Wall clock time and date at job start Wed Apr 1 2020 04:26:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34671 * 126.59252 * 2 1 4 4 N 1.34132 * 108.02092 * 180.02562 * 3 2 1 5 5 C 1.30499 * 109.25490 * 359.72871 * 4 3 2 6 6 N 1.35046 * 108.70061 * 0.44347 * 5 4 3 7 7 C 1.46501 * 126.39600 * 179.82510 * 6 5 4 8 8 C 1.50698 * 109.47230 * 264.68524 * 7 6 5 9 9 O 1.21283 * 119.99594 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99850 * 179.97438 * 8 7 6 11 11 C 1.48158 * 127.83215 * 180.02562 * 10 8 7 12 12 C 1.54382 * 104.58434 * 140.41412 * 11 10 8 13 13 H 1.08995 * 111.27001 * 264.03043 * 12 11 10 14 14 C 1.54170 * 104.99981 * 23.95152 * 12 11 10 15 15 H 1.08996 * 111.54374 * 239.57652 * 14 12 11 16 16 C 1.48142 * 127.83926 * 0.02562 * 10 8 7 17 17 C 1.53287 * 109.33728 * 116.49553 * 14 12 11 18 18 H 1.08997 * 110.49174 * 181.90561 * 17 14 12 19 19 C 1.53313 * 108.74346 * 60.47097 * 17 14 12 20 20 C 1.52931 * 109.59986 * 299.35293 * 19 17 14 21 21 C 1.52972 * 109.06772 * 141.55545 * 12 11 10 22 22 H 1.09008 * 110.13059 * 65.80114 * 21 12 11 23 23 C 1.53605 * 109.11690 * 305.41301 * 21 12 11 24 24 N 1.47638 * 106.81298 * 300.20152 * 23 21 12 25 25 C 1.36938 * 122.05769 * 180.02562 * 24 23 21 26 26 H 1.08001 * 119.99516 * 180.02562 * 25 24 23 27 27 C 1.38807 * 120.00421 * 0.02562 * 25 24 23 28 28 N 1.31618 * 119.99603 * 359.97438 * 27 25 24 29 29 Si 1.86797 * 120.00094 * 180.02562 * 27 25 24 30 30 H 1.48497 * 109.47654 * 89.99607 * 29 27 25 31 31 H 1.48505 * 109.47296 * 209.99961 * 29 27 25 32 32 H 1.48499 * 109.47058 * 329.99544 * 29 27 25 33 33 H 1.09005 * 109.46769 * 269.95470 * 1 2 3 34 34 H 1.08998 * 109.47226 * 29.95240 * 1 2 3 35 35 H 1.08998 * 109.47358 * 149.95725 * 1 2 3 36 36 H 1.07993 * 125.98785 * 0.04230 * 3 2 1 37 37 H 1.07998 * 125.65065 * 180.28959 * 5 4 3 38 38 H 1.08999 * 109.46984 * 144.68717 * 7 6 5 39 39 H 1.08995 * 109.47366 * 24.69277 * 7 6 5 40 40 H 1.09007 * 110.41449 * 21.63381 * 11 10 8 41 41 H 1.09004 * 110.41180 * 259.18700 * 11 10 8 42 42 H 1.09009 * 110.40356 * 100.72505 * 16 10 8 43 43 H 1.08995 * 110.40744 * 338.30341 * 16 10 8 44 44 H 1.08997 * 109.45268 * 179.31188 * 19 17 14 45 45 H 1.08999 * 109.45070 * 59.39072 * 19 17 14 46 46 H 1.09001 * 109.38361 * 240.50308 * 20 19 17 47 47 H 1.09001 * 109.29606 * 120.77005 * 20 19 17 48 48 H 1.09002 * 109.99961 * 59.55512 * 23 21 12 49 49 H 1.09001 * 110.00111 * 180.85176 * 23 21 12 50 50 H 0.97004 * 119.99633 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0813 0.0000 4 7 3.5812 0.6541 -0.0006 5 6 3.5968 -0.6508 0.0049 6 7 2.3229 -1.0991 -0.0007 7 6 1.8943 -2.5000 -0.0011 8 6 1.6284 -2.9436 -1.4165 9 8 1.7822 -2.1662 -2.3346 10 7 1.2206 -4.2045 -1.6621 11 6 0.9121 -4.8206 -2.9737 12 6 1.4833 -6.2515 -2.8751 13 1 2.4809 -6.3098 -3.3103 14 6 1.5256 -6.5611 -1.3654 15 1 2.5393 -6.7801 -1.0300 16 6 0.9792 -5.2888 -0.6819 17 6 0.5829 -7.7306 -1.0605 18 1 0.5726 -7.9438 0.0084 19 6 1.0514 -8.9594 -1.8485 20 6 1.0086 -8.6551 -3.3466 21 6 0.5288 -7.2200 -3.5757 22 1 0.4992 -7.0099 -4.6449 23 6 -0.8776 -7.0600 -2.9791 24 7 -0.7684 -7.3689 -1.5395 25 6 -1.8508 -7.3218 -0.7019 26 1 -1.7328 -7.5538 0.3463 27 6 -3.0994 -6.9758 -1.2000 28 7 -3.2429 -6.6926 -2.4773 29 14 -4.5756 -6.9109 -0.0572 30 1 -4.7002 -5.5457 0.5136 31 1 -5.8063 -7.2431 -0.8190 32 1 -4.3940 -7.8924 1.0423 33 1 -0.3633 -0.0008 1.0277 34 1 -0.3633 0.8904 -0.5131 35 1 -0.3634 -0.8896 -0.5145 36 1 1.9865 2.1117 0.0006 37 1 4.4818 -1.2697 0.0103 38 1 0.9833 -2.6013 0.5887 39 1 2.6787 -3.1200 0.4328 40 1 1.4020 -4.2701 -3.7770 41 1 -0.1654 -4.8517 -3.1351 42 1 -0.0879 -5.3919 -0.4844 43 1 1.5206 -5.0921 0.2434 44 1 0.3955 -9.8022 -1.6305 45 1 2.0718 -9.2095 -1.5580 46 1 0.3248 -9.3478 -3.8371 47 1 2.0073 -8.7741 -3.7670 48 1 -1.2261 -6.0362 -3.1153 49 1 -1.5671 -7.7551 -3.4582 50 1 -4.1154 -6.4504 -2.8253 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087374290.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:22 Heat of formation + Delta-G solvation = 72.074461 kcal Electronic energy + Delta-G solvation = -31984.953672 eV Core-core repulsion = 28014.262416 eV Total energy + Delta-G solvation = -3970.691256 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.13148 -40.69588 -38.87500 -35.72083 -34.03221 -33.48965 -31.96159 -31.77791 -30.63720 -29.87539 -28.11788 -26.84366 -26.41100 -25.43203 -24.05583 -22.04680 -21.45985 -21.21271 -20.79603 -20.30576 -19.12479 -17.66636 -17.29722 -16.90715 -16.12837 -15.93382 -15.53863 -15.14116 -15.08079 -14.64208 -14.39332 -14.26217 -14.14617 -13.67528 -13.24528 -13.08535 -12.97679 -12.78150 -12.68641 -12.39446 -12.30654 -12.22809 -12.13707 -11.90580 -11.60329 -11.36816 -11.20406 -11.05954 -10.79282 -10.66521 -10.59656 -10.28083 -10.24494 -9.94740 -9.93001 -9.86220 -9.42110 -9.35005 -9.29831 -8.62154 -8.40873 -8.25384 -6.97989 -5.78707 -3.16602 1.95281 2.57327 2.58430 3.16581 3.25920 3.29933 3.36351 3.38730 4.36708 4.40224 4.50269 4.68934 4.71531 4.82877 4.86900 4.97604 5.05556 5.14914 5.33349 5.35654 5.42373 5.46753 5.50399 5.60675 5.64376 5.65389 5.77009 5.79605 5.82746 5.85439 5.88801 5.99928 6.13388 6.19671 6.25506 6.31671 6.36999 6.39838 6.50346 6.58215 6.61818 6.69449 6.77093 6.86056 6.91004 7.14465 7.52334 7.57452 7.70374 7.80159 8.08539 8.15942 8.19096 9.12801 9.73530 10.27706 11.25789 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011867 B = 0.003714 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.981480 B = 7537.608460 C = 9013.376472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.009 4.009 3 C -0.034 4.034 4 N -0.493 5.493 5 C 0.186 3.814 6 N -0.440 5.440 7 C 0.090 3.910 8 C 0.513 3.487 9 O -0.535 6.535 10 N -0.610 5.610 11 C 0.106 3.894 12 C -0.079 4.079 13 H 0.067 0.933 14 C -0.109 4.109 15 H 0.071 0.929 16 C 0.101 3.899 17 C 0.178 3.822 18 H 0.069 0.931 19 C -0.128 4.128 20 C -0.100 4.100 21 C -0.114 4.114 22 H 0.066 0.934 23 C 0.197 3.803 24 N -0.597 5.597 25 C -0.240 4.240 26 H 0.075 0.925 27 C -0.003 4.003 28 N -0.919 5.919 29 Si 0.906 3.094 30 H -0.290 1.290 31 H -0.291 1.291 32 H -0.282 1.282 33 H 0.072 0.928 34 H 0.082 0.918 35 H 0.064 0.936 36 H 0.167 0.833 37 H 0.201 0.799 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.069 0.931 41 H 0.097 0.903 42 H 0.110 0.890 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.047 0.953 46 H 0.056 0.944 47 H 0.045 0.955 48 H 0.057 0.943 49 H 0.051 0.949 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.941 2.620 4.298 11.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.123 4.123 3 C -0.181 4.181 4 N -0.211 5.211 5 C -0.096 4.096 6 N -0.124 5.124 7 C -0.037 4.037 8 C 0.299 3.701 9 O -0.412 6.412 10 N -0.343 5.343 11 C -0.015 4.015 12 C -0.098 4.098 13 H 0.085 0.915 14 C -0.131 4.131 15 H 0.089 0.911 16 C -0.021 4.021 17 C 0.069 3.931 18 H 0.087 0.913 19 C -0.168 4.168 20 C -0.138 4.138 21 C -0.133 4.133 22 H 0.084 0.916 23 C 0.074 3.926 24 N -0.322 5.322 25 C -0.368 4.368 26 H 0.093 0.907 27 C -0.200 4.200 28 N -0.567 5.567 29 Si 0.736 3.264 30 H -0.217 1.217 31 H -0.217 1.217 32 H -0.208 1.208 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.083 0.917 36 H 0.184 0.816 37 H 0.218 0.782 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.087 0.913 41 H 0.114 0.886 42 H 0.128 0.872 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.066 0.934 46 H 0.075 0.925 47 H 0.063 0.937 48 H 0.075 0.925 49 H 0.069 0.931 50 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 10.485 3.572 3.763 11.699 hybrid contribution -1.485 -0.758 0.462 1.731 sum 9.000 2.814 4.226 10.333 Atomic orbital electron populations 1.20231 0.87326 1.03752 1.02430 1.21246 0.94586 0.86652 1.09842 1.21961 0.88407 0.98258 1.09482 1.70231 1.22472 1.08747 1.19656 1.24807 0.86935 0.91828 1.06036 1.44893 1.07444 1.05446 1.54578 1.21635 1.04465 0.81010 0.96599 1.20107 0.78195 0.81063 0.90733 1.90766 1.52731 1.52012 1.45711 1.48956 1.64705 1.09869 1.10809 1.22722 1.02442 0.91937 0.84447 1.21870 0.98311 0.93931 0.95713 0.91470 1.22675 0.99078 0.96470 0.94870 0.91112 1.22810 1.03939 0.84983 0.90395 1.20578 0.85583 0.90523 0.96432 0.91267 1.22020 0.99380 0.99594 0.95796 1.21329 0.99386 0.96554 0.96504 1.21808 0.98607 0.93903 0.98982 0.91601 1.21277 0.88351 1.00483 0.82530 1.44652 1.02219 1.80017 1.05266 1.19220 0.86470 1.40109 0.91044 0.90713 1.24763 0.97493 1.01608 0.96087 1.70009 1.22595 1.52605 1.11449 0.86227 0.82833 0.77636 0.79665 1.21743 1.21749 1.20780 0.90934 0.89926 0.91654 0.81571 0.78210 0.86255 0.86032 0.91278 0.88552 0.87184 0.92067 0.92128 0.93421 0.92491 0.93657 0.92541 0.93120 0.93754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.89 10.08 36.00 0.36 -0.53 16 2 C -0.01 -0.12 6.95 -81.60 -0.57 -0.69 16 3 C -0.03 -0.48 11.79 -17.81 -0.21 -0.69 16 4 N -0.49 -7.58 11.25 -14.67 -0.17 -7.74 16 5 C 0.19 2.47 12.56 -90.37 -1.13 1.34 16 6 N -0.44 -5.82 2.24 -115.28 -0.26 -6.07 16 7 C 0.09 1.02 5.26 -5.19 -0.03 0.99 16 8 C 0.51 7.88 7.98 -10.99 -0.09 7.79 16 9 O -0.54 -10.41 16.70 5.55 0.09 -10.31 16 10 N -0.61 -9.32 3.32 -169.28 -0.56 -9.88 16 11 C 0.11 1.75 6.35 -2.41 -0.02 1.73 16 12 C -0.08 -1.18 3.12 -89.30 -0.28 -1.46 16 13 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 14 C -0.11 -1.56 3.17 -89.12 -0.28 -1.84 16 15 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 16 C 0.10 1.43 6.29 -2.40 -0.02 1.42 16 17 C 0.18 2.93 3.02 -66.87 -0.20 2.73 16 18 H 0.07 1.11 8.02 -51.93 -0.42 0.70 16 19 C -0.13 -1.95 5.85 -26.60 -0.16 -2.11 16 20 C -0.10 -1.52 5.66 -26.74 -0.15 -1.67 16 21 C -0.11 -1.87 2.87 -90.30 -0.26 -2.13 16 22 H 0.07 1.04 8.14 -51.92 -0.42 0.61 16 23 C 0.20 4.13 4.01 -3.10 -0.01 4.12 16 24 N -0.60 -12.42 1.96 -163.01 -0.32 -12.74 16 25 C -0.24 -5.69 9.26 -15.06 -0.14 -5.83 16 26 H 0.08 1.72 7.81 -52.49 -0.41 1.31 16 27 C 0.00 -0.08 5.47 -17.43 -0.10 -0.17 16 28 N -0.92 -24.34 9.77 55.49 0.54 -23.79 16 29 Si 0.91 20.35 29.55 -169.99 -5.02 15.33 16 30 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 31 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 32 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.06 0.83 7.96 -51.93 -0.41 0.41 16 36 H 0.17 1.92 8.06 -52.49 -0.42 1.50 16 37 H 0.20 1.94 8.06 -52.49 -0.42 1.51 16 38 H 0.12 1.19 8.02 -51.93 -0.42 0.77 16 39 H 0.12 0.99 7.94 -51.93 -0.41 0.58 16 40 H 0.07 1.15 7.88 -51.93 -0.41 0.74 16 41 H 0.10 1.85 5.28 -51.93 -0.27 1.57 16 42 H 0.11 1.95 6.30 -51.92 -0.33 1.63 16 43 H 0.06 0.67 7.30 -51.93 -0.38 0.29 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 46 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 47 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.06 1.33 4.86 -51.93 -0.25 1.08 16 49 H 0.05 1.24 7.22 -51.93 -0.38 0.87 16 50 H 0.25 6.66 8.31 -40.82 -0.34 6.32 16 LS Contribution 382.10 15.07 5.76 5.76 Total: -1.00 -30.79 382.10 -11.08 -41.87 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -7.87 Total: 4.58 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: -3.27 Total: 2.99 kcal Atomic # 7 Polarization: -59.46 SS G_CDS: -0.76 Total: -60.23 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.09 Total: -10.31 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.79 -11.08 -41.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087374290.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.945 kcal (2) G-P(sol) polarization free energy of solvation -30.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.870 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds