Wall clock time and date at job start Wed Apr 1 2020 03:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39868 * 125.89484 * 2 1 4 4 C 1.35325 * 107.91737 * 179.73392 * 3 2 1 5 5 N 1.34941 * 107.74555 * 0.26206 * 4 3 2 6 6 C 1.46498 * 126.04014 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.47426 * 125.00495 * 6 5 4 8 8 O 1.21284 * 119.99983 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99898 * 180.02562 * 7 6 5 10 10 C 1.48149 * 127.83879 * 359.67865 * 9 7 6 11 11 C 1.54717 * 104.38247 * 140.33744 * 10 9 7 12 12 H 1.09000 * 111.58635 * 264.16982 * 11 10 9 13 13 C 1.54156 * 104.97629 * 24.39002 * 11 10 9 14 14 H 1.09008 * 110.87758 * 239.69794 * 13 11 10 15 15 C 1.48142 * 127.83343 * 179.97438 * 9 7 6 16 16 C 1.53032 * 110.21624 * 116.61925 * 13 11 10 17 17 H 1.09006 * 109.63764 * 180.20924 * 16 13 11 18 18 C 1.53068 * 109.16215 * 300.32938 * 16 13 11 19 19 C 1.52914 * 110.00559 * 59.26525 * 18 16 13 20 20 C 1.53335 * 109.62233 * 0.81569 * 19 18 16 21 21 H 1.09001 * 110.52483 * 177.27059 * 20 19 18 22 22 N 1.47654 * 107.93168 * 56.29590 * 20 19 18 23 23 C 1.36931 * 122.04196 * 121.17840 * 22 20 19 24 24 H 1.08002 * 120.00114 * 0.02562 * 23 22 20 25 25 C 1.38820 * 120.00143 * 179.97438 * 23 22 20 26 26 N 1.31621 * 119.99574 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00114 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.47169 * 59.99767 * 27 25 23 29 29 H 1.48498 * 109.46850 * 180.02562 * 27 25 23 30 30 H 1.48510 * 109.46900 * 300.00021 * 27 25 23 31 31 C 1.47577 * 115.91620 * 301.19760 * 22 20 19 32 32 N 1.30842 * 125.90162 * 180.21332 * 2 1 3 33 33 H 1.09007 * 109.46682 * 90.00186 * 1 2 3 34 34 H 1.08996 * 109.46710 * 209.99602 * 1 2 3 35 35 H 1.08998 * 109.47279 * 330.00079 * 1 2 3 36 36 H 1.08002 * 126.04477 * 0.02562 * 3 2 1 37 37 H 1.07997 * 126.12161 * 180.24715 * 4 3 2 38 38 H 1.08999 * 109.47277 * 245.00638 * 6 5 4 39 39 H 1.09003 * 109.46521 * 5.00443 * 6 5 4 40 40 H 1.09007 * 110.41807 * 259.14208 * 10 9 7 41 41 H 1.09002 * 110.42482 * 21.60441 * 10 9 7 42 42 H 1.08998 * 110.40672 * 338.21509 * 15 9 7 43 43 H 1.09004 * 110.39404 * 100.62396 * 15 9 7 44 44 H 1.08997 * 109.38674 * 179.43085 * 18 16 13 45 45 H 1.09005 * 109.38148 * 299.10231 * 18 16 13 46 46 H 1.09002 * 109.44642 * 120.85901 * 19 18 16 47 47 H 1.08999 * 109.45178 * 240.77088 * 19 18 16 48 48 H 0.96999 * 119.99649 * 179.97438 * 26 25 23 49 49 H 1.09001 * 109.99791 * 240.99718 * 31 22 20 50 50 H 1.09002 * 109.99345 * 119.61959 * 31 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6143 0.7154 0.0060 5 7 3.6088 -0.6340 0.0038 6 6 4.7899 -1.5007 0.0079 7 6 4.7073 -2.4569 1.1697 8 8 3.7557 -2.4179 1.9207 9 7 5.6914 -3.3547 1.3749 10 6 6.9190 -3.5572 0.5707 11 6 8.0247 -3.8275 1.6186 12 1 8.5755 -2.9195 1.8638 13 6 7.2787 -4.3692 2.8541 14 1 7.4482 -3.7306 3.7212 15 6 5.7878 -4.3669 2.4523 16 6 7.7122 -5.8077 3.1451 17 1 7.1767 -6.1823 4.0175 18 6 7.3941 -6.6836 1.9308 19 6 8.1294 -6.1561 0.6982 20 6 8.9653 -4.9295 1.0830 21 1 9.5338 -4.5701 0.2252 22 7 9.8741 -5.3240 2.1778 23 6 11.2349 -5.2216 2.0649 24 1 11.6742 -4.8423 1.1541 25 6 12.0498 -5.6044 3.1215 26 7 11.5144 -6.0662 4.2317 27 14 13.9062 -5.4641 2.9677 28 1 14.2769 -4.0470 2.7238 29 1 14.5438 -5.9340 4.2239 30 1 14.3735 -6.3004 1.8330 31 6 9.2263 -5.8358 3.4010 32 7 2.2743 -1.0598 -0.0039 33 1 -0.3633 0.0000 -1.0278 34 1 -0.3632 -0.8900 0.5138 35 1 -0.3634 0.8900 0.5138 36 1 1.9923 2.1599 0.0004 37 1 4.4891 1.3487 0.0113 38 1 4.8304 -2.0642 -0.9242 39 1 5.6880 -0.8903 0.1028 40 1 6.8024 -4.4148 -0.0920 41 1 7.1496 -2.6600 -0.0039 42 1 5.1662 -4.0798 3.3003 43 1 5.4934 -5.3479 2.0792 44 1 7.7108 -7.7073 2.1302 45 1 6.3201 -6.6686 1.7453 46 1 8.7852 -6.9336 0.3064 47 1 7.4036 -5.8755 -0.0650 48 1 12.0839 -6.3340 4.9699 49 1 9.4728 -5.1966 4.2488 50 1 9.5524 -6.8575 3.5960 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087390515.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:52 Heat of formation + Delta-G solvation = 93.710087 kcal Electronic energy + Delta-G solvation = -31015.658891 eV Core-core repulsion = 27045.905826 eV Total energy + Delta-G solvation = -3969.753065 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.37323 -40.77474 -38.88859 -35.84952 -34.05584 -33.29423 -31.78301 -30.92543 -30.19623 -29.95392 -29.46651 -27.67228 -26.19503 -25.37292 -23.68860 -22.06214 -21.34351 -21.10947 -20.77800 -20.16993 -19.30459 -17.50036 -17.35350 -16.96936 -16.50515 -15.85630 -15.60575 -15.20284 -14.86155 -14.73167 -14.44511 -14.17991 -13.91984 -13.77081 -13.54079 -13.20162 -12.90179 -12.85074 -12.48973 -12.38480 -12.23065 -12.19919 -12.15773 -12.10004 -11.55805 -11.35581 -11.18866 -10.97462 -10.86234 -10.62546 -10.61299 -10.47742 -10.25099 -10.09753 -9.81325 -9.73441 -9.38474 -9.28422 -9.24880 -8.67812 -8.60684 -8.53794 -6.90791 -5.70718 -3.08180 1.73835 2.21835 2.50849 2.71044 2.95778 3.36354 3.41293 3.42657 4.17928 4.38531 4.43669 4.61363 4.73877 4.79607 4.81015 4.93904 5.06306 5.11370 5.27136 5.33562 5.41291 5.45418 5.46260 5.49938 5.51429 5.63384 5.67773 5.70543 5.71090 5.72116 5.91846 5.95988 6.00666 6.06078 6.09059 6.13976 6.26924 6.41383 6.45691 6.57076 6.62494 6.71313 6.77534 6.82196 6.86793 6.95091 7.52848 7.58466 7.65605 7.65881 7.86519 8.07946 8.27464 9.20963 9.81885 10.35500 11.34281 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.024263 B = 0.002381 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.733958 B =11754.921051 C =12253.203121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.061 3.939 3 C -0.270 4.270 4 C 0.054 3.946 5 N -0.362 5.362 6 C 0.121 3.879 7 C 0.519 3.481 8 O -0.519 6.519 9 N -0.619 5.619 10 C 0.093 3.907 11 C -0.106 4.106 12 H 0.081 0.919 13 C -0.079 4.079 14 H 0.075 0.925 15 C 0.104 3.896 16 C -0.110 4.110 17 H 0.066 0.934 18 C -0.106 4.106 19 C -0.133 4.133 20 C 0.181 3.819 21 H 0.068 0.932 22 N -0.599 5.599 23 C -0.237 4.237 24 H 0.074 0.926 25 C -0.007 4.007 26 N -0.922 5.922 27 Si 0.909 3.091 28 H -0.286 1.286 29 H -0.291 1.291 30 H -0.286 1.286 31 C 0.203 3.797 32 N -0.265 5.265 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.146 0.854 37 H 0.173 0.827 38 H 0.113 0.887 39 H 0.124 0.876 40 H 0.086 0.914 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.057 0.943 45 H 0.049 0.951 46 H 0.061 0.939 47 H 0.051 0.949 48 H 0.252 0.748 49 H 0.049 0.951 50 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.786 9.693 -9.857 20.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.106 4.106 3 C -0.299 4.299 4 C -0.091 4.091 5 N -0.144 5.144 6 C -0.004 4.004 7 C 0.305 3.695 8 O -0.394 6.394 9 N -0.354 5.354 10 C -0.030 4.030 11 C -0.127 4.127 12 H 0.100 0.900 13 C -0.098 4.098 14 H 0.094 0.906 15 C -0.018 4.018 16 C -0.129 4.129 17 H 0.084 0.916 18 C -0.144 4.144 19 C -0.173 4.173 20 C 0.072 3.928 21 H 0.087 0.913 22 N -0.322 5.322 23 C -0.366 4.366 24 H 0.092 0.908 25 C -0.203 4.203 26 N -0.570 5.570 27 Si 0.740 3.260 28 H -0.213 1.213 29 H -0.217 1.217 30 H -0.213 1.213 31 C 0.079 3.921 32 N -0.087 5.087 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.094 0.906 36 H 0.164 0.836 37 H 0.190 0.810 38 H 0.131 0.869 39 H 0.142 0.858 40 H 0.104 0.896 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.098 0.902 44 H 0.076 0.924 45 H 0.068 0.932 46 H 0.080 0.920 47 H 0.070 0.930 48 H 0.062 0.938 49 H 0.067 0.933 50 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.060 8.369 -9.299 19.579 hybrid contribution 1.314 0.976 0.064 1.638 sum -13.746 9.345 -9.236 19.015 Atomic orbital electron populations 1.20136 0.86829 1.03221 1.02642 1.22404 0.97027 0.90889 1.00297 1.21347 0.91591 0.99679 1.17305 1.22532 0.99877 0.84480 1.02230 1.48004 1.04950 1.04210 1.57257 1.21442 0.85839 0.93636 0.99522 1.20013 0.82038 0.81088 0.86402 1.90781 1.31571 1.70254 1.46812 1.49014 1.21284 1.34507 1.30574 1.22990 0.83661 1.01521 0.94827 1.22996 0.95208 1.00509 0.94030 0.90024 1.21936 0.91976 0.97886 0.98011 0.90632 1.22739 0.97690 0.91186 0.90149 1.21816 1.01062 0.92929 0.97134 0.91582 1.21485 0.98209 0.99204 0.95463 1.22165 0.98598 0.99713 0.96775 1.20731 0.89875 0.90777 0.91430 0.91346 1.44575 1.01496 1.74353 1.11776 1.19212 0.81150 1.36678 0.99556 0.90790 1.24798 0.97970 1.01284 0.96283 1.70012 1.33018 1.49106 1.04842 0.86248 0.85360 0.77666 0.76738 1.21287 1.21699 1.21263 1.21093 0.83480 0.99330 0.88178 1.77455 0.85923 1.22400 1.22936 0.90781 0.90987 0.90610 0.83595 0.80954 0.86936 0.85803 0.89644 0.91078 0.90773 0.90197 0.92434 0.93206 0.92041 0.93039 0.93769 0.93300 0.92948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.45 36.01 0.38 -0.23 16 2 C 0.06 0.76 7.22 -82.40 -0.59 0.17 16 3 C -0.27 -2.86 10.74 -40.01 -0.43 -3.29 16 4 C 0.05 0.55 11.45 -17.22 -0.20 0.35 16 5 N -0.36 -4.59 3.40 -62.55 -0.21 -4.80 16 6 C 0.12 1.26 5.96 -5.20 -0.03 1.22 16 7 C 0.52 7.44 7.94 -10.99 -0.09 7.35 16 8 O -0.52 -9.79 15.98 5.55 0.09 -9.70 16 9 N -0.62 -8.26 3.31 -169.09 -0.56 -8.83 16 10 C 0.09 1.07 6.24 -2.23 -0.01 1.06 16 11 C -0.11 -1.60 3.43 -88.34 -0.30 -1.90 16 12 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 13 C -0.08 -1.24 3.10 -89.26 -0.28 -1.52 16 14 H 0.08 1.29 8.14 -51.92 -0.42 0.87 16 15 C 0.10 1.50 6.34 -2.40 -0.02 1.48 16 16 C -0.11 -1.90 2.87 -90.27 -0.26 -2.16 16 17 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 18 C -0.11 -1.66 5.30 -26.74 -0.14 -1.80 16 19 C -0.13 -2.07 5.53 -26.60 -0.15 -2.22 16 20 C 0.18 3.16 3.22 -66.35 -0.21 2.95 16 21 H 0.07 1.17 7.99 -51.93 -0.42 0.75 16 22 N -0.60 -13.62 2.87 -162.51 -0.47 -14.08 16 23 C -0.24 -6.09 9.99 -15.06 -0.15 -6.24 16 24 H 0.07 1.83 7.79 -52.49 -0.41 1.42 16 25 C -0.01 -0.20 5.47 -17.43 -0.10 -0.29 16 26 N -0.92 -25.78 9.76 55.49 0.54 -25.24 16 27 Si 0.91 21.27 29.55 -169.99 -5.02 16.25 16 28 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 29 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 30 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 31 C 0.20 4.58 4.36 -3.15 -0.01 4.57 16 32 N -0.27 -4.00 11.64 33.67 0.39 -3.60 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.17 1.09 8.06 -52.49 -0.42 0.66 16 38 H 0.11 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.12 0.86 7.89 -51.93 -0.41 0.45 16 40 H 0.09 0.94 5.27 -51.93 -0.27 0.66 16 41 H 0.07 0.62 7.31 -51.93 -0.38 0.24 16 42 H 0.07 1.15 7.88 -51.93 -0.41 0.74 16 43 H 0.08 1.11 5.30 -51.93 -0.28 0.84 16 44 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.05 0.69 5.79 -51.93 -0.30 0.39 16 46 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 47 H 0.05 0.66 5.72 -51.93 -0.30 0.36 16 48 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 49 H 0.05 1.25 7.25 -51.93 -0.38 0.88 16 50 H 0.05 1.34 7.21 -51.93 -0.37 0.97 16 LS Contribution 380.54 15.07 5.73 5.73 Total: -1.00 -33.73 380.54 -9.80 -43.54 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -7.70 Total: 1.24 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -2.59 Total: -0.50 kcal Atomic # 7 Polarization: -56.25 SS G_CDS: -0.31 Total: -56.55 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.73 -9.80 -43.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087390515.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.245 kcal (2) G-P(sol) polarization free energy of solvation -33.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds