Wall clock time and date at job start Wed Apr 1 2020 03:55:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30447 * 125.98705 * 2 1 4 4 N 1.39938 * 108.90052 * 179.97438 * 3 2 1 5 5 C 1.46494 * 125.75605 * 180.26603 * 4 3 2 6 6 C 1.34254 * 108.48887 * 359.97438 * 4 3 2 7 7 C 1.38044 * 107.41881 * 0.02562 * 6 4 3 8 8 C 1.47435 * 126.41555 * 180.02562 * 7 6 4 9 9 O 1.21602 * 119.99889 * 204.45150 * 8 7 6 10 10 N 1.34776 * 119.99919 * 24.45186 * 8 7 6 11 11 C 1.49430 * 125.95122 * 185.58936 * 10 8 7 12 12 C 1.48902 * 104.31935 * 175.25624 * 11 10 8 13 13 H 1.08996 * 105.13171 * 285.23416 * 12 11 10 14 14 C 1.56173 * 102.90178 * 32.64342 * 12 11 10 15 15 H 1.09004 * 111.77308 * 69.36132 * 14 12 11 16 16 C 1.49536 * 125.95550 * 5.28116 * 10 8 7 17 17 C 1.53129 * 103.21605 * 188.99752 * 14 12 11 18 18 H 1.09004 * 114.33177 * 154.67920 * 17 14 12 19 19 C 1.54933 * 108.06338 * 26.28488 * 17 14 12 20 20 C 1.54103 * 109.34319 * 285.61940 * 19 17 14 21 21 C 1.49120 * 130.30589 * 159.90255 * 12 11 10 22 22 H 1.09003 * 113.32221 * 26.22517 * 21 12 11 23 23 C 1.55252 * 109.19524 * 257.80935 * 21 12 11 24 24 N 1.46491 * 106.92645 * 291.85662 * 23 21 12 25 25 C 1.36941 * 123.19966 * 214.51327 * 24 23 21 26 26 H 1.07999 * 119.99658 * 154.16337 * 25 24 23 27 27 C 1.38808 * 119.99964 * 334.16483 * 25 24 23 28 28 N 1.31621 * 119.99894 * 354.56237 * 27 25 24 29 29 Si 1.86794 * 120.00030 * 174.56052 * 27 25 24 30 30 H 1.48501 * 109.47015 * 60.00249 * 29 27 25 31 31 H 1.48497 * 109.47063 * 180.02562 * 29 27 25 32 32 H 1.48504 * 109.47191 * 299.99975 * 29 27 25 33 33 H 1.09000 * 109.46882 * 270.04511 * 1 2 3 34 34 H 1.09002 * 109.47608 * 30.05216 * 1 2 3 35 35 H 1.09003 * 109.47230 * 150.05004 * 1 2 3 36 36 H 1.09000 * 109.47423 * 269.69031 * 5 4 3 37 37 H 1.09006 * 109.47043 * 29.69429 * 5 4 3 38 38 H 1.09001 * 109.47297 * 149.68783 * 5 4 3 39 39 H 1.08002 * 126.29117 * 180.02562 * 6 4 3 40 40 H 1.08999 * 110.46604 * 293.96413 * 11 10 8 41 41 H 1.09000 * 110.46438 * 56.42671 * 11 10 8 42 42 H 1.09000 * 110.75551 * 272.65371 * 16 10 8 43 43 H 1.09003 * 110.75314 * 36.02352 * 16 10 8 44 44 H 1.09006 * 109.49017 * 45.57478 * 19 17 14 45 45 H 1.08993 * 109.49589 * 165.65642 * 19 17 14 46 46 H 1.09000 * 110.19295 * 157.25903 * 20 19 17 47 47 H 1.08998 * 110.19061 * 279.16155 * 20 19 17 48 48 H 1.08999 * 110.12070 * 50.59597 * 23 21 12 49 49 H 1.08998 * 110.12211 * 172.19722 * 23 21 12 50 50 H 0.97002 * 120.00039 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6111 0.6444 0.0006 5 6 4.7786 1.5292 0.0063 6 6 3.6439 -0.6978 0.0015 7 6 2.3373 -1.1431 0.0009 8 6 1.8916 -2.5485 0.0021 9 8 0.7944 -2.8388 -0.4344 10 7 2.7004 -3.5115 0.4870 11 6 2.4361 -4.9817 0.4465 12 6 3.6762 -5.5941 0.9981 13 1 4.4159 -5.5044 0.2027 14 6 4.1547 -4.5341 2.0404 15 1 3.4877 -4.4835 2.9010 16 6 4.0214 -3.2953 1.1535 17 6 5.5424 -5.0409 2.4432 18 1 6.2152 -4.2651 2.8088 19 6 6.1108 -5.8720 1.2657 20 6 5.3934 -7.2347 1.2097 21 6 3.9061 -6.9458 1.5844 22 1 3.2104 -7.6999 1.2162 23 6 3.9552 -6.8295 3.1317 24 7 5.1742 -6.0886 3.4653 25 6 5.9207 -6.3387 4.5857 26 1 6.9738 -6.0991 4.5974 27 6 5.3241 -6.9001 5.7062 28 7 4.0224 -7.0933 5.7315 29 14 6.3685 -7.3817 7.1781 30 1 7.0638 -6.1803 7.7059 31 1 5.4985 -7.9553 8.2359 32 1 7.3737 -8.3927 6.7623 33 1 -0.3633 0.0008 1.0277 34 1 -0.3634 0.8895 -0.5146 35 1 -0.3634 -0.8904 -0.5131 36 1 5.0733 1.7485 -1.0199 37 1 4.5281 2.4580 0.5189 38 1 5.6032 1.0394 0.5244 39 1 4.5298 -1.3155 0.0025 40 1 1.5777 -5.2319 1.0699 41 1 2.2700 -5.3109 -0.5793 42 1 4.8239 -3.2563 0.4168 43 1 4.0055 -2.3881 1.7574 44 1 5.9477 -5.3364 0.3304 45 1 7.1791 -6.0293 1.4138 46 1 5.4657 -7.6571 0.2074 47 1 5.8268 -7.9184 1.9396 48 1 3.0870 -6.2791 3.4941 49 1 3.9842 -7.8218 3.5817 50 1 3.6053 -7.4853 6.5147 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087342622.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:33 Heat of formation + Delta-G solvation = 119.882324 kcal Electronic energy + Delta-G solvation = -31652.016855 eV Core-core repulsion = 27683.398703 eV Total energy + Delta-G solvation = -3968.618152 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.62094 -41.03014 -38.59767 -35.97232 -34.10635 -33.25626 -31.43987 -30.93941 -29.85447 -29.68326 -29.41359 -27.71533 -26.12265 -25.49920 -23.75324 -22.00923 -21.72788 -21.28047 -20.42008 -20.21498 -19.17469 -17.46579 -17.09967 -16.68619 -16.21370 -15.94867 -15.72714 -15.16119 -14.85390 -14.59106 -14.46470 -14.19851 -13.92666 -13.64629 -13.44766 -13.22748 -12.93301 -12.73976 -12.56899 -12.36791 -12.30226 -12.14127 -12.09934 -11.57173 -11.33582 -11.10553 -11.06277 -10.95883 -10.92355 -10.79233 -10.62963 -10.50179 -10.25588 -10.15144 -9.66150 -9.65159 -9.46716 -9.25418 -9.01668 -8.77821 -8.51230 -8.41629 -6.67794 -5.78749 -3.21052 1.42799 2.11767 2.17234 3.05968 3.35869 3.41384 3.42260 3.46488 4.17886 4.40336 4.45930 4.58221 4.74502 4.80183 4.87985 4.97109 5.06404 5.12265 5.16942 5.35773 5.39907 5.41241 5.50173 5.55239 5.60694 5.64046 5.72470 5.81340 5.83473 5.87622 5.93273 5.94567 6.05990 6.10343 6.21777 6.27790 6.34131 6.42351 6.47086 6.48738 6.63992 6.68740 6.74405 6.91551 6.98725 7.09473 7.41466 7.45423 7.64217 7.72292 7.77694 8.30947 8.39709 9.17816 9.75048 10.43515 11.30688 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014269 B = 0.003087 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.875524 B = 9067.122051 C = 9563.438989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.130 3.870 3 N -0.305 5.305 4 N -0.365 5.365 5 C 0.097 3.903 6 C 0.098 3.902 7 C -0.280 4.280 8 C 0.609 3.391 9 O -0.548 6.548 10 N -0.620 5.620 11 C 0.138 3.862 12 C -0.125 4.125 13 H 0.068 0.932 14 C -0.117 4.117 15 H 0.100 0.900 16 C 0.108 3.892 17 C 0.170 3.830 18 H 0.081 0.919 19 C -0.128 4.128 20 C -0.097 4.097 21 C -0.099 4.099 22 H 0.077 0.923 23 C 0.192 3.808 24 N -0.595 5.595 25 C -0.243 4.243 26 H 0.066 0.934 27 C 0.004 3.996 28 N -0.909 5.909 29 Si 0.905 3.095 30 H -0.284 1.284 31 H -0.291 1.291 32 H -0.285 1.285 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.078 0.922 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.185 0.815 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.074 0.926 44 H 0.048 0.952 45 H 0.051 0.949 46 H 0.041 0.959 47 H 0.073 0.927 48 H 0.025 0.975 49 H 0.069 0.931 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.728 11.740 -13.014 17.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.037 4.037 3 N -0.127 5.127 4 N -0.143 5.143 5 C -0.044 4.044 6 C -0.053 4.053 7 C -0.295 4.295 8 C 0.399 3.601 9 O -0.427 6.427 10 N -0.354 5.354 11 C 0.017 3.983 12 C -0.144 4.144 13 H 0.086 0.914 14 C -0.137 4.137 15 H 0.118 0.882 16 C -0.015 4.015 17 C 0.063 3.937 18 H 0.099 0.901 19 C -0.167 4.167 20 C -0.135 4.135 21 C -0.119 4.119 22 H 0.095 0.905 23 C 0.067 3.933 24 N -0.319 5.319 25 C -0.373 4.373 26 H 0.084 0.916 27 C -0.195 4.195 28 N -0.554 5.554 29 Si 0.735 3.265 30 H -0.210 1.210 31 H -0.217 1.217 32 H -0.211 1.211 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.116 0.884 36 H 0.096 0.904 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.202 0.798 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.093 0.907 44 H 0.066 0.934 45 H 0.070 0.930 46 H 0.060 0.940 47 H 0.091 0.909 48 H 0.043 0.957 49 H 0.087 0.913 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 1.205 12.955 -13.079 18.448 hybrid contribution 0.842 -1.050 0.895 1.616 sum 2.047 11.905 -12.184 17.157 Atomic orbital electron populations 1.20373 0.85802 1.04318 1.03474 1.22429 0.97186 0.88722 0.95399 1.77151 0.86020 1.22663 1.26860 1.48272 1.06078 1.04784 1.55171 1.21979 0.83875 0.94766 1.03734 1.23332 0.99231 0.85035 0.97672 1.20189 0.92170 0.94364 1.22791 1.16862 0.83396 0.82912 0.76973 1.90717 1.20659 1.82655 1.48653 1.49573 1.20646 1.06532 1.58626 1.20821 0.98374 0.78586 1.00508 1.21281 0.96753 0.97169 0.99211 0.91419 1.23295 1.00650 0.92209 0.97567 0.88224 1.22358 0.84297 0.99799 0.95053 1.21794 0.91717 0.90603 0.89580 0.90130 1.22694 0.99416 0.96780 0.97854 1.22276 0.95083 0.97106 0.99003 1.21868 0.96192 0.93535 1.00334 0.90491 1.21053 0.88647 0.97096 0.86522 1.45126 1.28233 1.35718 1.22793 1.19014 0.90964 1.37703 0.89576 0.91619 1.25088 0.95412 1.01764 0.97189 1.69935 1.08140 1.47876 1.29416 0.86338 0.79277 0.78317 0.82578 1.21050 1.21670 1.21128 0.90346 0.90976 0.88377 0.90370 0.88897 0.88946 0.79811 0.91426 0.91427 0.91564 0.90745 0.93409 0.93005 0.93992 0.90857 0.95659 0.91301 0.93572 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 10.18 36.00 0.37 -0.61 16 2 C 0.13 1.82 7.26 -82.02 -0.60 1.23 16 3 N -0.30 -4.11 12.50 33.89 0.42 -3.69 16 4 N -0.36 -3.92 3.98 -67.60 -0.27 -4.19 16 5 C 0.10 0.56 11.44 59.84 0.68 1.25 16 6 C 0.10 1.09 9.68 -16.56 -0.16 0.93 16 7 C -0.28 -3.96 5.81 -105.06 -0.61 -4.57 16 8 C 0.61 9.81 7.77 -12.52 -0.10 9.71 16 9 O -0.55 -10.25 15.54 5.28 0.08 -10.17 16 10 N -0.62 -9.25 3.42 -172.39 -0.59 -9.84 16 11 C 0.14 2.10 6.84 -4.42 -0.03 2.07 16 12 C -0.13 -1.93 2.31 -92.83 -0.21 -2.14 16 13 H 0.07 0.98 4.43 -51.93 -0.23 0.75 16 14 C -0.12 -1.91 2.53 -88.88 -0.22 -2.14 16 15 H 0.10 2.02 6.73 -51.93 -0.35 1.67 16 16 C 0.11 1.40 4.77 -2.38 -0.01 1.39 16 17 C 0.17 3.01 4.52 -64.35 -0.29 2.72 16 18 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 19 C -0.13 -2.00 5.55 -25.14 -0.14 -2.14 16 20 C -0.10 -1.60 5.62 -24.51 -0.14 -1.74 16 21 C -0.10 -1.70 4.34 -89.69 -0.39 -2.09 16 22 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 23 C 0.19 4.25 3.81 -2.85 -0.01 4.24 16 24 N -0.59 -13.47 2.19 -159.62 -0.35 -13.82 16 25 C -0.24 -6.25 10.02 -15.06 -0.15 -6.40 16 26 H 0.07 1.66 7.83 -52.49 -0.41 1.24 16 27 C 0.00 0.10 5.29 -17.43 -0.09 0.01 16 28 N -0.91 -25.45 10.93 55.49 0.61 -24.85 16 29 Si 0.90 21.12 29.56 -169.99 -5.02 16.09 16 30 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 31 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 32 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 33 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.10 1.30 6.44 -51.93 -0.33 0.96 16 36 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.19 1.49 5.98 -52.49 -0.31 1.18 16 40 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.07 0.71 7.29 -51.93 -0.38 0.33 16 43 H 0.07 0.93 6.91 -51.93 -0.36 0.57 16 44 H 0.05 0.64 6.26 -51.93 -0.32 0.32 16 45 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 46 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.07 1.41 7.62 -51.93 -0.40 1.01 16 48 H 0.03 0.63 6.97 -51.93 -0.36 0.27 16 49 H 0.07 1.74 6.99 -51.93 -0.36 1.38 16 50 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 378.49 15.07 5.70 5.70 Total: -1.00 -32.18 378.49 -9.13 -41.31 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -7.61 Total: 1.73 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: -2.10 Total: 1.71 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: -0.18 Total: -56.38 kcal Atomic # 8 Polarization: -10.25 SS G_CDS: 0.08 Total: -10.17 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.18 -9.13 -41.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087342622.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.191 kcal (2) G-P(sol) polarization free energy of solvation -32.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.309 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds