Wall clock time and date at job start Wed Apr 1 2020 04:26:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34671 * 126.59252 * 2 1 4 4 N 1.34132 * 108.02092 * 180.02562 * 3 2 1 5 5 C 1.30499 * 109.25490 * 359.72871 * 4 3 2 6 6 N 1.35046 * 108.70061 * 0.44347 * 5 4 3 7 7 C 1.46501 * 126.39600 * 179.82510 * 6 5 4 8 8 C 1.50698 * 109.47230 * 264.68524 * 7 6 5 9 9 O 1.21283 * 119.99594 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99850 * 179.97438 * 8 7 6 11 11 C 1.48158 * 127.83215 * 180.02562 * 10 8 7 12 12 C 1.54382 * 104.58434 * 140.41412 * 11 10 8 13 13 H 1.08995 * 111.27001 * 264.03043 * 12 11 10 14 14 C 1.54170 * 104.99981 * 23.95152 * 12 11 10 15 15 H 1.08996 * 111.54374 * 239.57652 * 14 12 11 16 16 C 1.48142 * 127.83926 * 0.02562 * 10 8 7 17 17 C 1.53287 * 109.33728 * 116.49553 * 14 12 11 18 18 H 1.08997 * 110.49174 * 181.90561 * 17 14 12 19 19 C 1.53313 * 108.74346 * 60.47097 * 17 14 12 20 20 C 1.52931 * 109.59986 * 299.35293 * 19 17 14 21 21 C 1.52972 * 109.06772 * 141.55545 * 12 11 10 22 22 H 1.09008 * 110.13059 * 65.80114 * 21 12 11 23 23 C 1.53605 * 109.11690 * 305.41301 * 21 12 11 24 24 N 1.47638 * 106.81298 * 300.20152 * 23 21 12 25 25 C 1.36938 * 122.05769 * 180.02562 * 24 23 21 26 26 H 1.08001 * 119.99516 * 180.02562 * 25 24 23 27 27 C 1.38807 * 120.00421 * 0.02562 * 25 24 23 28 28 N 1.31618 * 119.99603 * 359.97438 * 27 25 24 29 29 Si 1.86797 * 120.00094 * 180.02562 * 27 25 24 30 30 H 1.48497 * 109.47654 * 89.99607 * 29 27 25 31 31 H 1.48505 * 109.47296 * 209.99961 * 29 27 25 32 32 H 1.48499 * 109.47058 * 329.99544 * 29 27 25 33 33 H 1.09005 * 109.46769 * 269.95470 * 1 2 3 34 34 H 1.08998 * 109.47226 * 29.95240 * 1 2 3 35 35 H 1.08998 * 109.47358 * 149.95725 * 1 2 3 36 36 H 1.07993 * 125.98785 * 0.04230 * 3 2 1 37 37 H 1.07998 * 125.65065 * 180.28959 * 5 4 3 38 38 H 1.08999 * 109.46984 * 144.68717 * 7 6 5 39 39 H 1.08995 * 109.47366 * 24.69277 * 7 6 5 40 40 H 1.09007 * 110.41449 * 21.63381 * 11 10 8 41 41 H 1.09004 * 110.41180 * 259.18700 * 11 10 8 42 42 H 1.09009 * 110.40356 * 100.72505 * 16 10 8 43 43 H 1.08995 * 110.40744 * 338.30341 * 16 10 8 44 44 H 1.08997 * 109.45268 * 179.31188 * 19 17 14 45 45 H 1.08999 * 109.45070 * 59.39072 * 19 17 14 46 46 H 1.09001 * 109.38361 * 240.50308 * 20 19 17 47 47 H 1.09001 * 109.29606 * 120.77005 * 20 19 17 48 48 H 1.09002 * 109.99961 * 59.55512 * 23 21 12 49 49 H 1.09001 * 110.00111 * 180.85176 * 23 21 12 50 50 H 0.97004 * 119.99633 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3098 1.0813 0.0000 4 7 3.5812 0.6541 -0.0006 5 6 3.5968 -0.6508 0.0049 6 7 2.3229 -1.0991 -0.0007 7 6 1.8943 -2.5000 -0.0011 8 6 1.6284 -2.9436 -1.4165 9 8 1.7822 -2.1662 -2.3346 10 7 1.2206 -4.2045 -1.6621 11 6 0.9121 -4.8206 -2.9737 12 6 1.4833 -6.2515 -2.8751 13 1 2.4809 -6.3098 -3.3103 14 6 1.5256 -6.5611 -1.3654 15 1 2.5393 -6.7801 -1.0300 16 6 0.9792 -5.2888 -0.6819 17 6 0.5829 -7.7306 -1.0605 18 1 0.5726 -7.9438 0.0084 19 6 1.0514 -8.9594 -1.8485 20 6 1.0086 -8.6551 -3.3466 21 6 0.5288 -7.2200 -3.5757 22 1 0.4992 -7.0099 -4.6449 23 6 -0.8776 -7.0600 -2.9791 24 7 -0.7684 -7.3689 -1.5395 25 6 -1.8508 -7.3218 -0.7019 26 1 -1.7328 -7.5538 0.3463 27 6 -3.0994 -6.9758 -1.2000 28 7 -3.2429 -6.6926 -2.4773 29 14 -4.5756 -6.9109 -0.0572 30 1 -4.7002 -5.5457 0.5136 31 1 -5.8063 -7.2431 -0.8190 32 1 -4.3940 -7.8924 1.0423 33 1 -0.3633 -0.0008 1.0277 34 1 -0.3633 0.8904 -0.5131 35 1 -0.3634 -0.8896 -0.5145 36 1 1.9865 2.1117 0.0006 37 1 4.4818 -1.2697 0.0103 38 1 0.9833 -2.6013 0.5887 39 1 2.6787 -3.1200 0.4328 40 1 1.4020 -4.2701 -3.7770 41 1 -0.1654 -4.8517 -3.1351 42 1 -0.0879 -5.3919 -0.4844 43 1 1.5206 -5.0921 0.2434 44 1 0.3955 -9.8022 -1.6305 45 1 2.0718 -9.2095 -1.5580 46 1 0.3248 -9.3478 -3.8371 47 1 2.0073 -8.7741 -3.7670 48 1 -1.2261 -6.0362 -3.1153 49 1 -1.5671 -7.7551 -3.4582 50 1 -4.1154 -6.4504 -2.8253 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087374290.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:26:21 Heat of formation + Delta-G solvation = 56.227290 kcal Electronic energy + Delta-G solvation = -31985.640857 eV Core-core repulsion = 28014.262416 eV Total energy + Delta-G solvation = -3971.378441 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.11968 -41.98470 -40.14744 -37.05303 -35.20415 -35.02364 -33.19819 -32.88227 -31.83945 -31.54973 -29.23223 -28.06213 -27.35830 -27.11865 -25.28061 -23.67808 -22.58331 -22.42704 -21.97607 -21.41993 -20.23064 -19.21252 -18.46423 -18.03208 -17.41739 -17.22461 -16.98624 -16.49849 -16.25122 -15.90871 -15.82061 -15.62754 -15.22060 -14.69745 -14.46861 -14.43735 -14.00658 -13.95949 -13.88364 -13.67545 -13.45849 -13.34018 -13.27608 -13.18286 -13.10661 -12.84617 -12.62598 -12.52082 -12.39558 -12.17917 -12.03006 -11.78992 -11.65296 -11.44769 -11.20194 -10.97846 -10.75849 -10.64294 -10.46783 -10.45291 -9.70820 -9.24893 -8.74516 -7.68410 -5.04843 0.94152 1.41470 1.47757 1.50273 1.56749 1.62901 2.09114 2.21573 2.55445 3.30149 3.45063 3.61608 3.68267 3.73448 3.75182 3.81124 3.87196 3.93503 4.05339 4.21563 4.29596 4.33727 4.38674 4.42059 4.49777 4.55665 4.59514 4.61954 4.66511 4.70055 4.82028 4.89299 4.95918 4.97107 4.99799 5.02127 5.12796 5.26800 5.32463 5.34779 5.39222 5.44028 5.58665 5.62148 5.73148 5.78724 5.86955 6.01332 6.20239 6.35913 6.53629 6.96696 7.09075 7.25282 7.97511 8.47999 9.33782 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011867 B = 0.003714 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.981480 B = 7537.608460 C = 9013.376472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.023 4.023 3 C -0.054 4.054 4 N -0.529 5.529 5 C 0.185 3.815 6 N -0.445 5.445 7 C 0.096 3.904 8 C 0.511 3.489 9 O -0.583 6.583 10 N -0.608 5.608 11 C 0.107 3.893 12 C -0.069 4.069 13 H 0.095 0.905 14 C -0.100 4.100 15 H 0.115 0.885 16 C 0.104 3.896 17 C 0.169 3.831 18 H 0.080 0.920 19 C -0.124 4.124 20 C -0.097 4.097 21 C -0.108 4.108 22 H 0.066 0.934 23 C 0.212 3.788 24 N -0.608 5.608 25 C -0.224 4.224 26 H 0.085 0.915 27 C -0.064 4.064 28 N -0.950 5.950 29 Si 0.957 3.043 30 H -0.293 1.293 31 H -0.308 1.308 32 H -0.269 1.269 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.046 0.954 36 H 0.180 0.820 37 H 0.234 0.766 38 H 0.136 0.864 39 H 0.167 0.833 40 H 0.061 0.939 41 H 0.058 0.942 42 H 0.070 0.930 43 H 0.108 0.892 44 H 0.041 0.959 45 H 0.087 0.913 46 H 0.039 0.961 47 H 0.078 0.922 48 H 0.022 0.978 49 H 0.002 0.998 50 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.270 1.610 6.703 14.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.137 4.137 3 C -0.200 4.200 4 N -0.247 5.247 5 C -0.097 4.097 6 N -0.129 5.129 7 C -0.030 4.030 8 C 0.300 3.700 9 O -0.464 6.464 10 N -0.340 5.340 11 C -0.016 4.016 12 C -0.088 4.088 13 H 0.113 0.887 14 C -0.121 4.121 15 H 0.133 0.867 16 C -0.018 4.018 17 C 0.062 3.938 18 H 0.098 0.902 19 C -0.163 4.163 20 C -0.135 4.135 21 C -0.127 4.127 22 H 0.085 0.915 23 C 0.087 3.913 24 N -0.332 5.332 25 C -0.354 4.354 26 H 0.103 0.897 27 C -0.256 4.256 28 N -0.600 5.600 29 Si 0.788 3.212 30 H -0.220 1.220 31 H -0.236 1.236 32 H -0.194 1.194 33 H 0.112 0.888 34 H 0.109 0.891 35 H 0.065 0.935 36 H 0.197 0.803 37 H 0.250 0.750 38 H 0.153 0.847 39 H 0.184 0.816 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.088 0.912 43 H 0.127 0.873 44 H 0.060 0.940 45 H 0.105 0.895 46 H 0.058 0.942 47 H 0.097 0.903 48 H 0.040 0.960 49 H 0.020 0.980 50 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 13.846 2.528 6.220 15.388 hybrid contribution -2.513 -0.449 -0.302 2.571 sum 11.333 2.080 5.918 12.953 Atomic orbital electron populations 1.20256 0.86194 1.03227 1.03596 1.21604 0.95498 0.86955 1.09636 1.22320 0.88436 0.99320 1.09908 1.70210 1.23181 1.10179 1.21103 1.25503 0.87932 0.91732 1.04517 1.45047 1.07424 1.06018 1.54379 1.21834 1.06836 0.80596 0.93688 1.20861 0.76905 0.80232 0.92046 1.90748 1.54792 1.53118 1.47696 1.49009 1.64265 1.10359 1.10386 1.22511 1.00134 0.93513 0.85437 1.21836 0.98638 0.91727 0.96622 0.88698 1.22660 1.00463 0.95032 0.93922 0.86735 1.22765 1.02325 0.84735 0.91985 1.20908 0.83572 0.92068 0.97238 0.90207 1.21967 1.01149 0.97996 0.95205 1.21319 1.00639 0.94603 0.96930 1.21680 0.96173 0.95906 0.98970 0.91511 1.20788 0.90346 0.97086 0.83050 1.44842 1.03725 1.79739 1.04850 1.19602 0.87139 1.36905 0.91765 0.89691 1.25388 0.99887 1.03342 0.96996 1.70260 1.21765 1.55069 1.12955 0.85388 0.79982 0.77507 0.78332 1.22017 1.23585 1.19396 0.88849 0.89103 0.93486 0.80284 0.74961 0.84658 0.81573 0.92045 0.92415 0.91177 0.87346 0.94034 0.89461 0.94219 0.90329 0.96032 0.98023 0.95290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.62 10.08 71.23 0.72 -0.90 16 2 C -0.02 -0.59 6.95 40.95 0.28 -0.30 16 3 C -0.05 -1.48 11.79 83.52 0.98 -0.49 16 4 N -0.53 -15.59 11.25 -200.31 -2.25 -17.85 16 5 C 0.18 4.47 12.56 180.26 2.26 6.74 16 6 N -0.45 -10.71 2.24 -518.63 -1.16 -11.87 16 7 C 0.10 1.83 5.26 85.63 0.45 2.28 16 8 C 0.51 14.73 7.98 87.66 0.70 15.42 16 9 O -0.58 -22.47 16.70 -3.04 -0.05 -22.52 16 10 N -0.61 -17.42 3.32 -807.87 -2.68 -20.10 16 11 C 0.11 3.50 6.35 86.53 0.55 4.05 16 12 C -0.07 -1.88 3.12 -9.94 -0.03 -1.91 16 13 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 14 C -0.10 -2.40 3.17 -9.82 -0.03 -2.43 16 15 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 16 C 0.10 2.59 6.29 86.54 0.54 3.13 16 17 C 0.17 5.04 3.02 44.93 0.14 5.17 16 18 H 0.08 2.24 8.02 -2.39 -0.02 2.22 16 19 C -0.12 -3.33 5.85 30.68 0.18 -3.15 16 20 C -0.10 -2.71 5.66 30.59 0.17 -2.54 16 21 C -0.11 -3.48 2.87 -10.59 -0.03 -3.51 16 22 H 0.07 2.12 8.14 -2.38 -0.02 2.10 16 23 C 0.21 9.29 4.01 86.36 0.35 9.63 16 24 N -0.61 -25.26 1.96 -669.63 -1.31 -26.57 16 25 C -0.22 -10.71 9.26 84.03 0.78 -9.93 16 26 H 0.09 3.81 7.81 -2.91 -0.02 3.79 16 27 C -0.06 -3.31 5.47 84.86 0.46 -2.84 16 28 N -0.95 -53.64 9.77 21.65 0.21 -53.43 16 29 Si 0.96 43.03 29.55 68.60 2.03 45.06 16 30 H -0.29 -13.09 7.11 99.48 0.71 -12.39 16 31 H -0.31 -14.60 7.11 99.48 0.71 -13.89 16 32 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 33 H 0.09 1.59 8.14 -2.38 -0.02 1.57 16 34 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.05 1.18 7.96 -2.39 -0.02 1.16 16 36 H 0.18 4.08 8.06 -2.91 -0.02 4.06 16 37 H 0.23 3.64 8.06 -2.91 -0.02 3.61 16 38 H 0.14 2.21 8.02 -2.39 -0.02 2.19 16 39 H 0.17 1.69 7.94 -2.39 -0.02 1.67 16 40 H 0.06 2.08 7.88 -2.38 -0.02 2.06 16 41 H 0.06 2.37 5.28 -2.38 -0.01 2.36 16 42 H 0.07 2.39 6.30 -2.38 -0.02 2.37 16 43 H 0.11 1.71 7.30 -2.39 -0.02 1.69 16 44 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 47 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 48 H 0.02 1.11 4.86 -2.39 -0.01 1.09 16 49 H 0.00 0.08 7.22 -2.39 -0.02 0.07 16 50 H 0.24 13.52 8.31 -92.71 -0.77 12.75 16 Total: -1.00 -73.52 382.10 4.19 -69.33 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.94 Total: 19.51 kcal Atomic # 6 Polarization: 9.96 SS G_CDS: 8.48 Total: 18.44 kcal Atomic # 7 Polarization: -122.62 SS G_CDS: -7.20 Total: -129.82 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -0.05 Total: -22.52 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -73.52 4.19 -69.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087374290.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.558 kcal (2) G-P(sol) polarization free energy of solvation -73.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds