Wall clock time and date at job start Wed Apr 1 2020 03:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30447 * 125.98705 * 2 1 4 4 N 1.39938 * 108.90052 * 179.97438 * 3 2 1 5 5 C 1.46494 * 125.75605 * 180.26603 * 4 3 2 6 6 C 1.34254 * 108.48887 * 359.97438 * 4 3 2 7 7 C 1.38044 * 107.41881 * 0.02562 * 6 4 3 8 8 C 1.47435 * 126.41555 * 180.02562 * 7 6 4 9 9 O 1.21602 * 119.99889 * 204.45150 * 8 7 6 10 10 N 1.34776 * 119.99919 * 24.45186 * 8 7 6 11 11 C 1.49430 * 125.95122 * 185.58936 * 10 8 7 12 12 C 1.48902 * 104.31935 * 175.25624 * 11 10 8 13 13 H 1.08996 * 105.13171 * 285.23416 * 12 11 10 14 14 C 1.56173 * 102.90178 * 32.64342 * 12 11 10 15 15 H 1.09004 * 111.77308 * 69.36132 * 14 12 11 16 16 C 1.49536 * 125.95550 * 5.28116 * 10 8 7 17 17 C 1.53129 * 103.21605 * 188.99752 * 14 12 11 18 18 H 1.09004 * 114.33177 * 154.67920 * 17 14 12 19 19 C 1.54933 * 108.06338 * 26.28488 * 17 14 12 20 20 C 1.54103 * 109.34319 * 285.61940 * 19 17 14 21 21 C 1.49120 * 130.30589 * 159.90255 * 12 11 10 22 22 H 1.09003 * 113.32221 * 26.22517 * 21 12 11 23 23 C 1.55252 * 109.19524 * 257.80935 * 21 12 11 24 24 N 1.46491 * 106.92645 * 291.85662 * 23 21 12 25 25 C 1.36941 * 123.19966 * 214.51327 * 24 23 21 26 26 H 1.07999 * 119.99658 * 154.16337 * 25 24 23 27 27 C 1.38808 * 119.99964 * 334.16483 * 25 24 23 28 28 N 1.31621 * 119.99894 * 354.56237 * 27 25 24 29 29 Si 1.86794 * 120.00030 * 174.56052 * 27 25 24 30 30 H 1.48501 * 109.47015 * 60.00249 * 29 27 25 31 31 H 1.48497 * 109.47063 * 180.02562 * 29 27 25 32 32 H 1.48504 * 109.47191 * 299.99975 * 29 27 25 33 33 H 1.09000 * 109.46882 * 270.04511 * 1 2 3 34 34 H 1.09002 * 109.47608 * 30.05216 * 1 2 3 35 35 H 1.09003 * 109.47230 * 150.05004 * 1 2 3 36 36 H 1.09000 * 109.47423 * 269.69031 * 5 4 3 37 37 H 1.09006 * 109.47043 * 29.69429 * 5 4 3 38 38 H 1.09001 * 109.47297 * 149.68783 * 5 4 3 39 39 H 1.08002 * 126.29117 * 180.02562 * 6 4 3 40 40 H 1.08999 * 110.46604 * 293.96413 * 11 10 8 41 41 H 1.09000 * 110.46438 * 56.42671 * 11 10 8 42 42 H 1.09000 * 110.75551 * 272.65371 * 16 10 8 43 43 H 1.09003 * 110.75314 * 36.02352 * 16 10 8 44 44 H 1.09006 * 109.49017 * 45.57478 * 19 17 14 45 45 H 1.08993 * 109.49589 * 165.65642 * 19 17 14 46 46 H 1.09000 * 110.19295 * 157.25903 * 20 19 17 47 47 H 1.08998 * 110.19061 * 279.16155 * 20 19 17 48 48 H 1.08999 * 110.12070 * 50.59597 * 23 21 12 49 49 H 1.08998 * 110.12211 * 172.19722 * 23 21 12 50 50 H 0.97002 * 120.00039 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6111 0.6444 0.0006 5 6 4.7786 1.5292 0.0063 6 6 3.6439 -0.6978 0.0015 7 6 2.3373 -1.1431 0.0009 8 6 1.8916 -2.5485 0.0021 9 8 0.7944 -2.8388 -0.4344 10 7 2.7004 -3.5115 0.4870 11 6 2.4361 -4.9817 0.4465 12 6 3.6762 -5.5941 0.9981 13 1 4.4159 -5.5044 0.2027 14 6 4.1547 -4.5341 2.0404 15 1 3.4877 -4.4835 2.9010 16 6 4.0214 -3.2953 1.1535 17 6 5.5424 -5.0409 2.4432 18 1 6.2152 -4.2651 2.8088 19 6 6.1108 -5.8720 1.2657 20 6 5.3934 -7.2347 1.2097 21 6 3.9061 -6.9458 1.5844 22 1 3.2104 -7.6999 1.2162 23 6 3.9552 -6.8295 3.1317 24 7 5.1742 -6.0886 3.4653 25 6 5.9207 -6.3387 4.5857 26 1 6.9738 -6.0991 4.5974 27 6 5.3241 -6.9001 5.7062 28 7 4.0224 -7.0933 5.7315 29 14 6.3685 -7.3817 7.1781 30 1 7.0638 -6.1803 7.7059 31 1 5.4985 -7.9553 8.2359 32 1 7.3737 -8.3927 6.7623 33 1 -0.3633 0.0008 1.0277 34 1 -0.3634 0.8895 -0.5146 35 1 -0.3634 -0.8904 -0.5131 36 1 5.0733 1.7485 -1.0199 37 1 4.5281 2.4580 0.5189 38 1 5.6032 1.0394 0.5244 39 1 4.5298 -1.3155 0.0025 40 1 1.5777 -5.2319 1.0699 41 1 2.2700 -5.3109 -0.5793 42 1 4.8239 -3.2563 0.4168 43 1 4.0055 -2.3881 1.7574 44 1 5.9477 -5.3364 0.3304 45 1 7.1791 -6.0293 1.4138 46 1 5.4657 -7.6571 0.2074 47 1 5.8268 -7.9184 1.9396 48 1 3.0870 -6.2791 3.4941 49 1 3.9842 -7.8218 3.5817 50 1 3.6053 -7.4853 6.5147 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087342622.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:32 Heat of formation + Delta-G solvation = 100.232964 kcal Electronic energy + Delta-G solvation = -31652.868915 eV Core-core repulsion = 27683.398703 eV Total energy + Delta-G solvation = -3969.470212 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.70345 -42.21427 -39.83781 -37.32947 -35.04166 -34.90274 -32.75919 -32.22205 -31.52740 -30.74697 -30.32698 -29.04822 -27.31021 -26.79737 -25.06368 -23.40210 -23.05052 -22.59727 -21.72354 -21.25546 -20.19529 -19.07597 -18.20529 -18.13635 -17.35358 -17.04892 -16.85468 -16.64977 -16.04777 -15.95735 -15.82062 -15.70257 -15.02586 -14.56754 -14.45274 -14.30243 -14.20697 -14.05908 -13.73927 -13.63387 -13.34420 -13.08886 -13.03915 -12.98135 -12.86357 -12.67096 -12.59084 -12.39707 -12.32557 -12.18400 -12.11014 -12.01117 -11.89578 -11.80461 -11.18595 -10.90248 -10.65465 -10.53378 -10.39427 -10.34968 -9.80919 -9.50727 -8.56606 -7.79329 -5.22447 0.55221 1.08665 1.44752 1.47808 1.49021 1.55329 1.91559 2.35435 2.52366 3.29086 3.35081 3.38360 3.52937 3.65961 3.70266 3.94651 4.07814 4.15760 4.21690 4.29263 4.35941 4.40604 4.43746 4.45480 4.48492 4.52038 4.55442 4.68203 4.71317 4.73424 4.74811 4.83851 4.90921 4.94187 4.94317 4.98252 5.04344 5.10491 5.22484 5.32992 5.39246 5.46261 5.49399 5.56379 5.62529 5.73054 5.76039 5.88371 5.91229 6.36173 6.49212 6.60725 7.19764 7.21475 7.86259 8.50725 9.27749 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.014269 B = 0.003087 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.875524 B = 9067.122051 C = 9563.438989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.112 3.888 3 N -0.327 5.327 4 N -0.359 5.359 5 C 0.085 3.915 6 C 0.120 3.880 7 C -0.315 4.315 8 C 0.607 3.393 9 O -0.586 6.586 10 N -0.620 5.620 11 C 0.139 3.861 12 C -0.117 4.117 13 H 0.098 0.902 14 C -0.112 4.112 15 H 0.049 0.951 16 C 0.118 3.882 17 C 0.167 3.833 18 H 0.091 0.909 19 C -0.120 4.120 20 C -0.093 4.093 21 C -0.092 4.092 22 H 0.088 0.912 23 C 0.205 3.795 24 N -0.612 5.612 25 C -0.241 4.241 26 H 0.073 0.927 27 C -0.057 4.057 28 N -0.944 5.944 29 Si 0.964 3.036 30 H -0.276 1.276 31 H -0.302 1.302 32 H -0.279 1.279 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.123 0.877 39 H 0.221 0.779 40 H 0.041 0.959 41 H 0.083 0.917 42 H 0.112 0.888 43 H 0.083 0.917 44 H 0.089 0.911 45 H 0.057 0.943 46 H 0.077 0.923 47 H 0.038 0.962 48 H -0.017 1.017 49 H 0.025 0.975 50 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.048 13.507 -15.587 21.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.055 4.055 3 N -0.150 5.150 4 N -0.136 5.136 5 C -0.054 4.054 6 C -0.033 4.033 7 C -0.330 4.330 8 C 0.398 3.602 9 O -0.468 6.468 10 N -0.353 5.353 11 C 0.018 3.982 12 C -0.135 4.135 13 H 0.116 0.884 14 C -0.132 4.132 15 H 0.067 0.933 16 C -0.004 4.004 17 C 0.063 3.937 18 H 0.109 0.891 19 C -0.158 4.158 20 C -0.131 4.131 21 C -0.112 4.112 22 H 0.106 0.894 23 C 0.079 3.921 24 N -0.337 5.337 25 C -0.371 4.371 26 H 0.091 0.909 27 C -0.251 4.251 28 N -0.592 5.592 29 Si 0.793 3.207 30 H -0.202 1.202 31 H -0.229 1.229 32 H -0.205 1.205 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.100 0.900 36 H 0.115 0.885 37 H 0.113 0.887 38 H 0.142 0.858 39 H 0.238 0.762 40 H 0.060 0.940 41 H 0.101 0.899 42 H 0.130 0.870 43 H 0.102 0.898 44 H 0.107 0.893 45 H 0.076 0.924 46 H 0.095 0.905 47 H 0.057 0.943 48 H 0.001 0.999 49 H 0.043 0.957 50 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 4.580 14.770 -15.674 22.018 hybrid contribution -0.148 -1.539 1.702 2.300 sum 4.433 13.231 -13.971 19.746 Atomic orbital electron populations 1.20330 0.85611 1.04184 1.03571 1.22658 0.97875 0.89136 0.95832 1.77095 0.87526 1.22808 1.27559 1.48707 1.06179 1.05445 1.53256 1.22449 0.82831 0.94586 1.05526 1.23742 0.99025 0.85370 0.95144 1.20147 0.93826 0.93138 1.25873 1.17181 0.82890 0.83782 0.76348 1.90691 1.22270 1.83325 1.50469 1.49571 1.21339 1.06046 1.58387 1.20778 0.97375 0.79255 1.00814 1.21119 0.97548 0.95425 0.99416 0.88446 1.22982 0.98772 0.94847 0.96644 0.93292 1.22444 0.84491 0.98094 0.95352 1.22085 0.92593 0.90077 0.88981 0.89112 1.22589 0.99240 0.95792 0.98190 1.22235 0.93588 0.97423 0.99817 1.21737 0.97831 0.95518 0.96108 0.89387 1.20668 0.87359 0.93999 0.90062 1.45382 1.27649 1.37628 1.23046 1.19408 0.91587 1.35871 0.90282 0.90922 1.25799 0.96294 1.03083 0.99924 1.70149 1.09771 1.49775 1.29476 0.85384 0.77693 0.78141 0.79473 1.20179 1.22890 1.20461 0.90144 0.89462 0.90045 0.88504 0.88655 0.85838 0.76224 0.94043 0.89882 0.86996 0.89835 0.89296 0.92447 0.90496 0.94339 0.99908 0.95686 0.94722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.92 10.18 71.23 0.72 -1.20 16 2 C 0.11 3.05 7.26 43.51 0.32 3.37 16 3 N -0.33 -8.26 12.50 -46.68 -0.58 -8.85 16 4 N -0.36 -6.47 3.98 -367.79 -1.46 -7.93 16 5 C 0.08 0.62 11.44 127.77 1.46 2.08 16 6 C 0.12 2.18 9.68 84.28 0.82 2.99 16 7 C -0.31 -8.35 5.81 -20.15 -0.12 -8.46 16 8 C 0.61 18.96 7.77 86.67 0.67 19.63 16 9 O -0.59 -22.22 15.54 -4.04 -0.06 -22.28 16 10 N -0.62 -17.26 3.42 -817.59 -2.80 -20.06 16 11 C 0.14 4.07 6.84 84.51 0.58 4.64 16 12 C -0.12 -3.32 2.31 -12.23 -0.03 -3.35 16 13 H 0.10 2.28 4.43 -2.39 -0.01 2.26 16 14 C -0.11 -3.49 2.53 -9.67 -0.02 -3.51 16 15 H 0.05 2.05 6.73 -2.38 -0.02 2.04 16 16 C 0.12 2.61 4.77 85.77 0.41 3.02 16 17 C 0.17 5.55 4.52 44.83 0.20 5.75 16 18 H 0.09 2.83 8.14 -2.38 -0.02 2.81 16 19 C -0.12 -3.19 5.55 31.63 0.18 -3.01 16 20 C -0.09 -2.82 5.62 32.03 0.18 -2.64 16 21 C -0.09 -3.10 4.34 -10.19 -0.04 -3.15 16 22 H 0.09 2.77 8.14 -2.39 -0.02 2.75 16 23 C 0.20 9.56 3.81 87.15 0.33 9.89 16 24 N -0.61 -28.15 2.19 -658.92 -1.44 -29.59 16 25 C -0.24 -12.58 10.02 84.03 0.84 -11.74 16 26 H 0.07 3.62 7.83 -2.91 -0.02 3.59 16 27 C -0.06 -3.12 5.29 84.86 0.45 -2.67 16 28 N -0.94 -56.13 10.93 21.65 0.24 -55.89 16 29 Si 0.96 44.55 29.56 68.60 2.03 46.58 16 30 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 31 H -0.30 -14.40 7.11 99.48 0.71 -13.69 16 32 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 33 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.08 2.26 6.44 -2.39 -0.02 2.24 16 36 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.09 0.69 8.14 -2.38 -0.02 0.67 16 38 H 0.12 0.17 8.14 -2.39 -0.02 0.15 16 39 H 0.22 2.16 5.98 -2.91 -0.02 2.15 16 40 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 42 H 0.11 1.57 7.29 -2.39 -0.02 1.55 16 43 H 0.08 1.76 6.91 -2.39 -0.02 1.74 16 44 H 0.09 1.72 6.26 -2.38 -0.01 1.71 16 45 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 47 H 0.04 1.44 7.62 -2.39 -0.02 1.42 16 48 H -0.02 -0.92 6.97 -2.39 -0.02 -0.93 16 49 H 0.02 1.35 6.99 -2.39 -0.02 1.33 16 50 H 0.24 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -77.16 378.49 3.81 -73.35 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 0.95 Total: 13.02 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: 6.95 Total: 11.65 kcal Atomic # 7 Polarization: -116.27 SS G_CDS: -6.05 Total: -122.32 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.06 Total: -22.28 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -77.16 3.81 -73.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087342622.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.581 kcal (2) G-P(sol) polarization free energy of solvation -77.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds