Wall clock time and date at job start Wed Apr 1 2020 03:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30443 * 125.98880 * 2 1 4 4 N 1.39937 * 108.89930 * 180.25876 * 3 2 1 5 5 C 1.46496 * 125.75757 * 179.77526 * 4 3 2 6 6 C 1.34266 * 108.48751 * 359.75209 * 4 3 2 7 7 C 1.38042 * 107.41972 * 0.02562 * 6 4 3 8 8 C 1.47425 * 126.41683 * 179.97438 * 7 6 4 9 9 O 1.21601 * 119.99838 * 195.89856 * 8 7 6 10 10 N 1.34775 * 119.99809 * 15.88835 * 8 7 6 11 11 C 1.48150 * 127.84012 * 10.00019 * 10 8 7 12 12 C 1.54383 * 104.61162 * 219.54189 * 11 10 8 13 13 H 1.09004 * 111.26822 * 216.26350 * 12 11 10 14 14 C 1.54166 * 104.99656 * 336.19051 * 12 11 10 15 15 H 1.08993 * 111.00003 * 239.28656 * 14 12 11 16 16 C 1.48152 * 127.83511 * 190.00587 * 10 8 7 17 17 C 1.53278 * 109.34358 * 116.56560 * 14 12 11 18 18 H 1.08997 * 110.92670 * 182.14345 * 17 14 12 19 19 C 1.53324 * 108.74847 * 60.43914 * 17 14 12 20 20 C 1.52929 * 109.58833 * 299.32495 * 19 17 14 21 21 C 1.52987 * 109.08165 * 93.79019 * 12 11 10 22 22 H 1.08995 * 110.13210 * 65.76501 * 21 12 11 23 23 C 1.53597 * 109.29260 * 305.26372 * 21 12 11 24 24 N 1.47639 * 106.74418 * 300.53021 * 23 21 12 25 25 C 1.36935 * 122.07083 * 179.97438 * 24 23 21 26 26 H 1.08005 * 120.00275 * 175.34261 * 25 24 23 27 27 C 1.38810 * 120.00251 * 355.34180 * 25 24 23 28 28 N 1.31620 * 120.00465 * 213.30420 * 27 25 24 29 29 Si 1.86797 * 119.99748 * 33.29683 * 27 25 24 30 30 H 1.48505 * 109.47295 * 174.02706 * 29 27 25 31 31 H 1.48507 * 109.47211 * 54.03000 * 29 27 25 32 32 H 1.48504 * 109.47673 * 294.03143 * 29 27 25 33 33 H 1.09004 * 109.47151 * 270.14184 * 1 2 3 34 34 H 1.09000 * 109.46984 * 30.14559 * 1 2 3 35 35 H 1.09003 * 109.46837 * 150.14777 * 1 2 3 36 36 H 1.09003 * 109.46870 * 269.97501 * 5 4 3 37 37 H 1.08998 * 109.47192 * 29.97010 * 5 4 3 38 38 H 1.09000 * 109.47113 * 149.97428 * 5 4 3 39 39 H 1.07995 * 126.28590 * 180.02562 * 6 4 3 40 40 H 1.08997 * 110.40606 * 100.75898 * 11 10 8 41 41 H 1.09000 * 110.40762 * 338.32376 * 11 10 8 42 42 H 1.09002 * 110.41730 * 21.64161 * 16 10 8 43 43 H 1.09006 * 110.40636 * 259.20295 * 16 10 8 44 44 H 1.08997 * 109.45111 * 59.36395 * 19 17 14 45 45 H 1.08997 * 109.44564 * 179.31661 * 19 17 14 46 46 H 1.09004 * 109.38224 * 120.87024 * 20 19 17 47 47 H 1.09005 * 109.38462 * 240.54360 * 20 19 17 48 48 H 1.08998 * 110.12484 * 181.15039 * 23 21 12 49 49 H 1.09003 * 109.86860 * 59.76369 * 23 21 12 50 50 H 0.97004 * 119.99958 * 4.99380 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6111 0.6442 -0.0060 5 6 4.7787 1.5290 -0.0126 6 6 3.6439 -0.6980 -0.0042 7 6 2.3373 -1.1433 0.0024 8 6 1.8915 -2.5485 0.0059 9 8 0.7410 -2.8221 -0.2770 10 7 2.7594 -3.5299 0.3224 11 6 4.1230 -3.3909 0.8846 12 6 4.9564 -4.4667 0.1555 13 1 5.6970 -4.9111 0.8205 14 6 3.9308 -5.5216 -0.3049 15 1 4.1582 -6.4991 0.1203 16 6 2.5661 -4.9925 0.1871 17 6 3.9157 -5.5804 -1.8365 18 1 3.1709 -6.2927 -2.1914 19 6 5.3132 -5.9753 -2.3283 20 6 6.3312 -4.9281 -1.8748 21 6 5.6319 -3.8351 -1.0632 22 1 6.3624 -3.0919 -0.7440 23 6 4.5663 -3.1664 -1.9444 24 7 3.6189 -4.2258 -2.3440 25 6 2.5353 -3.9693 -3.1411 26 1 1.9062 -4.7812 -3.4749 27 6 2.2455 -2.6657 -3.5201 28 7 0.9944 -2.2899 -3.6812 29 14 3.6310 -1.4449 -3.8013 30 1 3.0725 -0.1762 -4.3340 31 1 4.5972 -2.0089 -4.7780 32 1 4.3252 -1.1790 -2.5157 33 1 -0.3634 0.0025 1.0277 34 1 -0.3633 0.8887 -0.5161 35 1 -0.3633 -0.8913 -0.5116 36 1 5.0636 1.7469 -1.0419 37 1 4.5331 2.4585 0.5010 38 1 5.6081 1.0398 0.4982 39 1 4.5298 -1.3157 -0.0072 40 1 4.1128 -3.5807 1.9579 41 1 4.5201 -2.3972 0.6772 42 1 1.7884 -5.2071 -0.5460 43 1 2.3127 -5.4333 1.1513 44 1 5.5827 -6.9468 -1.9141 45 1 5.3121 -6.0324 -3.4168 46 1 7.0917 -5.4064 -1.2575 47 1 6.8053 -4.4820 -2.7491 48 1 5.0310 -2.7290 -2.8281 49 1 4.0457 -2.3959 -1.3757 50 1 0.2727 -2.9011 -3.4655 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087342623.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:37 Heat of formation + Delta-G solvation = 120.218428 kcal Electronic energy + Delta-G solvation = -34528.975452 eV Core-core repulsion = 30560.371875 eV Total energy + Delta-G solvation = -3968.603577 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.31245 -40.44964 -37.77203 -35.36289 -33.57460 -33.27758 -32.21949 -30.84964 -30.35630 -29.52418 -28.94523 -27.11930 -25.76756 -24.88692 -24.06010 -22.42217 -21.59027 -20.89080 -20.77912 -19.84520 -18.72385 -17.48431 -16.95741 -16.47020 -16.00877 -15.83939 -15.42721 -15.14354 -14.92540 -14.61770 -14.02038 -13.64975 -13.56782 -13.22104 -13.09905 -12.86186 -12.75435 -12.34840 -12.30895 -12.29537 -11.99910 -11.94143 -11.81615 -11.67123 -11.53251 -11.31007 -11.27576 -11.17082 -10.76987 -10.66884 -10.42935 -10.22937 -9.99031 -9.77477 -9.58168 -9.37134 -8.99127 -8.85982 -8.75194 -8.18199 -8.05644 -7.82744 -6.87537 -6.09592 -2.85859 1.96832 2.66037 2.76084 3.40910 3.58223 3.71707 3.78749 4.20518 4.61582 4.65438 4.78762 4.81829 4.88559 5.01251 5.06963 5.14732 5.26187 5.39583 5.42879 5.49746 5.51344 5.54108 5.60893 5.66267 5.68228 5.70892 5.75798 5.83802 5.95880 5.99577 6.12141 6.13467 6.14943 6.18056 6.26754 6.35492 6.39626 6.42481 6.49162 6.57869 6.60948 6.62584 6.80823 6.81749 6.91754 7.05787 7.10350 7.19074 8.00940 8.01278 8.40732 8.59631 9.17388 9.28154 9.85746 10.41934 11.36876 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011599 B = 0.006617 C = 0.006383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.488392 B = 4230.770177 C = 4385.652610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.137 3.863 3 N -0.309 5.309 4 N -0.370 5.370 5 C 0.100 3.900 6 C 0.080 3.920 7 C -0.258 4.258 8 C 0.632 3.368 9 O -0.520 6.520 10 N -0.606 5.606 11 C 0.091 3.909 12 C -0.085 4.085 13 H 0.079 0.921 14 C -0.113 4.113 15 H 0.077 0.923 16 C 0.134 3.866 17 C 0.181 3.819 18 H 0.071 0.929 19 C -0.134 4.134 20 C -0.102 4.102 21 C -0.099 4.099 22 H 0.065 0.935 23 C 0.130 3.870 24 N -0.588 5.588 25 C -0.345 4.345 26 H 0.072 0.928 27 C 0.006 3.994 28 N -0.889 5.889 29 Si 1.025 2.975 30 H -0.309 1.309 31 H -0.308 1.308 32 H -0.284 1.284 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.104 0.896 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.189 0.811 40 H 0.063 0.937 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.049 0.951 44 H 0.051 0.949 45 H 0.059 0.941 46 H 0.052 0.948 47 H 0.054 0.946 48 H 0.015 0.985 49 H 0.059 0.941 50 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.581 -0.620 12.097 16.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.030 4.030 3 N -0.132 5.132 4 N -0.149 5.149 5 C -0.041 4.041 6 C -0.069 4.069 7 C -0.273 4.273 8 C 0.422 3.578 9 O -0.395 6.395 10 N -0.340 5.340 11 C -0.033 4.033 12 C -0.105 4.105 13 H 0.097 0.903 14 C -0.134 4.134 15 H 0.095 0.905 16 C 0.011 3.989 17 C 0.072 3.928 18 H 0.090 0.910 19 C -0.173 4.173 20 C -0.140 4.140 21 C -0.118 4.118 22 H 0.083 0.917 23 C 0.006 3.994 24 N -0.312 5.312 25 C -0.472 4.472 26 H 0.090 0.910 27 C -0.198 4.198 28 N -0.527 5.527 29 Si 0.861 3.139 30 H -0.238 1.238 31 H -0.238 1.238 32 H -0.212 1.212 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.123 0.877 36 H 0.094 0.906 37 H 0.108 0.892 38 H 0.104 0.896 39 H 0.205 0.795 40 H 0.081 0.919 41 H 0.095 0.905 42 H 0.105 0.895 43 H 0.067 0.933 44 H 0.069 0.931 45 H 0.078 0.922 46 H 0.071 0.929 47 H 0.073 0.927 48 H 0.032 0.968 49 H 0.076 0.924 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 11.262 2.288 11.368 16.165 hybrid contribution 0.468 -2.356 0.058 2.402 sum 11.730 -0.067 11.427 16.376 Atomic orbital electron populations 1.20342 0.85961 1.04925 1.02323 1.22359 0.97113 0.88760 0.94781 1.77059 0.85900 1.22774 1.27444 1.48181 1.05939 1.04645 1.56136 1.21868 0.84080 0.94545 1.03608 1.23672 0.99481 0.84866 0.98854 1.20212 0.91645 0.94769 1.20647 1.16395 0.83965 0.82184 0.75262 1.90704 1.17904 1.82864 1.48003 1.48269 1.14963 1.06186 1.64582 1.22769 0.84010 0.99697 0.96795 1.22000 0.96704 0.95739 0.96009 0.90273 1.22753 0.94319 0.97155 0.99183 0.90452 1.21974 0.97784 0.79851 0.99253 1.20591 0.93719 0.88336 0.90117 0.91045 1.22103 0.97237 0.97014 1.00961 1.21354 0.97236 0.96451 0.98933 1.21519 0.97317 0.97281 0.95661 0.91688 1.22041 0.89987 0.92437 0.94953 1.44682 1.27840 1.01433 1.57229 1.19944 1.02455 0.94641 1.30127 0.90994 1.25126 0.99987 0.94822 0.99891 1.70797 0.98716 1.35444 1.47722 0.84676 0.76564 0.76732 0.75973 1.23807 1.23768 1.21164 0.91191 0.91309 0.87742 0.90635 0.89152 0.89590 0.79521 0.91857 0.90468 0.89474 0.93300 0.93077 0.92228 0.92945 0.92710 0.96766 0.92383 0.92251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.46 10.09 36.01 0.36 -1.10 16 2 C 0.14 2.85 7.26 -82.02 -0.60 2.26 16 3 N -0.31 -6.06 12.50 33.90 0.42 -5.64 16 4 N -0.37 -6.21 3.98 -67.60 -0.27 -6.48 16 5 C 0.10 1.09 11.44 59.84 0.68 1.77 16 6 C 0.08 1.42 7.72 -16.56 -0.13 1.29 16 7 C -0.26 -5.39 5.71 -105.07 -0.60 -5.99 16 8 C 0.63 14.06 7.19 -12.52 -0.09 13.97 16 9 O -0.52 -13.40 15.33 5.28 0.08 -13.32 16 10 N -0.61 -11.34 1.98 -170.55 -0.34 -11.68 16 11 C 0.09 1.30 5.66 -2.41 -0.01 1.29 16 12 C -0.09 -1.16 3.17 -89.29 -0.28 -1.44 16 13 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 14 C -0.11 -1.71 3.21 -89.12 -0.29 -2.00 16 15 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 16 C 0.13 2.36 6.13 -2.39 -0.01 2.34 16 17 C 0.18 3.32 2.88 -66.98 -0.19 3.13 16 18 H 0.07 1.39 8.00 -51.93 -0.42 0.97 16 19 C -0.13 -2.11 5.85 -26.60 -0.16 -2.27 16 20 C -0.10 -1.48 5.65 -26.75 -0.15 -1.63 16 21 C -0.10 -1.52 2.71 -90.30 -0.24 -1.76 16 22 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 23 C 0.13 2.67 2.74 -3.11 -0.01 2.66 16 24 N -0.59 -13.24 2.01 -163.15 -0.33 -13.57 16 25 C -0.34 -9.53 10.13 -15.06 -0.15 -9.69 16 26 H 0.07 2.16 8.03 -52.48 -0.42 1.74 16 27 C 0.01 0.17 5.40 -17.43 -0.09 0.07 16 28 N -0.89 -28.08 13.70 55.49 0.76 -27.32 16 29 Si 1.02 27.06 24.78 -169.99 -4.21 22.84 16 30 H -0.31 -8.79 7.11 56.52 0.40 -8.39 16 31 H -0.31 -8.11 7.11 56.52 0.40 -7.70 16 32 H -0.28 -6.57 4.05 56.52 0.23 -6.34 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 35 H 0.10 2.29 6.38 -51.93 -0.33 1.96 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.19 2.88 4.12 -52.49 -0.22 2.66 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.08 1.08 3.03 -51.93 -0.16 0.92 16 42 H 0.09 1.86 7.66 -51.93 -0.40 1.47 16 43 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 47 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 48 H 0.02 0.34 4.40 -51.93 -0.23 0.11 16 49 H 0.06 1.23 0.95 -51.93 -0.05 1.18 16 50 H 0.27 8.62 8.73 -40.82 -0.36 8.26 16 LS Contribution 360.77 15.07 5.44 5.44 Total: -1.00 -36.06 360.77 -7.87 -43.92 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -7.46 Total: 2.88 kcal Atomic # 6 Polarization: 4.87 SS G_CDS: -1.96 Total: 2.91 kcal Atomic # 7 Polarization: -64.92 SS G_CDS: 0.25 Total: -64.67 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.08 Total: -13.32 kcal Atomic # 14 Polarization: 27.06 SS G_CDS: -4.21 Total: 22.84 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -36.06 -7.87 -43.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087342623.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.142 kcal (2) G-P(sol) polarization free energy of solvation -36.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 128.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds