Wall clock time and date at job start Wed Apr 1 2020 04:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.33313 * 126.10670 * 2 1 4 4 C 1.30856 * 109.68671 * 179.97438 * 3 2 1 5 5 N 1.34497 * 109.15995 * 0.02562 * 4 3 2 6 6 C 1.46504 * 126.46710 * 180.02562 * 5 4 3 7 7 C 1.36662 * 126.10591 * 179.97438 * 2 1 3 8 8 C 1.46761 * 126.84693 * 0.02562 * 7 2 1 9 9 O 1.21686 * 120.00020 * 85.87568 * 8 7 2 10 10 N 1.34778 * 120.00627 * 265.87826 * 8 7 2 11 11 C 1.48153 * 127.84029 * 184.90289 * 10 8 7 12 12 C 1.54729 * 104.39962 * 140.37934 * 11 10 8 13 13 H 1.08999 * 110.96840 * 264.53089 * 12 11 10 14 14 C 1.54162 * 104.97192 * 24.27207 * 12 11 10 15 15 H 1.09002 * 110.99027 * 239.64800 * 14 12 11 16 16 C 1.48151 * 127.83183 * 5.22054 * 10 8 7 17 17 C 1.53255 * 109.37770 * 116.26771 * 14 12 11 18 18 H 1.08994 * 110.52124 * 181.95892 * 17 14 12 19 19 C 1.54473 * 108.07638 * 61.05514 * 17 14 12 20 20 C 1.52923 * 109.46947 * 298.90698 * 19 17 14 21 21 C 1.52984 * 109.41711 * 142.02853 * 12 11 10 22 22 H 1.09000 * 109.63966 * 66.00780 * 21 12 11 23 23 C 1.53600 * 109.12005 * 305.26363 * 21 12 11 24 24 N 1.47537 * 107.17839 * 301.04568 * 23 21 12 25 25 C 1.36938 * 122.48236 * 179.78581 * 24 23 21 26 26 H 1.08005 * 119.99893 * 173.46691 * 25 24 23 27 27 C 1.38804 * 119.99988 * 353.47381 * 25 24 23 28 28 N 1.31624 * 120.00205 * 7.68134 * 27 25 24 29 29 Si 1.86803 * 119.99928 * 187.67311 * 27 25 24 30 30 H 1.48500 * 109.46742 * 94.99219 * 29 27 25 31 31 H 1.48502 * 109.47407 * 214.98832 * 29 27 25 32 32 H 1.48495 * 109.47415 * 334.99001 * 29 27 25 33 33 H 1.09003 * 109.47321 * 90.02631 * 1 2 3 34 34 H 1.09003 * 109.47138 * 210.02290 * 1 2 3 35 35 H 1.08992 * 109.47396 * 330.02227 * 1 2 3 36 36 H 1.08004 * 125.41778 * 180.02562 * 4 3 2 37 37 H 1.09002 * 109.46761 * 85.17407 * 6 5 4 38 38 H 1.09000 * 109.47121 * 205.16907 * 6 5 4 39 39 H 1.08990 * 109.47572 * 325.17337 * 6 5 4 40 40 H 1.08999 * 110.41568 * 259.19394 * 11 10 8 41 41 H 1.09001 * 110.41710 * 21.64653 * 11 10 8 42 42 H 1.08996 * 110.40584 * 338.25362 * 16 10 8 43 43 H 1.09005 * 110.40072 * 100.56399 * 16 10 8 44 44 H 1.08997 * 109.31027 * 179.04298 * 19 17 14 45 45 H 1.09004 * 109.73152 * 59.03427 * 19 17 14 46 46 H 1.08997 * 109.38391 * 240.75505 * 20 19 17 47 47 H 1.09005 * 109.37749 * 121.09002 * 20 19 17 48 48 H 1.09005 * 110.00061 * 59.54794 * 23 21 12 49 49 H 1.08999 * 109.99917 * 180.93768 * 23 21 12 50 50 H 0.96998 * 120.00141 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.0771 0.0000 4 6 3.5478 0.7072 0.0006 5 7 3.6121 -0.6363 0.0004 6 6 4.8306 -1.4497 0.0013 7 6 2.3124 -1.1041 0.0005 8 6 1.8821 -2.5073 0.0006 9 8 1.6317 -3.0669 -1.0505 10 7 1.7643 -3.1760 1.1648 11 6 1.4444 -4.6092 1.3613 12 6 2.3588 -5.0510 2.5288 13 1 3.2768 -5.5045 2.1551 14 6 2.6653 -3.7558 3.3066 15 1 3.7374 -3.5606 3.3329 16 6 1.9190 -2.6432 2.5385 17 6 2.0798 -3.8602 4.7190 18 1 2.2560 -2.9393 5.2748 19 6 2.7529 -5.0551 5.4298 20 6 2.4494 -6.3420 4.6616 21 6 1.5990 -6.0276 3.4283 22 1 1.3944 -6.9473 2.8801 23 6 0.2832 -5.3763 3.8797 24 7 0.6346 -4.1362 4.5976 25 6 -0.3112 -3.3033 5.1332 26 1 -0.0091 -2.4629 5.7406 27 6 -1.6583 -3.5393 4.8957 28 7 -2.0357 -4.6429 4.2858 29 14 -2.9357 -2.2905 5.4419 30 1 -3.2585 -1.3851 4.3100 31 1 -4.1668 -2.9989 5.8756 32 1 -2.3976 -1.4948 6.5744 33 1 -0.3634 -0.0005 -1.0277 34 1 -0.3633 -0.8898 0.5142 35 1 -0.3634 0.8901 0.5134 36 1 4.3970 1.3745 0.0011 37 1 5.1798 -1.5797 1.0257 38 1 4.6168 -2.4249 -0.4361 39 1 5.6017 -0.9498 -0.5847 40 1 0.3952 -4.7312 1.6302 41 1 1.6755 -5.1774 0.4603 42 1 2.5100 -1.7275 2.5266 43 1 0.9426 -2.4588 2.9867 44 1 2.3627 -5.1375 6.4442 45 1 3.8313 -4.9009 5.4677 46 1 1.9067 -7.0306 5.3092 47 1 3.3849 -6.8049 4.3474 48 1 -0.3259 -5.1255 3.0111 49 1 -0.2626 -6.0544 4.5357 50 1 -2.9770 -4.8076 4.1195 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087367620.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:14 Heat of formation + Delta-G solvation = 69.112448 kcal Electronic energy + Delta-G solvation = -32797.507083 eV Core-core repulsion = 28826.687384 eV Total energy + Delta-G solvation = -3970.819699 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.18316 -40.53044 -38.51413 -35.57023 -34.49325 -33.43712 -31.75813 -31.36717 -30.22759 -29.82735 -28.38526 -27.06104 -26.11855 -25.37111 -24.43346 -22.14014 -21.88007 -21.13152 -20.61480 -20.49413 -18.92409 -17.64555 -17.13493 -16.51094 -15.98131 -15.77543 -15.65426 -15.23676 -15.07388 -14.84976 -14.35963 -14.15205 -13.84324 -13.56055 -13.33875 -13.00731 -12.81693 -12.67454 -12.43204 -12.28443 -12.26704 -12.06914 -11.99450 -11.88629 -11.53179 -11.29223 -11.13864 -11.02055 -10.71519 -10.61965 -10.54893 -10.29950 -10.20241 -9.88239 -9.81455 -9.74043 -9.59517 -9.34007 -9.27517 -8.52154 -8.34500 -8.29877 -6.90145 -5.73965 -3.09821 1.74063 2.25979 2.90212 3.02539 3.36572 3.38347 3.44308 3.46201 4.44593 4.47222 4.51019 4.59980 4.88212 4.93746 4.95496 5.08716 5.15454 5.17398 5.34282 5.38878 5.42954 5.56244 5.63148 5.70394 5.71203 5.85411 5.87780 5.88619 5.94396 5.97054 6.05002 6.07004 6.17886 6.20073 6.29079 6.32213 6.36151 6.46344 6.54337 6.63191 6.64845 6.68321 6.74086 6.91451 6.95705 7.05643 7.57523 7.64312 7.78870 7.84849 7.98700 8.25943 8.27475 9.19586 9.80326 10.34864 11.31962 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010403 B = 0.004947 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2690.840612 B = 5658.776984 C = 7070.069780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.059 3.941 3 N -0.491 5.491 4 C 0.194 3.806 5 N -0.440 5.440 6 C 0.071 3.929 7 C -0.063 4.063 8 C 0.611 3.389 9 O -0.540 6.540 10 N -0.602 5.602 11 C 0.105 3.895 12 C -0.079 4.079 13 H 0.065 0.935 14 C -0.109 4.109 15 H 0.066 0.934 16 C 0.110 3.890 17 C 0.179 3.821 18 H 0.068 0.932 19 C -0.130 4.130 20 C -0.100 4.100 21 C -0.111 4.111 22 H 0.066 0.934 23 C 0.194 3.806 24 N -0.593 5.593 25 C -0.240 4.240 26 H 0.075 0.925 27 C -0.001 4.001 28 N -0.917 5.917 29 Si 0.903 3.097 30 H -0.288 1.288 31 H -0.292 1.292 32 H -0.282 1.282 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.209 0.791 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.091 0.909 40 H 0.098 0.902 41 H 0.070 0.930 42 H 0.057 0.943 43 H 0.110 0.890 44 H 0.059 0.941 45 H 0.047 0.953 46 H 0.056 0.944 47 H 0.044 0.956 48 H 0.061 0.939 49 H 0.046 0.954 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.565 2.715 -4.671 15.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.074 4.074 3 N -0.210 5.210 4 C -0.088 4.088 5 N -0.124 5.124 6 C -0.071 4.071 7 C -0.179 4.179 8 C 0.397 3.603 9 O -0.417 6.417 10 N -0.333 5.333 11 C -0.016 4.016 12 C -0.098 4.098 13 H 0.084 0.916 14 C -0.130 4.130 15 H 0.084 0.916 16 C -0.012 4.012 17 C 0.069 3.931 18 H 0.087 0.913 19 C -0.170 4.170 20 C -0.138 4.138 21 C -0.130 4.130 22 H 0.084 0.916 23 C 0.071 3.929 24 N -0.317 5.317 25 C -0.368 4.368 26 H 0.093 0.907 27 C -0.197 4.197 28 N -0.564 5.564 29 Si 0.733 3.267 30 H -0.215 1.215 31 H -0.219 1.219 32 H -0.207 1.207 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.226 0.774 37 H 0.100 0.900 38 H 0.104 0.896 39 H 0.109 0.891 40 H 0.116 0.884 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.128 0.872 44 H 0.077 0.923 45 H 0.066 0.934 46 H 0.075 0.925 47 H 0.063 0.937 48 H 0.079 0.921 49 H 0.064 0.936 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 14.075 3.134 -5.347 15.379 hybrid contribution -0.144 -0.198 0.378 0.451 sum 13.931 2.936 -4.969 15.079 Atomic orbital electron populations 1.20145 0.86978 1.03439 1.02626 1.20843 0.96457 0.86722 1.03333 1.69990 1.00328 1.30192 1.20512 1.24910 0.97199 0.81566 1.05129 1.45228 1.05792 1.07687 1.53710 1.22108 0.84664 0.96393 1.03941 1.20650 0.84626 0.95009 1.17639 1.16382 0.78243 0.83080 0.82619 1.90820 1.51662 1.68230 1.30960 1.48952 1.67141 1.11457 1.05761 1.22793 1.01597 0.79626 0.97597 1.21953 0.97359 0.95896 0.94621 0.91622 1.22677 0.98020 0.94092 0.98216 0.91566 1.22699 1.03175 0.95569 0.79785 1.20701 0.85488 0.95495 0.91378 0.91348 1.22239 0.98489 0.96529 0.99743 1.21335 0.98285 0.97316 0.96840 1.21779 0.98444 0.97600 0.95216 0.91550 1.21263 0.88917 0.86468 0.96295 1.44540 0.98693 1.23917 1.64550 1.19213 0.86290 1.05763 1.25565 0.90694 1.24765 0.96962 0.97463 1.00527 1.70008 1.15074 1.24121 1.47224 0.86247 0.81537 0.80811 0.78074 1.21531 1.21889 1.20726 0.90939 0.90884 0.90504 0.77431 0.89972 0.89635 0.89083 0.88431 0.91194 0.92495 0.87227 0.92256 0.93407 0.92512 0.93709 0.92094 0.93582 0.93753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.15 10.24 36.01 0.37 -0.78 16 2 C 0.06 0.98 7.15 -82.52 -0.59 0.39 16 3 N -0.49 -7.64 11.20 -10.64 -0.12 -7.76 16 4 C 0.19 2.32 12.52 -90.57 -1.13 1.18 16 5 N -0.44 -5.53 3.17 -121.98 -0.39 -5.92 16 6 C 0.07 0.60 11.07 59.85 0.66 1.26 16 7 C -0.06 -1.02 5.54 -82.15 -0.45 -1.48 16 8 C 0.61 11.04 6.83 -12.82 -0.09 10.95 16 9 O -0.54 -11.30 17.41 5.20 0.09 -11.21 16 10 N -0.60 -10.40 3.31 -170.57 -0.57 -10.97 16 11 C 0.11 1.82 6.36 -2.22 -0.01 1.80 16 12 C -0.08 -1.22 3.10 -89.11 -0.28 -1.50 16 13 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 14 C -0.11 -1.68 3.14 -89.13 -0.28 -1.96 16 15 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 16 C 0.11 1.86 6.30 -2.39 -0.02 1.84 16 17 C 0.18 3.14 3.04 -66.40 -0.20 2.94 16 18 H 0.07 1.20 8.02 -51.93 -0.42 0.79 16 19 C -0.13 -2.05 5.91 -26.00 -0.15 -2.20 16 20 C -0.10 -1.54 5.65 -26.74 -0.15 -1.69 16 21 C -0.11 -1.86 2.89 -90.28 -0.26 -2.12 16 22 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 23 C 0.19 4.18 4.03 -3.16 -0.01 4.17 16 24 N -0.59 -12.89 1.99 -162.60 -0.32 -13.21 16 25 C -0.24 -5.95 9.23 -15.06 -0.14 -6.09 16 26 H 0.08 1.83 7.82 -52.48 -0.41 1.42 16 27 C 0.00 -0.01 5.46 -17.43 -0.10 -0.11 16 28 N -0.92 -24.92 9.88 55.49 0.55 -24.37 16 29 Si 0.90 21.16 29.56 -169.99 -5.02 16.13 16 30 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 31 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 32 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 33 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.07 1.22 7.94 -51.93 -0.41 0.81 16 35 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.21 1.48 8.06 -52.48 -0.42 1.06 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.83 7.80 -51.93 -0.40 0.42 16 39 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.10 1.95 5.35 -51.93 -0.28 1.67 16 41 H 0.07 1.17 7.93 -51.93 -0.41 0.76 16 42 H 0.06 0.91 7.39 -51.93 -0.38 0.52 16 43 H 0.11 2.26 6.32 -51.93 -0.33 1.93 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 46 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.06 1.47 4.75 -51.93 -0.25 1.22 16 49 H 0.05 1.14 7.43 -51.93 -0.39 0.76 16 50 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 382.98 15.07 5.77 5.77 Total: -1.00 -30.96 382.98 -10.73 -41.70 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -7.89 Total: 3.25 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: -2.84 Total: 6.59 kcal Atomic # 7 Polarization: -61.38 SS G_CDS: -0.85 Total: -62.23 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.09 Total: -11.21 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -30.96 -10.73 -41.70 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087367620.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.808 kcal (2) G-P(sol) polarization free energy of solvation -30.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds