Wall clock time and date at job start Wed Apr 1 2020 04:26:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33321 * 126.10628 * 2 1 4 4 C 1.30861 * 109.68103 * 180.27981 * 3 2 1 5 5 N 1.34492 * 109.16596 * 359.76595 * 4 3 2 6 6 C 1.46500 * 126.47366 * 179.97438 * 5 4 3 7 7 C 1.36664 * 126.10832 * 179.88931 * 2 1 3 8 8 C 1.46763 * 126.84032 * 359.97438 * 7 2 1 9 9 O 1.21688 * 120.00217 * 276.55443 * 8 7 2 10 10 N 1.34777 * 120.00359 * 96.56003 * 8 7 2 11 11 C 1.49832 * 125.88498 * 175.07031 * 10 8 7 12 12 C 1.49343 * 102.29384 * 203.28414 * 11 10 8 13 13 H 1.08996 * 105.94775 * 65.49580 * 12 11 10 14 14 C 1.56053 * 101.39020 * 317.15385 * 12 11 10 15 15 H 1.09008 * 109.86550 * 291.26840 * 14 12 11 16 16 C 1.49143 * 125.87731 * 355.10412 * 10 8 7 17 17 C 1.51958 * 103.97025 * 173.84015 * 14 12 11 18 18 H 1.09005 * 113.74660 * 208.55820 * 17 14 12 19 19 C 1.56084 * 103.10293 * 83.98337 * 17 14 12 20 20 C 1.53895 * 106.96947 * 322.24393 * 19 17 14 21 21 C 1.49096 * 130.14412 * 192.56460 * 12 11 10 22 22 H 1.09001 * 113.00810 * 329.47364 * 21 12 11 23 23 C 1.56822 * 103.17819 * 206.76634 * 21 12 11 24 24 N 1.49078 * 103.46939 * 323.28501 * 23 21 12 25 25 C 1.36939 * 122.59618 * 144.12191 * 24 23 21 26 26 H 1.07993 * 120.00200 * 199.23410 * 25 24 23 27 27 C 1.38815 * 119.99555 * 19.22577 * 25 24 23 28 28 N 1.31617 * 120.00007 * 14.43407 * 27 25 24 29 29 Si 1.86799 * 119.99795 * 194.42753 * 27 25 24 30 30 H 1.48505 * 109.47167 * 265.02267 * 29 27 25 31 31 H 1.48495 * 109.47148 * 145.01848 * 29 27 25 32 32 H 1.48500 * 109.46958 * 25.01483 * 29 27 25 33 33 H 1.09000 * 109.47169 * 270.11629 * 1 2 3 34 34 H 1.09001 * 109.47283 * 30.11808 * 1 2 3 35 35 H 1.08998 * 109.47199 * 150.11655 * 1 2 3 36 36 H 1.08000 * 125.41518 * 179.74020 * 4 3 2 37 37 H 1.08995 * 109.47232 * 274.69008 * 6 5 4 38 38 H 1.08998 * 109.46684 * 34.68905 * 6 5 4 39 39 H 1.08998 * 109.47066 * 154.68553 * 6 5 4 40 40 H 1.08998 * 110.84357 * 321.48697 * 11 10 8 41 41 H 1.09002 * 110.83806 * 84.88279 * 11 10 8 42 42 H 1.09002 * 110.28773 * 67.58705 * 16 10 8 43 43 H 1.09001 * 110.37426 * 305.50804 * 16 10 8 44 44 H 1.08997 * 109.95272 * 81.60857 * 19 17 14 45 45 H 1.09004 * 109.94798 * 202.88289 * 19 17 14 46 46 H 1.09004 * 109.53942 * 206.38105 * 20 19 17 47 47 H 1.09002 * 109.53975 * 86.12616 * 20 19 17 48 48 H 1.08992 * 110.73191 * 204.77210 * 23 21 12 49 49 H 1.09004 * 110.59327 * 81.71826 * 23 21 12 50 50 H 0.97006 * 119.99846 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2927 1.0771 0.0000 4 6 3.5478 0.7071 -0.0060 5 7 3.6122 -0.6363 -0.0049 6 6 4.8305 -1.4498 -0.0108 7 6 2.3124 -1.1041 0.0021 8 6 1.8820 -2.5072 0.0054 9 8 1.5890 -3.0514 1.0536 10 7 1.8115 -3.1932 -1.1526 11 6 1.4916 -4.6503 -1.2922 12 6 2.1053 -4.9856 -2.6118 13 1 3.1805 -4.8630 -2.4819 14 6 1.6847 -3.7518 -3.4696 15 1 0.6076 -3.7667 -3.6369 16 6 2.0391 -2.6327 -2.5158 17 6 2.4127 -3.9562 -4.7878 18 1 2.6486 -3.0275 -5.3075 19 6 1.4617 -4.9134 -5.5724 20 6 0.8803 -5.9061 -4.5503 21 6 1.9448 -6.1967 -3.4665 22 1 1.7486 -7.1014 -2.8910 23 6 3.2927 -6.2510 -4.2662 24 7 3.6025 -4.8155 -4.5225 25 6 4.8810 -4.3249 -4.5206 26 1 5.0527 -3.2657 -4.3994 27 6 5.9562 -5.1893 -4.6744 28 7 5.7568 -6.4182 -5.1014 29 14 7.6861 -4.6083 -4.2754 30 1 8.3470 -4.1318 -5.5170 31 1 8.4659 -5.7335 -3.7001 32 1 7.6207 -3.4975 -3.2921 33 1 -0.3633 0.0021 1.0277 34 1 -0.3634 0.8889 -0.5157 35 1 -0.3633 -0.8910 -0.5120 36 1 4.3970 1.3744 -0.0114 37 1 5.1736 -1.5828 -1.0368 38 1 5.6051 -0.9482 0.5692 39 1 4.6192 -2.4237 0.4308 40 1 1.9543 -5.2274 -0.4915 41 1 0.4136 -4.8107 -1.3103 42 1 3.0843 -2.3485 -2.6380 43 1 1.3917 -1.7722 -2.6853 44 1 0.6571 -4.3416 -6.0347 45 1 2.0233 -5.4517 -6.3360 46 1 0.6116 -6.8339 -5.0553 47 1 -0.0052 -5.4733 -4.0847 48 1 3.1628 -6.7888 -5.2053 49 1 4.0770 -6.7108 -3.6648 50 1 6.5082 -7.0222 -5.2093 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087367619.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:11 Heat of formation + Delta-G solvation = 97.887303 kcal Electronic energy + Delta-G solvation = -32552.934551 eV Core-core repulsion = 28583.362623 eV Total energy + Delta-G solvation = -3969.571927 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.22676 -41.01677 -38.75488 -35.98891 -34.49613 -33.28410 -31.65150 -31.15216 -30.23096 -29.93688 -28.39537 -27.53022 -26.11849 -25.40550 -24.23203 -22.22751 -21.87895 -20.91559 -20.65700 -20.31112 -19.01166 -17.56964 -17.28865 -16.90213 -16.51536 -15.82123 -15.64770 -15.17015 -15.07679 -14.65532 -14.50509 -14.33923 -13.93040 -13.59995 -13.23259 -13.14059 -12.83097 -12.72195 -12.56753 -12.54705 -12.36108 -12.24343 -12.20815 -11.72325 -11.48014 -11.26607 -11.13785 -11.04847 -10.86844 -10.72913 -10.46683 -10.37991 -10.18839 -10.10449 -9.85661 -9.78526 -9.62724 -9.24651 -9.10129 -8.61757 -8.53363 -8.39795 -6.88774 -5.89094 -3.24306 1.68834 2.21851 2.82778 2.95151 3.17910 3.26913 3.32274 3.35615 4.34085 4.38723 4.47362 4.62667 4.74679 4.90247 5.00326 5.05793 5.19105 5.21945 5.27359 5.38147 5.39032 5.47888 5.53324 5.62246 5.64021 5.66363 5.77927 5.79670 5.85956 5.87062 5.88151 6.02769 6.12040 6.13679 6.18469 6.27350 6.29548 6.38533 6.41984 6.55119 6.56364 6.72218 6.84481 6.93545 7.02645 7.13622 7.30488 7.49377 7.54671 7.66404 7.93010 8.12756 8.16704 9.03846 9.67026 10.29764 11.21596 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010876 B = 0.004639 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2573.812139 B = 6034.239856 C = 7551.551882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.052 3.948 3 N -0.493 5.493 4 C 0.197 3.803 5 N -0.435 5.435 6 C 0.067 3.933 7 C -0.065 4.065 8 C 0.610 3.390 9 O -0.535 6.535 10 N -0.607 5.607 11 C 0.135 3.865 12 C -0.119 4.119 13 H 0.099 0.901 14 C -0.128 4.128 15 H 0.072 0.928 16 C 0.124 3.876 17 C 0.179 3.821 18 H 0.078 0.922 19 C -0.129 4.129 20 C -0.108 4.108 21 C -0.096 4.096 22 H 0.076 0.924 23 C 0.189 3.811 24 N -0.594 5.594 25 C -0.244 4.244 26 H 0.067 0.933 27 C 0.001 3.999 28 N -0.908 5.908 29 Si 0.900 3.100 30 H -0.289 1.289 31 H -0.290 1.290 32 H -0.282 1.282 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.210 0.790 37 H 0.090 0.910 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.063 0.937 42 H 0.069 0.931 43 H 0.063 0.937 44 H 0.050 0.950 45 H 0.071 0.929 46 H 0.053 0.947 47 H 0.050 0.950 48 H 0.036 0.964 49 H 0.072 0.928 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.349 7.063 5.452 11.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.081 4.081 3 N -0.212 5.212 4 C -0.085 4.085 5 N -0.117 5.117 6 C -0.075 4.075 7 C -0.182 4.182 8 C 0.395 3.605 9 O -0.412 6.412 10 N -0.341 5.341 11 C 0.015 3.985 12 C -0.138 4.138 13 H 0.117 0.883 14 C -0.150 4.150 15 H 0.090 0.910 16 C 0.002 3.998 17 C 0.071 3.929 18 H 0.096 0.904 19 C -0.168 4.168 20 C -0.146 4.146 21 C -0.116 4.116 22 H 0.094 0.906 23 C 0.065 3.935 24 N -0.317 5.317 25 C -0.373 4.373 26 H 0.085 0.915 27 C -0.197 4.197 28 N -0.553 5.553 29 Si 0.731 3.269 30 H -0.216 1.216 31 H -0.216 1.216 32 H -0.208 1.208 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.226 0.774 37 H 0.108 0.892 38 H 0.111 0.889 39 H 0.105 0.895 40 H 0.093 0.907 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.082 0.918 44 H 0.068 0.932 45 H 0.090 0.910 46 H 0.072 0.928 47 H 0.069 0.931 48 H 0.054 0.946 49 H 0.090 0.910 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -7.399 7.389 6.051 12.082 hybrid contribution 1.570 -0.467 0.082 1.640 sum -5.829 6.923 6.134 10.933 Atomic orbital electron populations 1.20084 0.87270 1.02726 1.02641 1.20768 0.96283 0.86823 1.04253 1.69985 1.00362 1.30072 1.20811 1.24927 0.97141 0.81666 1.04736 1.45287 1.05973 1.07758 1.52688 1.22216 0.84301 0.96213 1.04801 1.20649 0.84834 0.94884 1.17819 1.16481 0.78106 0.83172 0.82723 1.90827 1.50221 1.69134 1.30991 1.49748 1.67776 1.10628 1.05953 1.21179 0.99600 0.79508 0.98251 1.21026 1.04710 0.96068 0.92043 0.88274 1.22812 1.00350 0.94345 0.97451 0.91021 1.21550 1.01237 0.96414 0.80573 1.21244 0.87198 0.93792 0.90623 0.90414 1.22798 0.98174 0.97682 0.98154 1.22040 0.97407 0.98559 0.96545 1.21813 0.99287 0.95481 0.95026 0.90603 1.22088 0.90604 0.84743 0.96106 1.45536 1.00769 1.04135 1.81283 1.19087 0.81983 0.92864 1.43382 0.91490 1.24874 0.97694 0.96718 1.00397 1.69967 1.30043 1.06247 1.49084 0.86316 0.85053 0.77527 0.78046 1.21568 1.21634 1.20816 0.90932 0.90628 0.91506 0.77354 0.89191 0.88943 0.89492 0.90694 0.91845 0.91243 0.91816 0.93168 0.91013 0.92812 0.93102 0.94613 0.90992 0.93619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.86 10.24 36.01 0.37 -0.49 16 2 C 0.05 0.77 7.15 -82.51 -0.59 0.18 16 3 N -0.49 -7.25 11.20 -10.64 -0.12 -7.37 16 4 C 0.20 2.40 12.52 -90.57 -1.13 1.27 16 5 N -0.43 -5.75 3.17 -121.98 -0.39 -6.14 16 6 C 0.07 0.73 11.06 59.85 0.66 1.39 16 7 C -0.06 -1.01 5.87 -82.14 -0.48 -1.49 16 8 C 0.61 10.30 6.79 -12.82 -0.09 10.21 16 9 O -0.54 -10.56 17.47 5.20 0.09 -10.47 16 10 N -0.61 -9.58 3.43 -173.37 -0.59 -10.17 16 11 C 0.14 2.08 6.83 -3.99 -0.03 2.05 16 12 C -0.12 -1.95 2.28 -92.71 -0.21 -2.16 16 13 H 0.10 2.00 6.00 -51.93 -0.31 1.69 16 14 C -0.13 -1.98 2.34 -90.40 -0.21 -2.19 16 15 H 0.07 1.03 6.31 -51.92 -0.33 0.70 16 16 C 0.12 1.87 6.25 -3.46 -0.02 1.85 16 17 C 0.18 3.17 4.42 -65.34 -0.29 2.89 16 18 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 19 C -0.13 -2.07 5.46 -24.61 -0.13 -2.21 16 20 C -0.11 -1.59 5.30 -25.39 -0.13 -1.73 16 21 C -0.10 -1.58 4.25 -89.60 -0.38 -1.96 16 22 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 23 C 0.19 3.99 4.09 -0.55 0.00 3.99 16 24 N -0.59 -12.84 1.81 -157.92 -0.29 -13.13 16 25 C -0.24 -5.99 9.86 -15.06 -0.15 -6.14 16 26 H 0.07 1.62 7.87 -52.49 -0.41 1.21 16 27 C 0.00 0.03 5.16 -17.43 -0.09 -0.06 16 28 N -0.91 -24.55 10.96 55.49 0.61 -23.94 16 29 Si 0.90 20.40 29.58 -169.99 -5.03 15.37 16 30 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 31 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 32 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.81 7.94 -51.93 -0.41 0.39 16 36 H 0.21 1.63 8.06 -52.49 -0.42 1.20 16 37 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.09 1.07 7.80 -51.93 -0.41 0.66 16 40 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.07 1.32 7.31 -51.93 -0.38 0.94 16 46 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 47 H 0.05 0.68 6.93 -51.93 -0.36 0.32 16 48 H 0.04 0.82 7.20 -51.93 -0.37 0.45 16 49 H 0.07 1.74 6.80 -51.93 -0.35 1.39 16 50 H 0.25 6.75 8.31 -40.82 -0.34 6.41 16 LS Contribution 387.06 15.07 5.83 5.83 Total: -1.00 -30.36 387.06 -10.76 -41.12 By element: Atomic # 1 Polarization: 11.44 SS G_CDS: -7.97 Total: 3.48 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: -2.91 Total: 5.41 kcal Atomic # 7 Polarization: -59.97 SS G_CDS: -0.78 Total: -60.75 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.47 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.03 Total: 15.37 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.36 -10.76 -41.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087367619.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.008 kcal (2) G-P(sol) polarization free energy of solvation -30.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.121 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds