Wall clock time and date at job start Wed Apr 1 2020 03:55:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30443 * 125.98880 * 2 1 4 4 N 1.39937 * 108.89930 * 180.25876 * 3 2 1 5 5 C 1.46496 * 125.75757 * 179.77526 * 4 3 2 6 6 C 1.34266 * 108.48751 * 359.75209 * 4 3 2 7 7 C 1.38042 * 107.41972 * 0.02562 * 6 4 3 8 8 C 1.47425 * 126.41683 * 179.97438 * 7 6 4 9 9 O 1.21601 * 119.99838 * 195.89856 * 8 7 6 10 10 N 1.34775 * 119.99809 * 15.88835 * 8 7 6 11 11 C 1.48150 * 127.84012 * 10.00019 * 10 8 7 12 12 C 1.54383 * 104.61162 * 219.54189 * 11 10 8 13 13 H 1.09004 * 111.26822 * 216.26350 * 12 11 10 14 14 C 1.54166 * 104.99656 * 336.19051 * 12 11 10 15 15 H 1.08993 * 111.00003 * 239.28656 * 14 12 11 16 16 C 1.48152 * 127.83511 * 190.00587 * 10 8 7 17 17 C 1.53278 * 109.34358 * 116.56560 * 14 12 11 18 18 H 1.08997 * 110.92670 * 182.14345 * 17 14 12 19 19 C 1.53324 * 108.74847 * 60.43914 * 17 14 12 20 20 C 1.52929 * 109.58833 * 299.32495 * 19 17 14 21 21 C 1.52987 * 109.08165 * 93.79019 * 12 11 10 22 22 H 1.08995 * 110.13210 * 65.76501 * 21 12 11 23 23 C 1.53597 * 109.29260 * 305.26372 * 21 12 11 24 24 N 1.47639 * 106.74418 * 300.53021 * 23 21 12 25 25 C 1.36935 * 122.07083 * 179.97438 * 24 23 21 26 26 H 1.08005 * 120.00275 * 175.34261 * 25 24 23 27 27 C 1.38810 * 120.00251 * 355.34180 * 25 24 23 28 28 N 1.31620 * 120.00465 * 213.30420 * 27 25 24 29 29 Si 1.86797 * 119.99748 * 33.29683 * 27 25 24 30 30 H 1.48505 * 109.47295 * 174.02706 * 29 27 25 31 31 H 1.48507 * 109.47211 * 54.03000 * 29 27 25 32 32 H 1.48504 * 109.47673 * 294.03143 * 29 27 25 33 33 H 1.09004 * 109.47151 * 270.14184 * 1 2 3 34 34 H 1.09000 * 109.46984 * 30.14559 * 1 2 3 35 35 H 1.09003 * 109.46837 * 150.14777 * 1 2 3 36 36 H 1.09003 * 109.46870 * 269.97501 * 5 4 3 37 37 H 1.08998 * 109.47192 * 29.97010 * 5 4 3 38 38 H 1.09000 * 109.47113 * 149.97428 * 5 4 3 39 39 H 1.07995 * 126.28590 * 180.02562 * 6 4 3 40 40 H 1.08997 * 110.40606 * 100.75898 * 11 10 8 41 41 H 1.09000 * 110.40762 * 338.32376 * 11 10 8 42 42 H 1.09002 * 110.41730 * 21.64161 * 16 10 8 43 43 H 1.09006 * 110.40636 * 259.20295 * 16 10 8 44 44 H 1.08997 * 109.45111 * 59.36395 * 19 17 14 45 45 H 1.08997 * 109.44564 * 179.31661 * 19 17 14 46 46 H 1.09004 * 109.38224 * 120.87024 * 20 19 17 47 47 H 1.09005 * 109.38462 * 240.54360 * 20 19 17 48 48 H 1.08998 * 110.12484 * 181.15039 * 23 21 12 49 49 H 1.09003 * 109.86860 * 59.76369 * 23 21 12 50 50 H 0.97004 * 119.99958 * 4.99380 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2736 1.0555 0.0000 4 7 3.6111 0.6442 -0.0060 5 6 4.7787 1.5290 -0.0126 6 6 3.6439 -0.6980 -0.0042 7 6 2.3373 -1.1433 0.0024 8 6 1.8915 -2.5485 0.0059 9 8 0.7410 -2.8221 -0.2770 10 7 2.7594 -3.5299 0.3224 11 6 4.1230 -3.3909 0.8846 12 6 4.9564 -4.4667 0.1555 13 1 5.6970 -4.9111 0.8205 14 6 3.9308 -5.5216 -0.3049 15 1 4.1582 -6.4991 0.1203 16 6 2.5661 -4.9925 0.1871 17 6 3.9157 -5.5804 -1.8365 18 1 3.1709 -6.2927 -2.1914 19 6 5.3132 -5.9753 -2.3283 20 6 6.3312 -4.9281 -1.8748 21 6 5.6319 -3.8351 -1.0632 22 1 6.3624 -3.0919 -0.7440 23 6 4.5663 -3.1664 -1.9444 24 7 3.6189 -4.2258 -2.3440 25 6 2.5353 -3.9693 -3.1411 26 1 1.9062 -4.7812 -3.4749 27 6 2.2455 -2.6657 -3.5201 28 7 0.9944 -2.2899 -3.6812 29 14 3.6310 -1.4449 -3.8013 30 1 3.0725 -0.1762 -4.3340 31 1 4.5972 -2.0089 -4.7780 32 1 4.3252 -1.1790 -2.5157 33 1 -0.3634 0.0025 1.0277 34 1 -0.3633 0.8887 -0.5161 35 1 -0.3633 -0.8913 -0.5116 36 1 5.0636 1.7469 -1.0419 37 1 4.5331 2.4585 0.5010 38 1 5.6081 1.0398 0.4982 39 1 4.5298 -1.3157 -0.0072 40 1 4.1128 -3.5807 1.9579 41 1 4.5201 -2.3972 0.6772 42 1 1.7884 -5.2071 -0.5460 43 1 2.3127 -5.4333 1.1513 44 1 5.5827 -6.9468 -1.9141 45 1 5.3121 -6.0324 -3.4168 46 1 7.0917 -5.4064 -1.2575 47 1 6.8053 -4.4820 -2.7491 48 1 5.0310 -2.7290 -2.8281 49 1 4.0457 -2.3959 -1.3757 50 1 0.2727 -2.9011 -3.4655 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087342623.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:36 Heat of formation + Delta-G solvation = 94.228592 kcal Electronic energy + Delta-G solvation = -34530.102456 eV Core-core repulsion = 30560.371875 eV Total energy + Delta-G solvation = -3969.730581 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.68587 -41.79378 -39.34348 -36.86708 -35.17468 -34.85340 -33.57795 -32.64212 -31.87326 -30.82091 -30.28668 -28.43780 -27.10309 -26.58136 -25.38320 -24.11866 -23.04688 -22.16087 -22.10243 -21.29649 -20.14252 -19.53217 -18.31865 -17.81635 -17.43892 -17.26640 -16.85712 -16.46831 -16.36087 -16.05793 -15.57613 -15.37500 -15.08041 -14.68590 -14.32229 -14.29194 -14.13455 -13.98872 -13.83921 -13.61039 -13.47856 -13.26908 -13.21079 -12.95215 -12.91891 -12.80273 -12.59417 -12.57300 -12.31831 -12.12884 -11.97035 -11.86305 -11.59428 -11.46923 -10.98909 -10.85660 -10.59739 -10.56896 -10.29140 -10.14208 -9.61858 -9.21764 -8.83113 -8.42189 -5.06293 0.58429 1.19344 1.24527 1.41127 1.51027 1.61738 2.32885 2.62650 2.68191 3.14758 3.39499 3.46209 3.50274 3.69591 3.72154 3.84865 4.06098 4.17499 4.25388 4.31760 4.36542 4.38939 4.41928 4.45293 4.50842 4.55179 4.56777 4.63189 4.68098 4.69858 4.80029 4.82066 4.91684 4.93919 4.97075 5.02616 5.04802 5.06598 5.11402 5.21518 5.30953 5.37702 5.42969 5.48267 5.56073 5.61695 5.78238 5.88915 5.96172 6.33435 6.57325 6.95154 7.09494 7.61839 7.81335 8.30565 9.03474 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011599 B = 0.006617 C = 0.006383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2413.488392 B = 4230.770177 C = 4385.652610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.107 3.893 3 N -0.324 5.324 4 N -0.360 5.360 5 C 0.082 3.918 6 C 0.095 3.905 7 C -0.294 4.294 8 C 0.621 3.379 9 O -0.582 6.582 10 N -0.611 5.611 11 C 0.084 3.916 12 C -0.073 4.073 13 H 0.139 0.861 14 C -0.099 4.099 15 H 0.122 0.878 16 C 0.129 3.871 17 C 0.166 3.834 18 H 0.037 0.963 19 C -0.127 4.127 20 C -0.099 4.099 21 C -0.096 4.096 22 H 0.110 0.890 23 C 0.116 3.884 24 N -0.600 5.600 25 C -0.313 4.313 26 H 0.024 0.976 27 C -0.048 4.048 28 N -0.932 5.932 29 Si 1.064 2.936 30 H -0.342 1.342 31 H -0.307 1.307 32 H -0.228 1.228 33 H 0.093 0.907 34 H 0.074 0.926 35 H 0.064 0.936 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.132 0.868 39 H 0.220 0.780 40 H 0.101 0.899 41 H 0.085 0.915 42 H 0.026 0.974 43 H 0.078 0.922 44 H 0.088 0.912 45 H 0.028 0.972 46 H 0.100 0.900 47 H 0.044 0.956 48 H -0.005 1.005 49 H 0.052 0.948 50 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.291 -0.954 15.874 24.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.059 4.059 3 N -0.147 5.147 4 N -0.139 5.139 5 C -0.056 4.056 6 C -0.056 4.056 7 C -0.309 4.309 8 C 0.412 3.588 9 O -0.462 6.462 10 N -0.343 5.343 11 C -0.038 4.038 12 C -0.092 4.092 13 H 0.157 0.843 14 C -0.120 4.120 15 H 0.139 0.861 16 C 0.006 3.994 17 C 0.060 3.940 18 H 0.055 0.945 19 C -0.166 4.166 20 C -0.136 4.136 21 C -0.114 4.114 22 H 0.128 0.872 23 C -0.007 4.007 24 N -0.325 5.325 25 C -0.443 4.443 26 H 0.042 0.958 27 C -0.245 4.245 28 N -0.574 5.574 29 Si 0.897 3.103 30 H -0.273 1.273 31 H -0.236 1.236 32 H -0.153 1.153 33 H 0.111 0.889 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.100 0.900 37 H 0.124 0.876 38 H 0.150 0.850 39 H 0.236 0.764 40 H 0.119 0.881 41 H 0.102 0.898 42 H 0.045 0.955 43 H 0.096 0.904 44 H 0.106 0.894 45 H 0.047 0.953 46 H 0.118 0.882 47 H 0.063 0.937 48 H 0.012 0.988 49 H 0.069 0.931 50 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 18.095 1.911 15.207 23.714 hybrid contribution -1.651 -2.399 -1.149 3.131 sum 16.444 -0.488 14.058 21.640 Atomic orbital electron populations 1.20210 0.86302 1.03122 1.03301 1.22555 0.97693 0.89625 0.95980 1.76976 0.87526 1.22503 1.27737 1.48711 1.06176 1.05218 1.53776 1.22478 0.83111 0.95031 1.04999 1.24000 0.99008 0.85453 0.97150 1.20291 0.93366 0.94034 1.23206 1.16775 0.83756 0.83493 0.74755 1.90668 1.20676 1.83907 1.50944 1.48381 1.16557 1.05821 1.63573 1.23160 0.81199 1.00582 0.98820 1.22130 0.96729 0.94367 0.95949 0.84276 1.22687 0.93372 1.00155 0.95795 0.86053 1.22067 0.98061 0.80123 0.99158 1.20876 0.94824 0.85484 0.92860 0.94505 1.21998 0.95527 0.99785 0.99286 1.21381 0.97270 0.95625 0.99336 1.21633 0.96250 0.98411 0.95143 0.87197 1.22174 0.90999 0.92348 0.95225 1.44641 1.27176 1.04250 1.56450 1.19689 1.02925 0.92885 1.28752 0.95769 1.26068 1.00644 0.96806 1.01016 1.70919 0.99301 1.35256 1.51932 0.84231 0.74613 0.73360 0.78053 1.27344 1.23592 1.15281 0.88883 0.90685 0.91717 0.90010 0.87622 0.84976 0.76402 0.88113 0.89772 0.95519 0.90410 0.89380 0.95275 0.88163 0.93723 0.98753 0.93067 0.94916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.91 10.09 71.24 0.72 -2.19 16 2 C 0.11 4.61 7.26 43.52 0.32 4.92 16 3 N -0.32 -12.48 12.50 -46.67 -0.58 -13.06 16 4 N -0.36 -10.96 3.98 -367.79 -1.46 -12.43 16 5 C 0.08 1.38 11.44 127.77 1.46 2.84 16 6 C 0.09 3.05 7.72 84.27 0.65 3.70 16 7 C -0.29 -12.30 5.71 -20.15 -0.12 -12.42 16 8 C 0.62 28.54 7.19 86.66 0.62 29.17 16 9 O -0.58 -32.82 15.33 -4.04 -0.06 -32.88 16 10 N -0.61 -22.02 1.98 -811.75 -1.61 -23.62 16 11 C 0.08 1.90 5.66 86.53 0.49 2.39 16 12 C -0.07 -1.41 3.17 -9.93 -0.03 -1.44 16 13 H 0.14 1.37 8.14 -2.38 -0.02 1.35 16 14 C -0.10 -2.58 3.21 -9.82 -0.03 -2.61 16 15 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 16 C 0.13 4.41 6.13 86.54 0.53 4.94 16 17 C 0.17 5.90 2.88 44.97 0.13 6.02 16 18 H 0.04 1.51 8.00 -2.39 -0.02 1.49 16 19 C -0.13 -3.52 5.85 30.68 0.18 -3.34 16 20 C -0.10 -2.19 5.65 30.58 0.17 -2.02 16 21 C -0.10 -2.25 2.71 -10.58 -0.03 -2.28 16 22 H 0.11 1.76 8.14 -2.39 -0.02 1.75 16 23 C 0.12 4.41 2.74 86.36 0.24 4.64 16 24 N -0.60 -27.19 2.01 -670.09 -1.34 -28.53 16 25 C -0.31 -18.54 10.13 84.03 0.85 -17.69 16 26 H 0.02 1.62 8.03 -2.91 -0.02 1.60 16 27 C -0.05 -2.99 5.40 84.86 0.46 -2.53 16 28 N -0.93 -64.24 13.70 21.65 0.30 -63.95 16 29 Si 1.06 56.51 24.78 68.60 1.70 58.21 16 30 H -0.34 -19.97 7.11 99.48 0.71 -19.27 16 31 H -0.31 -15.92 7.11 99.48 0.71 -15.21 16 32 H -0.23 -9.91 4.05 99.48 0.40 -9.51 16 33 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 34 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 35 H 0.06 3.18 6.38 -2.39 -0.02 3.17 16 36 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.13 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.22 5.41 4.12 -2.91 -0.01 5.40 16 40 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.08 1.78 3.03 -2.39 -0.01 1.77 16 42 H 0.03 1.22 7.66 -2.39 -0.02 1.20 16 43 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 44 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.10 1.41 8.14 -2.39 -0.02 1.39 16 47 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 48 H 0.00 -0.20 4.40 -2.39 -0.01 -0.21 16 49 H 0.05 2.02 0.95 -2.39 0.00 2.01 16 50 H 0.24 17.44 8.73 -92.70 -0.81 16.63 16 Total: -1.00 -95.08 360.77 4.18 -90.90 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 0.63 Total: 13.22 kcal Atomic # 6 Polarization: 5.52 SS G_CDS: 6.61 Total: 12.13 kcal Atomic # 7 Polarization: -136.88 SS G_CDS: -4.70 Total: -141.58 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -0.06 Total: -32.88 kcal Atomic # 14 Polarization: 56.51 SS G_CDS: 1.70 Total: 58.21 kcal Total: -95.08 4.18 -90.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087342623.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.133 kcal (2) G-P(sol) polarization free energy of solvation -95.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds