 -8.391 13.245 Atomic orbital electron populations 1.20077 0.86456 1.03212 1.02635 1.22035 0.97087 0.88898 1.05647 1.22764 0.90364 1.00981 1.08171 1.21351 0.95858 0.85010 1.12984 1.16367 0.86289 0.80551 0.77551 1.90751 1.30702 1.70243 1.52187 1.48577 1.11404 1.05008 1.67550 1.22757 0.88650 0.89133 1.00891 1.22117 0.95785 0.95320 0.96798 0.91447 1.22664 0.95299 0.97799 0.97323 0.91149 1.23007 0.87357 0.91638 1.01342 1.20551 0.96560 0.89753 0.86228 0.91262 1.22007 0.95915 1.00583 0.98202 1.21330 0.96020 0.99130 0.97284 1.21800 0.99492 0.92937 0.98957 0.91641 1.21276 0.81700 1.00337 0.89413 1.44612 1.02305 1.79130 1.06041 1.19238 0.88766 1.41183 0.87578 0.90632 1.24769 0.95939 1.01767 0.97389 1.70021 1.11712 1.54686 1.20073 0.86246 0.80301 0.77361 0.82755 1.21712 1.21937 1.20670 1.45465 1.05021 1.04272 1.50234 1.22242 0.85775 0.92311 1.04596 1.73074 0.89470 1.27958 1.21277 0.90926 0.91214 0.90339 0.80707 0.91099 0.88429 0.90153 0.87058 0.93411 0.92152 0.93706 0.92543 0.93396 0.92341 0.93811 0.89864 0.89201 0.87567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.66 10.45 36.00 0.38 -0.28 16 2 C 0.02 0.28 7.22 -82.47 -0.60 -0.32 16 3 C -0.19 -2.90 9.30 -38.98 -0.36 -3.27 16 4 C -0.02 -0.39 6.89 -82.06 -0.57 -0.96 16 5 C 0.60 10.86 7.85 -12.64 -0.10 10.76 16 6 O -0.56 -10.92 15.14 5.25 0.08 -10.84 16 7 N -0.59 -10.34 3.32 -171.35 -0.57 -10.91 16 8 C 0.11 1.86 6.35 -2.41 -0.02 1.84 16 9 C -0.08 -1.27 3.15 -88.71 -0.28 -1.55 16 10 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 11 C -0.11 -1.70 3.19 -89.13 -0.28 -1.98 16 12 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 13 C 0.09 1.44 5.29 -3.00 -0.02 1.42 16 14 C 0.18 3.08 3.01 -66.98 -0.20 2.88 16 15 H 0.07 1.17 8.00 -51.93 -0.42 0.76 16 16 C -0.13 -2.01 5.86 -26.60 -0.16 -2.17 16 17 C -0.10 -1.56 5.65 -26.74 -0.15 -1.71 16 18 C -0.11 -1.90 2.87 -90.29 -0.26 -2.16 16 19 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 20 C 0.20 4.22 4.02 -3.10 -0.01 4.21 16 21 N -0.60 -12.81 1.96 -163.14 -0.32 -13.13 16 22 C -0.24 -5.84 9.22 -15.06 -0.14 -5.98 16 23 H 0.08 1.80 7.81 -52.49 -0.41 1.39 16 24 C 0.00 -0.05 5.46 -17.43 -0.10 -0.15 16 25 N -0.92 -24.88 9.83 55.49 0.55 -24.33 16 26 Si 0.90 20.95 29.56 -169.99 -5.02 15.93 16 27 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 29 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 30 N -0.26 -3.99 3.75 -63.88 -0.24 -4.23 16 31 C 0.09 1.06 10.76 59.85 0.64 1.71 16 32 N -0.28 -4.31 11.90 33.64 0.40 -3.91 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.18 2.41 5.11 -52.48 -0.27 2.14 16 37 H 0.07 1.19 7.88 -51.93 -0.41 0.79 16 38 H 0.10 1.94 5.31 -51.93 -0.28 1.67 16 39 H 0.08 1.15 4.51 -51.93 -0.23 0.92 16 40 H 0.11 2.18 6.30 -51.93 -0.33 1.85 16 41 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 45 H 0.05 1.19 7.36 -51.93 -0.38 0.81 16 46 H 0.06 1.41 4.78 -51.92 -0.25 1.16 16 47 H 0.25 6.79 8.31 -40.82 -0.34 6.45 16 48 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 49 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 50 H 0.11 1.30 6.52 -51.93 -0.34 0.96 16 LS Contribution 372.91 15.07 5.62 5.62 Total: -1.00 -29.56 372.91 -9.24 -38.80 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -7.52 Total: 4.70 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -2.21 Total: 2.30 kcal Atomic # 7 Polarization: -56.33 SS G_CDS: -0.18 Total: -56.51 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.08 Total: -10.84 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.56 -9.24 -38.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087341846.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.413 kcal (2) G-P(sol) polarization free energy of solvation -29.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds