Wall clock time and date at job start Wed Apr 1 2020 03:55:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39868 * 125.89484 * 2 1 4 4 C 1.35325 * 107.91737 * 179.73392 * 3 2 1 5 5 N 1.34941 * 107.74555 * 0.26206 * 4 3 2 6 6 C 1.46498 * 126.04014 * 179.97438 * 5 4 3 7 7 C 1.50697 * 109.47426 * 125.00495 * 6 5 4 8 8 O 1.21284 * 119.99983 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99898 * 180.02562 * 7 6 5 10 10 C 1.48149 * 127.83879 * 359.67865 * 9 7 6 11 11 C 1.54717 * 104.38247 * 140.33744 * 10 9 7 12 12 H 1.09000 * 111.58635 * 264.16982 * 11 10 9 13 13 C 1.54156 * 104.97629 * 24.39002 * 11 10 9 14 14 H 1.09008 * 110.87758 * 239.69794 * 13 11 10 15 15 C 1.48142 * 127.83343 * 179.97438 * 9 7 6 16 16 C 1.53032 * 110.21624 * 116.61925 * 13 11 10 17 17 H 1.09006 * 109.63764 * 180.20924 * 16 13 11 18 18 C 1.53068 * 109.16215 * 300.32938 * 16 13 11 19 19 C 1.52914 * 110.00559 * 59.26525 * 18 16 13 20 20 C 1.53335 * 109.62233 * 0.81569 * 19 18 16 21 21 H 1.09001 * 110.52483 * 177.27059 * 20 19 18 22 22 N 1.47654 * 107.93168 * 56.29590 * 20 19 18 23 23 C 1.36931 * 122.04196 * 121.17840 * 22 20 19 24 24 H 1.08002 * 120.00114 * 0.02562 * 23 22 20 25 25 C 1.38820 * 120.00143 * 179.97438 * 23 22 20 26 26 N 1.31621 * 119.99574 * 0.02562 * 25 23 22 27 27 Si 1.86798 * 120.00114 * 180.02562 * 25 23 22 28 28 H 1.48496 * 109.47169 * 59.99767 * 27 25 23 29 29 H 1.48498 * 109.46850 * 180.02562 * 27 25 23 30 30 H 1.48510 * 109.46900 * 300.00021 * 27 25 23 31 31 C 1.47577 * 115.91620 * 301.19760 * 22 20 19 32 32 N 1.30842 * 125.90162 * 180.21332 * 2 1 3 33 33 H 1.09007 * 109.46682 * 90.00186 * 1 2 3 34 34 H 1.08996 * 109.46710 * 209.99602 * 1 2 3 35 35 H 1.08998 * 109.47279 * 330.00079 * 1 2 3 36 36 H 1.08002 * 126.04477 * 0.02562 * 3 2 1 37 37 H 1.07997 * 126.12161 * 180.24715 * 4 3 2 38 38 H 1.08999 * 109.47277 * 245.00638 * 6 5 4 39 39 H 1.09003 * 109.46521 * 5.00443 * 6 5 4 40 40 H 1.09007 * 110.41807 * 259.14208 * 10 9 7 41 41 H 1.09002 * 110.42482 * 21.60441 * 10 9 7 42 42 H 1.08998 * 110.40672 * 338.21509 * 15 9 7 43 43 H 1.09004 * 110.39404 * 100.62396 * 15 9 7 44 44 H 1.08997 * 109.38674 * 179.43085 * 18 16 13 45 45 H 1.09005 * 109.38148 * 299.10231 * 18 16 13 46 46 H 1.09002 * 109.44642 * 120.85901 * 19 18 16 47 47 H 1.08999 * 109.45178 * 240.77088 * 19 18 16 48 48 H 0.96999 * 119.99649 * 179.97438 * 26 25 23 49 49 H 1.09001 * 109.99791 * 240.99718 * 31 22 20 50 50 H 1.09002 * 109.99345 * 119.61959 * 31 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6143 0.7154 0.0060 5 7 3.6088 -0.6340 0.0038 6 6 4.7899 -1.5007 0.0079 7 6 4.7073 -2.4569 1.1697 8 8 3.7557 -2.4179 1.9207 9 7 5.6914 -3.3547 1.3749 10 6 6.9190 -3.5572 0.5707 11 6 8.0247 -3.8275 1.6186 12 1 8.5755 -2.9195 1.8638 13 6 7.2787 -4.3692 2.8541 14 1 7.4482 -3.7306 3.7212 15 6 5.7878 -4.3669 2.4523 16 6 7.7122 -5.8077 3.1451 17 1 7.1767 -6.1823 4.0175 18 6 7.3941 -6.6836 1.9308 19 6 8.1294 -6.1561 0.6982 20 6 8.9653 -4.9295 1.0830 21 1 9.5338 -4.5701 0.2252 22 7 9.8741 -5.3240 2.1778 23 6 11.2349 -5.2216 2.0649 24 1 11.6742 -4.8423 1.1541 25 6 12.0498 -5.6044 3.1215 26 7 11.5144 -6.0662 4.2317 27 14 13.9062 -5.4641 2.9677 28 1 14.2769 -4.0470 2.7238 29 1 14.5438 -5.9340 4.2239 30 1 14.3735 -6.3004 1.8330 31 6 9.2263 -5.8358 3.4010 32 7 2.2743 -1.0598 -0.0039 33 1 -0.3633 0.0000 -1.0278 34 1 -0.3632 -0.8900 0.5138 35 1 -0.3634 0.8900 0.5138 36 1 1.9923 2.1599 0.0004 37 1 4.4891 1.3487 0.0113 38 1 4.8304 -2.0642 -0.9242 39 1 5.6880 -0.8903 0.1028 40 1 6.8024 -4.4148 -0.0920 41 1 7.1496 -2.6600 -0.0039 42 1 5.1662 -4.0798 3.3003 43 1 5.4934 -5.3479 2.0792 44 1 7.7108 -7.7073 2.1302 45 1 6.3201 -6.6686 1.7453 46 1 8.7852 -6.9336 0.3064 47 1 7.4036 -5.8755 -0.0650 48 1 12.0839 -6.3340 4.9699 49 1 9.4728 -5.1966 4.2488 50 1 9.5524 -6.8575 3.5960 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087390515.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:55:51 Heat of formation + Delta-G solvation = 72.672514 kcal Electronic energy + Delta-G solvation = -31016.571149 eV Core-core repulsion = 27045.905826 eV Total energy + Delta-G solvation = -3970.665323 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.27858 -41.94767 -40.07471 -37.21352 -35.06288 -34.81044 -33.22021 -31.95740 -31.67230 -31.13237 -30.33242 -28.96614 -27.16733 -26.94564 -24.93895 -23.65024 -22.49854 -22.27706 -21.97898 -21.07582 -20.26968 -19.15599 -18.35040 -18.03626 -17.70201 -17.18426 -16.82249 -16.49160 -16.39685 -15.91966 -15.66837 -15.41299 -14.98016 -14.72212 -14.50173 -14.16117 -14.13443 -13.98271 -13.74186 -13.67626 -13.61176 -13.27164 -13.00989 -12.97642 -12.88005 -12.84142 -12.80034 -12.55384 -12.34439 -12.18965 -12.08378 -11.89282 -11.75114 -11.43707 -11.15744 -11.11193 -10.82927 -10.69969 -10.46897 -10.11664 -9.73046 -9.45414 -8.80147 -7.71880 -5.09838 0.93905 1.47196 1.47954 1.48641 1.49961 1.55809 1.92469 1.98702 2.53840 3.26140 3.40064 3.53617 3.65952 3.70365 3.81948 3.85471 4.00987 4.07853 4.13633 4.14570 4.22885 4.29667 4.30897 4.45154 4.45810 4.52007 4.63075 4.68518 4.77234 4.82565 4.83976 4.85500 4.91290 4.95764 5.01428 5.03874 5.07995 5.13861 5.25620 5.27891 5.39025 5.45562 5.53980 5.57703 5.65786 5.79659 5.80552 5.92676 6.12153 6.31855 6.50240 6.84572 7.03711 7.21369 7.93498 8.43681 9.30892 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.024263 B = 0.002381 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.733958 B =11754.921051 C =12253.203121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.045 3.955 3 C -0.284 4.284 4 C 0.056 3.944 5 N -0.375 5.375 6 C 0.122 3.878 7 C 0.515 3.485 8 O -0.573 6.573 9 N -0.616 5.616 10 C 0.103 3.897 11 C -0.100 4.100 12 H 0.070 0.930 13 C -0.075 4.075 14 H 0.053 0.947 15 C 0.113 3.887 16 C -0.102 4.102 17 H 0.069 0.931 18 C -0.102 4.102 19 C -0.127 4.127 20 C 0.172 3.828 21 H 0.079 0.921 22 N -0.616 5.616 23 C -0.236 4.236 24 H 0.085 0.915 25 C -0.071 4.071 26 N -0.953 5.953 27 Si 0.969 3.031 28 H -0.278 1.278 29 H -0.303 1.303 30 H -0.279 1.279 31 C 0.217 3.783 32 N -0.323 5.323 33 H 0.089 0.911 34 H 0.059 0.941 35 H 0.095 0.905 36 H 0.170 0.830 37 H 0.213 0.787 38 H 0.138 0.862 39 H 0.165 0.835 40 H 0.104 0.896 41 H 0.113 0.887 42 H 0.058 0.942 43 H 0.092 0.908 44 H 0.044 0.956 45 H 0.080 0.920 46 H 0.046 0.954 47 H 0.094 0.906 48 H 0.241 0.759 49 H 0.005 0.995 50 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.564 11.662 -13.217 23.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.122 4.122 3 C -0.313 4.313 4 C -0.088 4.088 5 N -0.158 5.158 6 C -0.003 4.003 7 C 0.303 3.697 8 O -0.451 6.451 9 N -0.349 5.349 10 C -0.018 4.018 11 C -0.121 4.121 12 H 0.088 0.912 13 C -0.095 4.095 14 H 0.072 0.928 15 C -0.010 4.010 16 C -0.122 4.122 17 H 0.087 0.913 18 C -0.140 4.140 19 C -0.166 4.166 20 C 0.065 3.935 21 H 0.097 0.903 22 N -0.339 5.339 23 C -0.366 4.366 24 H 0.103 0.897 25 C -0.263 4.263 26 N -0.604 5.604 27 Si 0.799 3.201 28 H -0.205 1.205 29 H -0.230 1.230 30 H -0.205 1.205 31 C 0.092 3.908 32 N -0.146 5.146 33 H 0.107 0.893 34 H 0.078 0.922 35 H 0.114 0.886 36 H 0.187 0.813 37 H 0.230 0.770 38 H 0.156 0.844 39 H 0.183 0.817 40 H 0.121 0.879 41 H 0.131 0.869 42 H 0.076 0.924 43 H 0.110 0.890 44 H 0.063 0.937 45 H 0.098 0.902 46 H 0.065 0.935 47 H 0.112 0.888 48 H 0.050 0.950 49 H 0.023 0.977 50 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges -15.848 10.354 -12.727 22.811 hybrid contribution 1.555 0.397 1.122 1.959 sum -14.293 10.751 -11.604 21.320 Atomic orbital electron populations 1.20239 0.85222 1.03561 1.03705 1.23025 0.98450 0.91238 0.99456 1.21751 0.91762 1.00378 1.17408 1.23251 1.01234 0.84008 1.00307 1.48220 1.04673 1.05275 1.57592 1.21735 0.86644 0.93576 0.98303 1.20795 0.81048 0.81020 0.86787 1.90765 1.33707 1.71638 1.49012 1.49025 1.21740 1.33950 1.30195 1.23031 0.80965 1.04419 0.93416 1.22809 0.95781 0.98901 0.94639 0.91191 1.21791 0.93514 0.96188 0.97966 0.92804 1.22536 0.95711 0.92263 0.90477 1.21646 0.97062 0.94870 0.98600 0.91262 1.21464 1.00060 0.97913 0.94533 1.22095 0.98887 0.98117 0.97454 1.21072 0.89875 0.92334 0.90172 0.90291 1.44845 1.01494 1.74429 1.13149 1.19659 0.82888 1.34639 0.99374 0.89747 1.25569 1.01850 1.02440 0.96479 1.70276 1.33658 1.51019 1.05406 0.85287 0.80953 0.77819 0.76088 1.20458 1.23014 1.20486 1.20603 0.87086 0.95795 0.87340 1.77369 0.87575 1.24270 1.25339 0.89293 0.92215 0.88640 0.81302 0.76991 0.84434 0.81739 0.87869 0.86853 0.92351 0.89011 0.93719 0.90191 0.93524 0.88814 0.94986 0.97708 0.97153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.14 10.45 71.24 0.74 -0.39 16 2 C 0.05 1.07 7.22 43.10 0.31 1.38 16 3 C -0.28 -5.33 10.74 21.99 0.24 -5.09 16 4 C 0.06 0.97 11.45 83.54 0.96 1.92 16 5 N -0.38 -8.47 3.40 -351.80 -1.20 -9.67 16 6 C 0.12 2.01 5.96 85.63 0.51 2.52 16 7 C 0.52 13.38 7.94 87.66 0.70 14.08 16 8 O -0.57 -21.17 15.98 -3.04 -0.05 -21.22 16 9 N -0.62 -14.38 3.31 -807.25 -2.67 -17.05 16 10 C 0.10 1.87 6.24 86.65 0.54 2.41 16 11 C -0.10 -2.77 3.43 -9.32 -0.03 -2.81 16 12 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 13 C -0.07 -2.32 3.10 -9.91 -0.03 -2.35 16 14 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 15 C 0.11 3.04 6.34 86.54 0.55 3.59 16 16 C -0.10 -3.58 2.87 -10.56 -0.03 -3.61 16 17 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 18 C -0.10 -3.03 5.30 30.59 0.16 -2.87 16 19 C -0.13 -3.56 5.53 30.68 0.17 -3.39 16 20 C 0.17 5.66 3.22 45.38 0.15 5.80 16 21 H 0.08 2.44 7.99 -2.39 -0.02 2.42 16 22 N -0.62 -28.31 2.87 -668.06 -1.92 -30.23 16 23 C -0.24 -12.23 9.99 84.04 0.84 -11.39 16 24 H 0.08 4.10 7.79 -2.91 -0.02 4.08 16 25 C -0.07 -3.91 5.47 84.86 0.46 -3.45 16 26 N -0.95 -56.30 9.76 21.65 0.21 -56.09 16 27 Si 0.97 44.67 29.55 68.60 2.03 46.70 16 28 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 29 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 30 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 31 C 0.22 10.28 4.36 86.37 0.38 10.66 16 32 N -0.32 -9.40 11.64 -47.38 -0.55 -9.95 16 33 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 34 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16 37 H 0.21 1.62 8.06 -2.91 -0.02 1.60 16 38 H 0.14 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.17 1.30 7.89 -2.39 -0.02 1.28 16 40 H 0.10 1.59 5.27 -2.38 -0.01 1.57 16 41 H 0.11 1.21 7.31 -2.39 -0.02 1.19 16 42 H 0.06 1.78 7.88 -2.39 -0.02 1.76 16 43 H 0.09 2.28 5.30 -2.38 -0.01 2.27 16 44 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.08 1.92 5.79 -2.38 -0.01 1.91 16 46 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 47 H 0.09 1.89 5.72 -2.39 -0.01 1.87 16 48 H 0.24 14.10 8.31 -92.71 -0.77 13.33 16 49 H 0.00 0.26 7.25 -2.39 -0.02 0.24 16 50 H 0.01 0.57 7.21 -2.39 -0.02 0.55 16 Total: -1.00 -80.63 380.54 3.40 -77.23 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 0.94 Total: 13.26 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: 6.61 Total: 7.01 kcal Atomic # 7 Polarization: -116.86 SS G_CDS: -6.13 Total: -122.99 kcal Atomic # 8 Polarization: -21.17 SS G_CDS: -0.05 Total: -21.22 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -80.63 3.40 -77.23 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087390515.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.903 kcal (2) G-P(sol) polarization free energy of solvation -80.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds