Wall clock time and date at job start Wed Apr 1 2020 04:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.33313 * 126.10670 * 2 1 4 4 C 1.30856 * 109.68671 * 179.97438 * 3 2 1 5 5 N 1.34497 * 109.15995 * 0.02562 * 4 3 2 6 6 C 1.46504 * 126.46710 * 180.02562 * 5 4 3 7 7 C 1.36662 * 126.10591 * 179.97438 * 2 1 3 8 8 C 1.46761 * 126.84693 * 0.02562 * 7 2 1 9 9 O 1.21686 * 120.00020 * 85.87568 * 8 7 2 10 10 N 1.34778 * 120.00627 * 265.87826 * 8 7 2 11 11 C 1.48153 * 127.84029 * 184.90289 * 10 8 7 12 12 C 1.54729 * 104.39962 * 140.37934 * 11 10 8 13 13 H 1.08999 * 110.96840 * 264.53089 * 12 11 10 14 14 C 1.54162 * 104.97192 * 24.27207 * 12 11 10 15 15 H 1.09002 * 110.99027 * 239.64800 * 14 12 11 16 16 C 1.48151 * 127.83183 * 5.22054 * 10 8 7 17 17 C 1.53255 * 109.37770 * 116.26771 * 14 12 11 18 18 H 1.08994 * 110.52124 * 181.95892 * 17 14 12 19 19 C 1.54473 * 108.07638 * 61.05514 * 17 14 12 20 20 C 1.52923 * 109.46947 * 298.90698 * 19 17 14 21 21 C 1.52984 * 109.41711 * 142.02853 * 12 11 10 22 22 H 1.09000 * 109.63966 * 66.00780 * 21 12 11 23 23 C 1.53600 * 109.12005 * 305.26363 * 21 12 11 24 24 N 1.47537 * 107.17839 * 301.04568 * 23 21 12 25 25 C 1.36938 * 122.48236 * 179.78581 * 24 23 21 26 26 H 1.08005 * 119.99893 * 173.46691 * 25 24 23 27 27 C 1.38804 * 119.99988 * 353.47381 * 25 24 23 28 28 N 1.31624 * 120.00205 * 7.68134 * 27 25 24 29 29 Si 1.86803 * 119.99928 * 187.67311 * 27 25 24 30 30 H 1.48500 * 109.46742 * 94.99219 * 29 27 25 31 31 H 1.48502 * 109.47407 * 214.98832 * 29 27 25 32 32 H 1.48495 * 109.47415 * 334.99001 * 29 27 25 33 33 H 1.09003 * 109.47321 * 90.02631 * 1 2 3 34 34 H 1.09003 * 109.47138 * 210.02290 * 1 2 3 35 35 H 1.08992 * 109.47396 * 330.02227 * 1 2 3 36 36 H 1.08004 * 125.41778 * 180.02562 * 4 3 2 37 37 H 1.09002 * 109.46761 * 85.17407 * 6 5 4 38 38 H 1.09000 * 109.47121 * 205.16907 * 6 5 4 39 39 H 1.08990 * 109.47572 * 325.17337 * 6 5 4 40 40 H 1.08999 * 110.41568 * 259.19394 * 11 10 8 41 41 H 1.09001 * 110.41710 * 21.64653 * 11 10 8 42 42 H 1.08996 * 110.40584 * 338.25362 * 16 10 8 43 43 H 1.09005 * 110.40072 * 100.56399 * 16 10 8 44 44 H 1.08997 * 109.31027 * 179.04298 * 19 17 14 45 45 H 1.09004 * 109.73152 * 59.03427 * 19 17 14 46 46 H 1.08997 * 109.38391 * 240.75505 * 20 19 17 47 47 H 1.09005 * 109.37749 * 121.09002 * 20 19 17 48 48 H 1.09005 * 110.00061 * 59.54794 * 23 21 12 49 49 H 1.08999 * 109.99917 * 180.93768 * 23 21 12 50 50 H 0.96998 * 120.00141 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2926 1.0771 0.0000 4 6 3.5478 0.7072 0.0006 5 7 3.6121 -0.6363 0.0004 6 6 4.8306 -1.4497 0.0013 7 6 2.3124 -1.1041 0.0005 8 6 1.8821 -2.5073 0.0006 9 8 1.6317 -3.0669 -1.0505 10 7 1.7643 -3.1760 1.1648 11 6 1.4444 -4.6092 1.3613 12 6 2.3588 -5.0510 2.5288 13 1 3.2768 -5.5045 2.1551 14 6 2.6653 -3.7558 3.3066 15 1 3.7374 -3.5606 3.3329 16 6 1.9190 -2.6432 2.5385 17 6 2.0798 -3.8602 4.7190 18 1 2.2560 -2.9393 5.2748 19 6 2.7529 -5.0551 5.4298 20 6 2.4494 -6.3420 4.6616 21 6 1.5990 -6.0276 3.4283 22 1 1.3944 -6.9473 2.8801 23 6 0.2832 -5.3763 3.8797 24 7 0.6346 -4.1362 4.5976 25 6 -0.3112 -3.3033 5.1332 26 1 -0.0091 -2.4629 5.7406 27 6 -1.6583 -3.5393 4.8957 28 7 -2.0357 -4.6429 4.2858 29 14 -2.9357 -2.2905 5.4419 30 1 -3.2585 -1.3851 4.3100 31 1 -4.1668 -2.9989 5.8756 32 1 -2.3976 -1.4948 6.5744 33 1 -0.3634 -0.0005 -1.0277 34 1 -0.3633 -0.8898 0.5142 35 1 -0.3634 0.8901 0.5134 36 1 4.3970 1.3745 0.0011 37 1 5.1798 -1.5797 1.0257 38 1 4.6168 -2.4249 -0.4361 39 1 5.6017 -0.9498 -0.5847 40 1 0.3952 -4.7312 1.6302 41 1 1.6755 -5.1774 0.4603 42 1 2.5100 -1.7275 2.5266 43 1 0.9426 -2.4588 2.9867 44 1 2.3627 -5.1375 6.4442 45 1 3.8313 -4.9009 5.4677 46 1 1.9067 -7.0306 5.3092 47 1 3.3849 -6.8049 4.3474 48 1 -0.3259 -5.1255 3.0111 49 1 -0.2626 -6.0544 4.5357 50 1 -2.9770 -4.8076 4.1195 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087367620.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:13 Heat of formation + Delta-G solvation = 52.254273 kcal Electronic energy + Delta-G solvation = -32798.238108 eV Core-core repulsion = 28826.687384 eV Total energy + Delta-G solvation = -3971.550724 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -43.24996 -41.92606 -39.95796 -37.05262 -35.45116 -35.19828 -33.21620 -32.61033 -31.62101 -31.45910 -29.44107 -28.43470 -27.15479 -27.09738 -25.76272 -23.71360 -23.20339 -22.53211 -21.89141 -21.60691 -20.18573 -19.23925 -18.50603 -17.75021 -17.36449 -17.18049 -16.93187 -16.58692 -16.39275 -16.08669 -15.89680 -15.77072 -15.08066 -14.65196 -14.51613 -14.44119 -14.03401 -13.92801 -13.86814 -13.57218 -13.48921 -13.32671 -13.27411 -13.21063 -13.12043 -12.90139 -12.66647 -12.54375 -12.40493 -12.22615 -12.06637 -11.81642 -11.69424 -11.59063 -11.23311 -10.99164 -10.77139 -10.67383 -10.59782 -10.44788 -9.78972 -9.46435 -8.74456 -7.73015 -5.07043 0.64841 1.07235 1.44984 1.48175 1.53725 1.64671 1.96042 2.17832 2.53073 3.29666 3.40595 3.55836 3.59501 3.69610 3.75340 3.82453 3.92114 4.10541 4.22081 4.24533 4.33176 4.35928 4.36766 4.37681 4.51746 4.57430 4.58756 4.62444 4.62539 4.65754 4.76507 4.84751 4.86240 4.95662 4.96402 5.00087 5.09751 5.12184 5.23648 5.30272 5.31212 5.42249 5.46228 5.56307 5.58595 5.70975 5.85557 6.00007 6.16880 6.34888 6.40418 6.86031 6.93050 7.23909 7.95804 8.45660 9.30388 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010403 B = 0.004947 C = 0.003959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2690.840612 B = 5658.776984 C = 7070.069780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.039 3.961 3 N -0.526 5.526 4 C 0.218 3.782 5 N -0.436 5.436 6 C 0.064 3.936 7 C -0.087 4.087 8 C 0.615 3.385 9 O -0.577 6.577 10 N -0.599 5.599 11 C 0.104 3.896 12 C -0.066 4.066 13 H 0.104 0.896 14 C -0.096 4.096 15 H 0.110 0.890 16 C 0.120 3.880 17 C 0.168 3.832 18 H 0.070 0.930 19 C -0.123 4.123 20 C -0.096 4.096 21 C -0.104 4.104 22 H 0.076 0.924 23 C 0.206 3.794 24 N -0.604 5.604 25 C -0.228 4.228 26 H 0.078 0.922 27 C -0.057 4.057 28 N -0.944 5.944 29 Si 0.951 3.049 30 H -0.297 1.297 31 H -0.302 1.302 32 H -0.269 1.269 33 H 0.077 0.923 34 H 0.049 0.951 35 H 0.083 0.917 36 H 0.262 0.738 37 H 0.103 0.897 38 H 0.069 0.931 39 H 0.129 0.871 40 H 0.060 0.940 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.041 0.959 45 H 0.088 0.912 46 H 0.042 0.958 47 H 0.083 0.917 48 H 0.025 0.975 49 H 0.001 0.999 50 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.624 3.674 -4.456 20.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.094 4.094 3 N -0.245 5.245 4 C -0.064 4.064 5 N -0.119 5.119 6 C -0.076 4.076 7 C -0.204 4.204 8 C 0.402 3.598 9 O -0.457 6.457 10 N -0.329 5.329 11 C -0.017 4.017 12 C -0.086 4.086 13 H 0.122 0.878 14 C -0.117 4.117 15 H 0.129 0.871 16 C -0.003 4.003 17 C 0.061 3.939 18 H 0.088 0.912 19 C -0.163 4.163 20 C -0.134 4.134 21 C -0.124 4.124 22 H 0.094 0.906 23 C 0.082 3.918 24 N -0.328 5.328 25 C -0.358 4.358 26 H 0.096 0.904 27 C -0.251 4.251 28 N -0.594 5.594 29 Si 0.782 3.218 30 H -0.224 1.224 31 H -0.230 1.230 32 H -0.193 1.193 33 H 0.095 0.905 34 H 0.068 0.932 35 H 0.102 0.898 36 H 0.277 0.723 37 H 0.121 0.879 38 H 0.088 0.912 39 H 0.147 0.853 40 H 0.078 0.922 41 H 0.093 0.907 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.060 0.940 45 H 0.107 0.893 46 H 0.061 0.939 47 H 0.101 0.899 48 H 0.043 0.957 49 H 0.019 0.981 50 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 19.199 4.095 -5.094 20.281 hybrid contribution -1.669 -0.424 0.305 1.749 sum 17.529 3.672 -4.789 18.539 Atomic orbital electron populations 1.20080 0.87662 1.02559 1.02683 1.20953 0.96693 0.87621 1.04125 1.69973 1.01916 1.30131 1.22469 1.25921 0.97388 0.81787 1.01295 1.45474 1.05485 1.08243 1.52677 1.22471 0.83566 0.95668 1.05934 1.20342 0.86693 0.93541 1.19840 1.16653 0.77353 0.83704 0.82072 1.90787 1.53346 1.69359 1.32208 1.48991 1.66593 1.11413 1.05903 1.22701 1.00156 0.80105 0.98782 1.21942 0.97820 0.95602 0.93198 0.87799 1.22633 0.99922 0.93177 0.95937 0.87148 1.22488 1.01304 0.97036 0.79438 1.21008 0.83049 0.96705 0.93166 0.91212 1.22163 1.00532 0.95271 0.98291 1.21324 0.99344 0.97202 0.95507 1.21656 0.96222 0.97912 0.96576 0.90590 1.20839 0.91106 0.85944 0.93927 1.44699 1.00510 1.23511 1.64087 1.19516 0.86962 1.05502 1.23842 0.90393 1.25355 0.98745 0.98895 1.02073 1.70230 1.14169 1.25636 1.49373 0.85450 0.79561 0.79122 0.77659 1.22449 1.22958 1.19338 0.90470 0.93215 0.89803 0.72285 0.87876 0.91177 0.85257 0.92233 0.90724 0.90998 0.91727 0.94028 0.89326 0.93876 0.89851 0.95665 0.98104 0.95043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.36 10.24 71.24 0.73 -1.63 16 2 C 0.04 1.28 7.15 41.97 0.30 1.58 16 3 N -0.53 -15.40 11.20 -187.59 -2.10 -17.50 16 4 C 0.22 4.38 12.52 180.33 2.26 6.64 16 5 N -0.44 -9.53 3.17 -539.82 -1.71 -11.25 16 6 C 0.06 0.78 11.07 127.77 1.41 2.20 16 7 C -0.09 -2.76 5.54 40.01 0.22 -2.53 16 8 C 0.62 22.32 6.83 86.47 0.59 22.91 16 9 O -0.58 -24.74 17.41 -4.30 -0.07 -24.81 16 10 N -0.60 -20.63 3.31 -811.77 -2.69 -23.32 16 11 C 0.10 3.62 6.36 86.65 0.55 4.17 16 12 C -0.07 -1.87 3.10 -9.82 -0.03 -1.90 16 13 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 14 C -0.10 -2.64 3.14 -9.83 -0.03 -2.67 16 15 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 16 C 0.12 3.93 6.30 86.55 0.54 4.47 16 17 C 0.17 5.55 3.04 45.36 0.14 5.69 16 18 H 0.07 2.29 8.02 -2.39 -0.02 2.27 16 19 C -0.12 -3.43 5.91 31.07 0.18 -3.25 16 20 C -0.10 -2.65 5.65 30.59 0.17 -2.48 16 21 C -0.10 -3.37 2.89 -10.58 -0.03 -3.40 16 22 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 23 C 0.21 9.29 4.03 86.38 0.35 9.64 16 24 N -0.60 -26.78 1.99 -668.33 -1.33 -28.11 16 25 C -0.23 -11.70 9.23 84.03 0.78 -10.92 16 26 H 0.08 3.86 7.82 -2.91 -0.02 3.84 16 27 C -0.06 -3.15 5.46 84.86 0.46 -2.68 16 28 N -0.94 -54.95 9.88 21.65 0.21 -54.74 16 29 Si 0.95 45.46 29.56 68.60 2.03 47.48 16 30 H -0.30 -14.41 7.11 99.48 0.71 -13.71 16 31 H -0.30 -14.81 7.11 99.48 0.71 -14.11 16 32 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 33 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.05 1.80 7.94 -2.39 -0.02 1.78 16 35 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 36 H 0.26 2.11 8.06 -2.91 -0.02 2.09 16 37 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.07 1.12 7.80 -2.39 -0.02 1.10 16 39 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 40 H 0.06 2.55 5.35 -2.39 -0.01 2.54 16 41 H 0.07 2.49 7.93 -2.39 -0.02 2.47 16 42 H 0.07 2.14 7.39 -2.39 -0.02 2.12 16 43 H 0.06 2.75 6.32 -2.38 -0.02 2.74 16 44 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.09 1.82 8.14 -2.38 -0.02 1.80 16 46 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 48 H 0.03 1.33 4.75 -2.38 -0.01 1.31 16 49 H 0.00 0.04 7.43 -2.39 -0.02 0.02 16 50 H 0.24 13.97 8.31 -92.71 -0.77 13.20 16 Total: -1.00 -74.85 382.98 3.87 -70.97 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.94 Total: 15.45 kcal Atomic # 6 Polarization: 17.23 SS G_CDS: 8.60 Total: 25.83 kcal Atomic # 7 Polarization: -127.30 SS G_CDS: -7.62 Total: -134.92 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.07 Total: -24.81 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Total: -74.85 3.87 -70.97 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087367620.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.229 kcal (2) G-P(sol) polarization free energy of solvation -74.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds