Wall clock time and date at job start Wed Apr 1 2020 03:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39672 * 126.07227 * 2 1 4 4 C 1.38407 * 105.36109 * 179.97438 * 3 2 1 5 5 C 1.47162 * 126.88235 * 180.02562 * 4 3 2 6 6 O 1.21634 * 119.99753 * 168.81964 * 5 4 3 7 7 N 1.34770 * 120.00021 * 348.81330 * 5 4 3 8 8 C 1.48162 * 127.83633 * 179.97438 * 7 5 4 9 9 C 1.54378 * 104.58344 * 140.41124 * 8 7 5 10 10 H 1.09005 * 110.81500 * 263.74357 * 9 8 7 11 11 C 1.55258 * 104.68821 * 23.96532 * 9 8 7 12 12 H 1.09004 * 110.86490 * 239.11746 * 11 9 8 13 13 C 1.48142 * 127.83987 * 359.94203 * 7 5 4 14 14 C 1.53289 * 108.76445 * 116.87375 * 11 9 8 15 15 H 1.08997 * 110.48951 * 181.90381 * 14 11 9 16 16 C 1.53316 * 109.20187 * 60.17401 * 14 11 9 17 17 C 1.52935 * 109.59806 * 299.10726 * 16 14 11 18 18 C 1.52978 * 109.07254 * 141.57533 * 9 8 7 19 19 H 1.08993 * 109.63521 * 66.11247 * 18 9 8 20 20 C 1.53614 * 109.29620 * 305.30264 * 18 9 8 21 21 N 1.47633 * 106.73334 * 300.60158 * 20 18 9 22 22 C 1.36941 * 122.06102 * 179.84803 * 21 20 18 23 23 H 1.07998 * 120.00240 * 174.05575 * 22 21 20 24 24 C 1.38818 * 120.00032 * 354.32376 * 22 21 20 25 25 N 1.31620 * 119.99524 * 7.68603 * 24 22 21 26 26 Si 1.86792 * 120.00206 * 187.68201 * 24 22 21 27 27 H 1.48504 * 109.46965 * 94.99151 * 26 24 22 28 28 H 1.48500 * 109.47398 * 214.98840 * 26 24 22 29 29 H 1.48498 * 109.47212 * 334.99163 * 26 24 22 30 30 N 1.36594 * 106.23194 * 0.26340 * 4 3 2 31 31 C 1.46506 * 125.19273 * 179.74011 * 30 4 3 32 32 N 1.28447 * 109.62173 * 359.55361 * 30 4 3 33 33 H 1.09004 * 109.46771 * 89.99188 * 1 2 3 34 34 H 1.08995 * 109.47220 * 209.99449 * 1 2 3 35 35 H 1.08999 * 109.47052 * 330.00030 * 1 2 3 36 36 H 1.08003 * 127.31781 * 359.95013 * 3 2 1 37 37 H 1.09004 * 110.41452 * 21.63315 * 8 7 5 38 38 H 1.08996 * 110.41435 * 259.19177 * 8 7 5 39 39 H 1.08999 * 110.40445 * 338.29546 * 13 7 5 40 40 H 1.09001 * 110.41005 * 100.60514 * 13 7 5 41 41 H 1.08997 * 109.45550 * 59.14950 * 16 14 11 42 42 H 1.09003 * 109.44705 * 179.07250 * 16 14 11 43 43 H 1.08996 * 109.38181 * 120.81252 * 17 16 14 44 44 H 1.08997 * 109.38310 * 240.49194 * 17 16 14 45 45 H 1.08998 * 110.12501 * 181.21832 * 20 18 9 46 46 H 1.09007 * 109.87185 * 59.84013 * 20 18 9 47 47 H 0.96999 * 119.99788 * 179.97438 * 25 24 22 48 48 H 1.08992 * 109.47337 * 91.33641 * 31 30 4 49 49 H 1.09001 * 109.46944 * 211.34158 * 31 30 4 50 50 H 1.09000 * 109.46277 * 331.33390 * 31 30 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3294 1.1289 0.0000 4 6 3.6240 0.6394 0.0006 5 6 4.8664 1.4281 0.0014 6 8 5.9336 0.8815 0.2061 7 7 4.8219 2.7559 -0.2249 8 6 5.9548 3.7100 -0.2628 9 6 5.6199 4.6650 -1.4286 10 1 6.1222 4.3505 -2.3435 11 6 4.0762 4.5838 -1.5729 12 1 3.7968 4.2448 -2.5705 13 6 3.6290 3.5927 -0.4927 14 6 3.4799 5.9645 -1.2765 15 1 2.3922 5.9314 -1.3371 16 6 4.0425 6.9819 -2.2760 17 6 5.5628 7.0593 -2.1285 18 6 6.0336 6.0868 -1.0446 19 1 7.1182 6.1400 -0.9508 20 6 5.3685 6.4669 0.2869 21 7 3.9105 6.3681 0.0772 22 6 3.0125 6.6397 1.0747 23 1 1.9541 6.6506 0.8604 24 6 3.4630 6.9065 2.3604 25 7 4.7513 7.0481 2.5901 26 14 2.2410 7.0646 3.7643 27 1 2.1152 5.7589 4.4604 28 1 2.7190 8.0927 4.7233 29 1 0.9173 7.4677 3.2253 30 7 3.5173 -0.7223 -0.0051 31 6 4.6450 -1.6576 -0.0121 32 7 2.2775 -1.0579 0.0005 33 1 -0.3633 0.0001 -1.0277 34 1 -0.3633 -0.8900 0.5137 35 1 -0.3633 0.8900 0.5138 36 1 2.0206 2.1639 -0.0007 37 1 6.8889 3.1834 -0.4590 38 1 6.0185 4.2621 0.6748 39 1 2.8090 2.9777 -0.8635 40 1 3.3268 4.1237 0.4099 41 1 3.7916 6.6713 -3.2902 42 1 3.6084 7.9622 -2.0792 43 1 6.0320 6.7984 -3.0770 44 1 5.8482 8.0743 -1.8525 45 1 5.6373 7.4866 0.5628 46 1 5.6806 5.7738 1.0682 47 1 5.0660 7.2349 3.4884 48 1 4.9120 -1.9125 1.0134 49 1 4.3630 -2.5627 -0.5499 50 1 5.4990 -1.1932 -0.5052 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087341846.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:21 Heat of formation + Delta-G solvation = 79.306822 kcal Electronic energy + Delta-G solvation = -32408.767758 eV Core-core repulsion = 28438.390121 eV Total energy + Delta-G solvation = -3970.377638 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.62815 -41.94940 -39.98220 -37.17023 -35.23624 -34.93855 -33.34750 -32.57649 -31.55388 -31.13776 -30.55866 -28.47632 -27.16605 -26.63753 -25.91603 -23.70002 -23.37776 -22.43130 -22.38381 -21.58770 -19.98756 -19.19632 -18.16684 -17.82412 -17.52256 -17.18890 -17.09495 -16.84535 -16.40384 -15.89955 -15.83795 -15.62826 -15.00379 -14.64959 -14.44120 -14.35133 -14.18529 -13.86708 -13.85424 -13.40197 -13.32790 -13.30537 -13.20502 -13.13472 -13.07828 -12.86026 -12.55441 -12.50039 -12.37049 -12.14296 -12.00952 -11.79471 -11.65314 -11.60306 -11.25327 -11.14351 -10.70723 -10.62064 -10.41758 -10.25208 -9.88467 -9.66836 -8.72040 -7.68804 -5.02998 0.14160 1.26800 1.48149 1.49605 1.50708 1.56991 2.00807 2.06334 2.56498 3.22941 3.44820 3.45993 3.63142 3.70502 3.79270 3.93166 4.02682 4.15007 4.24478 4.29746 4.35740 4.36500 4.40922 4.46803 4.54746 4.57694 4.58173 4.63003 4.66553 4.71580 4.89215 4.90896 4.95715 5.00325 5.01809 5.04186 5.11850 5.15933 5.27780 5.34016 5.34933 5.45739 5.51657 5.60068 5.62680 5.73336 5.74972 5.88830 6.03201 6.37697 6.43142 6.84687 7.02497 7.27020 7.99352 8.49609 9.34357 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010284 B = 0.004410 C = 0.003742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2722.019026 B = 6348.312463 C = 7481.087697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.017 3.983 3 C -0.195 4.195 4 C -0.047 4.047 5 C 0.601 3.399 6 O -0.582 6.582 7 N -0.596 5.596 8 C 0.108 3.892 9 C -0.071 4.071 10 H 0.098 0.902 11 C -0.100 4.100 12 H 0.108 0.892 13 C 0.094 3.906 14 C 0.170 3.830 15 H 0.077 0.923 16 C -0.123 4.123 17 C -0.097 4.097 18 C -0.105 4.105 19 H 0.073 0.927 20 C 0.209 3.791 21 N -0.607 5.607 22 C -0.225 4.225 23 H 0.084 0.916 24 C -0.061 4.061 25 N -0.947 5.947 26 Si 0.953 3.047 27 H -0.299 1.299 28 H -0.307 1.307 29 H -0.265 1.265 30 N -0.267 5.267 31 C 0.086 3.914 32 N -0.293 5.293 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.184 0.816 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.105 0.895 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.044 0.956 43 H 0.079 0.921 44 H 0.042 0.958 45 H 0.002 0.998 46 H 0.024 0.976 47 H 0.238 0.762 48 H 0.088 0.912 49 H 0.117 0.883 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.005 -10.703 -12.686 17.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.139 4.139 3 C -0.224 4.224 4 C -0.175 4.175 5 C 0.390 3.610 6 O -0.464 6.464 7 N -0.326 5.326 8 C -0.014 4.014 9 C -0.090 4.090 10 H 0.116 0.884 11 C -0.121 4.121 12 H 0.126 0.874 13 C -0.028 4.028 14 C 0.063 3.937 15 H 0.095 0.905 16 C -0.162 4.162 17 C -0.134 4.134 18 C -0.125 4.125 19 H 0.091 0.909 20 C 0.085 3.915 21 N -0.330 5.330 22 C -0.354 4.354 23 H 0.102 0.898 24 C -0.254 4.254 25 N -0.597 5.597 26 Si 0.784 3.216 27 H -0.227 1.227 28 H -0.234 1.234 29 H -0.189 1.189 30 N -0.055 5.055 31 C -0.053 4.053 32 N -0.128 5.128 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.201 0.799 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.123 0.877 40 H 0.093 0.907 41 H 0.104 0.896 42 H 0.062 0.938 43 H 0.097 0.903 44 H 0.061 0.939 45 H 0.021 0.979 46 H 0.042 0.958 47 H 0.048 0.952 48 H 0.107 0.893 49 H 0.135 0.865 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.302 -12.307 -12.385 17.770 hybrid contribution 0.098 1.339 1.801 2.246 sum -3.204 -10.968 -10.584 15.575 Atomic orbital electron populations 1.20236 0.83729 1.04176 1.04141 1.22659 0.98765 0.88096 1.04360 1.22928 0.90004 1.01707 1.07723 1.21282 0.95612 0.85817 1.14819 1.16645 0.86650 0.80723 0.76985 1.90727 1.31724 1.70744 1.53212 1.48632 1.11655 1.04990 1.67371 1.22637 0.89174 0.89394 1.00200 1.22106 0.96371 0.93572 0.96942 0.88391 1.22637 0.94671 0.96131 0.98666 0.87416 1.22903 0.87804 0.91875 1.00185 1.20855 0.97381 0.91202 0.84241 0.90491 1.21943 0.95567 0.99142 0.99511 1.21320 0.96281 0.97868 0.97979 1.21668 0.99568 0.94415 0.96821 0.90897 1.20830 0.82435 0.96848 0.91422 1.44796 1.01923 1.78858 1.07466 1.19599 0.89661 1.38063 0.88125 0.89801 1.25374 0.96957 1.03563 0.99502 1.70252 1.13118 1.57142 1.19223 0.85419 0.79494 0.76229 0.80454 1.22685 1.23436 1.18942 1.45771 1.05645 1.04193 1.49849 1.22426 0.84876 0.92694 1.05308 1.73091 0.89587 1.28500 1.21577 0.89054 0.90513 0.89135 0.79939 0.90823 0.91917 0.87703 0.90743 0.89623 0.93759 0.90268 0.93894 0.97931 0.95780 0.95226 0.89342 0.86498 0.88382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.10 10.45 71.23 0.74 -0.36 16 2 C 0.02 0.45 7.22 43.05 0.31 0.76 16 3 C -0.20 -5.48 9.30 22.66 0.21 -5.27 16 4 C -0.05 -1.50 6.89 40.79 0.28 -1.22 16 5 C 0.60 21.42 7.85 86.59 0.68 22.10 16 6 O -0.58 -22.92 15.14 -4.14 -0.06 -22.99 16 7 N -0.60 -20.41 3.32 -814.28 -2.70 -23.11 16 8 C 0.11 3.74 6.35 86.53 0.55 4.29 16 9 C -0.07 -2.06 3.15 -9.56 -0.03 -2.09 16 10 H 0.10 2.38 8.14 -2.38 -0.02 2.36 16 11 C -0.10 -2.78 3.19 -9.83 -0.03 -2.81 16 12 H 0.11 2.34 8.14 -2.39 -0.02 2.32 16 13 C 0.09 2.91 5.29 86.15 0.46 3.37 16 14 C 0.17 5.48 3.01 44.97 0.14 5.61 16 15 H 0.08 2.37 8.00 -2.39 -0.02 2.35 16 16 C -0.12 -3.44 5.86 30.68 0.18 -3.26 16 17 C -0.10 -2.75 5.65 30.59 0.17 -2.58 16 18 C -0.11 -3.46 2.87 -10.58 -0.03 -3.49 16 19 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 20 C 0.21 9.35 4.02 86.37 0.35 9.70 16 21 N -0.61 -26.19 1.96 -670.07 -1.31 -27.50 16 22 C -0.22 -11.11 9.22 84.03 0.77 -10.33 16 23 H 0.08 3.93 7.81 -2.91 -0.02 3.91 16 24 C -0.06 -3.27 5.46 84.86 0.46 -2.81 16 25 N -0.95 -54.49 9.83 21.65 0.21 -54.27 16 26 Si 0.95 44.38 29.56 68.60 2.03 46.41 16 27 H -0.30 -14.18 7.11 99.48 0.71 -13.48 16 28 H -0.31 -14.86 7.11 99.48 0.71 -14.15 16 29 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 30 N -0.27 -7.78 3.75 -356.02 -1.33 -9.12 16 31 C 0.09 1.93 10.76 127.77 1.37 3.30 16 32 N -0.29 -8.35 11.90 -47.49 -0.57 -8.92 16 33 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.09 1.33 8.14 -2.39 -0.02 1.32 16 36 H 0.18 4.67 5.11 -2.91 -0.01 4.66 16 37 H 0.07 2.48 7.88 -2.39 -0.02 2.46 16 38 H 0.06 2.65 5.31 -2.39 -0.01 2.64 16 39 H 0.11 2.73 4.51 -2.39 -0.01 2.72 16 40 H 0.07 2.92 6.30 -2.39 -0.02 2.90 16 41 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.00 0.13 7.36 -2.39 -0.02 0.12 16 46 H 0.02 1.25 4.78 -2.38 -0.01 1.24 16 47 H 0.24 13.76 8.31 -92.71 -0.77 12.99 16 48 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 49 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 50 H 0.10 2.36 6.52 -2.39 -0.02 2.35 16 Total: -1.00 -67.79 372.91 3.81 -63.98 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: 0.96 Total: 20.60 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: 6.59 Total: 14.91 kcal Atomic # 7 Polarization: -117.22 SS G_CDS: -5.70 Total: -122.92 kcal Atomic # 8 Polarization: -22.92 SS G_CDS: -0.06 Total: -22.99 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -67.79 3.81 -63.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087341846.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.291 kcal (2) G-P(sol) polarization free energy of solvation -67.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.984 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds