Wall clock time and date at job start Wed Apr 1 2020 03:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35316 * 126.12564 * 2 1 4 4 C 1.39869 * 107.92252 * 180.02562 * 3 2 1 5 5 N 1.30843 * 108.19810 * 359.74350 * 4 3 2 6 6 N 1.34948 * 126.12956 * 180.02562 * 2 1 3 7 7 C 1.46499 * 126.03628 * 359.95102 * 6 2 1 8 8 C 1.50706 * 109.46637 * 90.00005 * 7 6 2 9 9 O 1.21274 * 119.99953 * 0.02562 * 8 7 6 10 10 N 1.34785 * 119.99517 * 179.97438 * 8 7 6 11 11 C 1.48161 * 127.83911 * 0.04915 * 10 8 7 12 12 C 1.54583 * 104.84551 * 139.84282 * 11 10 8 13 13 H 1.08998 * 111.93829 * 263.70225 * 12 11 10 14 14 C 1.55266 * 104.36426 * 24.66372 * 12 11 10 15 15 H 1.08996 * 111.04873 * 239.12780 * 14 12 11 16 16 C 1.48139 * 127.83133 * 180.02562 * 10 8 7 17 17 C 1.53028 * 109.85645 * 116.17166 * 14 12 11 18 18 H 1.09001 * 109.63274 * 180.25900 * 17 14 12 19 19 C 1.53040 * 109.21412 * 300.40092 * 17 14 12 20 20 C 1.52931 * 110.01666 * 59.32924 * 19 17 14 21 21 C 1.53230 * 108.90025 * 140.75907 * 12 11 10 22 22 H 1.08999 * 110.49628 * 68.61606 * 21 12 11 23 23 N 1.47696 * 108.05155 * 189.62113 * 21 12 11 24 24 C 1.36943 * 122.06736 * 239.29058 * 23 21 12 25 25 H 1.08002 * 119.99788 * 359.97438 * 24 23 21 26 26 C 1.38811 * 119.99622 * 180.27816 * 24 23 21 27 27 N 1.31614 * 120.00467 * 359.72375 * 26 24 23 28 28 Si 1.86801 * 119.99700 * 179.72266 * 26 24 23 29 29 H 1.48501 * 109.46896 * 89.99850 * 28 26 24 30 30 H 1.48499 * 109.47039 * 210.00011 * 28 26 24 31 31 H 1.48501 * 109.47275 * 329.99811 * 28 26 24 32 32 C 1.47637 * 115.86361 * 59.56263 * 23 21 12 33 33 H 1.09002 * 109.47456 * 269.97173 * 1 2 3 34 34 H 1.09003 * 109.47135 * 29.97279 * 1 2 3 35 35 H 1.08998 * 109.47471 * 149.97263 * 1 2 3 36 36 H 1.08004 * 126.04428 * 0.02610 * 3 2 1 37 37 H 1.08001 * 125.90310 * 180.02562 * 4 3 2 38 38 H 1.09002 * 109.47445 * 330.01013 * 7 6 2 39 39 H 1.08999 * 109.47379 * 210.00132 * 7 6 2 40 40 H 1.09003 * 110.42220 * 259.04013 * 11 10 8 41 41 H 1.09011 * 110.42047 * 21.38486 * 11 10 8 42 42 H 1.09007 * 110.39249 * 100.65148 * 16 10 8 43 43 H 1.09000 * 110.49570 * 338.29512 * 16 10 8 44 44 H 1.08995 * 109.38615 * 299.15645 * 19 17 14 45 45 H 1.09004 * 109.37599 * 179.49292 * 19 17 14 46 46 H 1.08999 * 109.45247 * 240.65935 * 20 19 17 47 47 H 1.08994 * 109.45836 * 120.72742 * 20 19 17 48 48 H 0.96995 * 120.00147 * 180.02562 * 27 26 24 49 49 H 1.08994 * 109.99755 * 119.21098 * 32 23 21 50 50 H 1.08999 * 109.99522 * 240.59399 * 32 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3047 1.0930 0.0000 4 6 3.6334 0.6561 -0.0006 5 7 3.6333 -0.6524 0.0046 6 7 2.3026 -1.0900 -0.0005 7 6 1.8539 -2.4846 -0.0001 8 6 1.6991 -2.9627 -1.4209 9 8 1.9403 -2.2126 -2.3428 10 7 1.2936 -4.2244 -1.6668 11 6 0.9548 -5.2784 -0.6822 12 6 -0.2854 -5.9878 -1.2724 13 1 -1.2142 -5.5977 -0.8562 14 6 -0.1873 -5.7277 -2.8000 15 1 -1.0678 -5.1987 -3.1644 16 6 1.0852 -4.8715 -2.9830 17 6 -0.0031 -7.0533 -3.5422 18 1 0.0699 -6.8661 -4.6135 19 6 1.2772 -7.7322 -3.0503 20 6 1.1894 -7.9871 -1.5449 21 6 -0.1634 -7.4939 -1.0183 22 1 -0.2609 -7.7106 0.0455 23 7 -1.2268 -8.1749 -1.7844 24 6 -2.1769 -8.9518 -1.1769 25 1 -2.1632 -9.0819 -0.1048 26 6 -3.1537 -9.5769 -1.9396 27 7 -3.1701 -9.4187 -3.2461 28 14 -4.4451 -10.6429 -1.1117 29 1 -5.6169 -9.8070 -0.7464 30 1 -4.8739 -11.7156 -2.0448 31 1 -3.8712 -11.2535 0.1143 32 6 -1.1983 -7.9713 -3.2464 33 1 -0.3634 -0.0005 1.0277 34 1 -0.3633 0.8902 -0.5134 35 1 -0.3634 -0.8897 -0.5142 36 1 1.9740 2.1211 0.0004 37 1 4.5083 1.2892 -0.0004 38 1 0.8957 -2.5579 0.5142 39 1 2.5902 -3.1030 0.5133 40 1 1.7831 -5.9787 -0.5745 41 1 0.7066 -4.8331 0.2813 42 1 1.9365 -5.5044 -3.2341 43 1 0.9297 -4.1202 -3.7573 44 1 2.1314 -7.0882 -3.2589 45 1 1.4062 -8.6812 -3.5709 46 1 1.9929 -7.4520 -1.0387 47 1 1.2869 -9.0552 -1.3512 48 1 -3.8529 -9.8553 -3.7790 49 1 -1.0711 -8.9277 -3.7535 50 1 -2.1219 -7.4943 -3.5744 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087394690.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:06 Heat of formation + Delta-G solvation = 92.221144 kcal Electronic energy + Delta-G solvation = -31372.144903 eV Core-core repulsion = 27402.327272 eV Total energy + Delta-G solvation = -3969.817631 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.45618 -40.79945 -38.93640 -35.87052 -33.69135 -33.26616 -32.23394 -31.82457 -30.41803 -29.96944 -28.20099 -27.13673 -26.90775 -25.45000 -23.85756 -22.08440 -21.38798 -21.08744 -20.90359 -20.33864 -19.19675 -17.62539 -17.25702 -16.87075 -16.46783 -15.95101 -15.45285 -15.41963 -14.83700 -14.75147 -14.60864 -14.12275 -13.95386 -13.84624 -13.58663 -13.14994 -12.94989 -12.93118 -12.56572 -12.41377 -12.27245 -12.22997 -12.21084 -12.13870 -11.60347 -11.37953 -11.20194 -10.98985 -10.86841 -10.73032 -10.63341 -10.50295 -10.26420 -10.20554 -9.86214 -9.76391 -9.39905 -9.30409 -9.29087 -8.65979 -8.61438 -8.55180 -6.91882 -5.71718 -3.09119 1.65947 2.19933 2.43501 2.75495 2.98140 3.35441 3.41059 3.42925 4.23788 4.31476 4.42143 4.46012 4.73102 4.78092 4.84515 4.91871 4.99952 5.05054 5.23179 5.25178 5.32721 5.39333 5.44592 5.49603 5.51870 5.57212 5.60921 5.61856 5.69014 5.71004 5.88503 5.99582 6.01232 6.02661 6.07274 6.12144 6.24323 6.39873 6.44331 6.53467 6.61207 6.69233 6.75535 6.82369 6.86041 6.93370 7.47968 7.57966 7.59879 7.64581 7.85526 8.00107 8.26321 9.20013 9.80893 10.34516 11.33481 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020831 B = 0.002603 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.849307 B =10753.692747 C =11278.633259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.095 3.905 3 C -0.277 4.277 4 C 0.048 3.952 5 N -0.290 5.290 6 N -0.356 5.356 7 C 0.118 3.882 8 C 0.515 3.485 9 O -0.530 6.530 10 N -0.616 5.616 11 C 0.091 3.909 12 C -0.104 4.104 13 H 0.083 0.917 14 C -0.078 4.078 15 H 0.076 0.924 16 C 0.103 3.897 17 C -0.110 4.110 18 H 0.066 0.934 19 C -0.106 4.106 20 C -0.134 4.134 21 C 0.180 3.820 22 H 0.068 0.932 23 N -0.599 5.599 24 C -0.236 4.236 25 H 0.075 0.925 26 C -0.007 4.007 27 N -0.922 5.922 28 Si 0.908 3.092 29 H -0.290 1.290 30 H -0.291 1.291 31 H -0.282 1.282 32 C 0.203 3.797 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.146 0.854 37 H 0.182 0.818 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.088 0.912 41 H 0.071 0.929 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.049 0.951 45 H 0.057 0.943 46 H 0.052 0.948 47 H 0.061 0.939 48 H 0.251 0.749 49 H 0.052 0.948 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.298 14.421 6.712 18.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.031 4.031 3 C -0.306 4.306 4 C -0.138 4.138 5 N -0.110 5.110 6 N -0.138 5.138 7 C -0.007 4.007 8 C 0.301 3.699 9 O -0.406 6.406 10 N -0.350 5.350 11 C -0.032 4.032 12 C -0.126 4.126 13 H 0.102 0.898 14 C -0.098 4.098 15 H 0.095 0.905 16 C -0.019 4.019 17 C -0.130 4.130 18 H 0.084 0.916 19 C -0.144 4.144 20 C -0.173 4.173 21 C 0.071 3.929 22 H 0.086 0.914 23 N -0.323 5.323 24 C -0.365 4.365 25 H 0.093 0.907 26 C -0.203 4.203 27 N -0.570 5.570 28 Si 0.739 3.261 29 H -0.217 1.217 30 H -0.218 1.218 31 H -0.208 1.208 32 C 0.079 3.921 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.088 0.912 36 H 0.164 0.836 37 H 0.199 0.801 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.105 0.895 41 H 0.089 0.911 42 H 0.098 0.902 43 H 0.093 0.907 44 H 0.068 0.932 45 H 0.076 0.924 46 H 0.070 0.930 47 H 0.080 0.920 48 H 0.062 0.938 49 H 0.070 0.930 50 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 9.983 13.616 6.134 17.963 hybrid contribution -1.232 0.052 0.272 1.263 sum 8.751 13.668 6.406 17.448 Atomic orbital electron populations 1.20476 0.87425 1.04231 1.03189 1.21086 0.94670 0.87223 1.00166 1.21181 0.92345 0.98783 1.18290 1.23807 0.98123 0.92146 0.99729 1.77364 0.96217 1.13209 1.24251 1.47949 1.04132 1.04426 1.57291 1.21408 1.03226 0.80162 0.95948 1.20299 0.77706 0.80719 0.91150 1.90758 1.50118 1.53936 1.45797 1.49015 1.65677 1.10323 1.09999 1.22995 0.98968 0.89442 0.91771 1.22946 0.96255 0.98495 0.94896 0.89828 1.22135 0.96171 0.95712 0.95765 0.90536 1.22761 0.98727 0.95521 0.84850 1.21814 0.98124 0.94842 0.98194 0.91594 1.21488 0.96647 0.99804 0.96443 1.22179 0.98152 1.01117 0.95867 1.20504 0.88447 0.88619 0.95333 0.91406 1.44607 1.29702 1.55574 1.02370 1.19257 1.04295 1.21287 0.91657 0.90738 1.24788 0.99252 1.00641 0.95639 1.70015 1.35855 1.47536 1.03584 0.86176 0.81771 0.79977 0.78149 1.21713 1.21769 1.20793 1.21103 0.92016 0.95689 0.83287 0.90041 0.89437 0.91191 0.83609 0.80068 0.86133 0.85833 0.89459 0.91080 0.90165 0.90724 0.93241 0.92426 0.92986 0.92026 0.93820 0.92997 0.93226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.79 9.90 36.00 0.36 -0.43 16 2 C 0.10 1.10 6.93 -82.27 -0.57 0.53 16 3 C -0.28 -3.03 10.72 -40.01 -0.43 -3.45 16 4 C 0.05 0.56 12.03 -17.36 -0.21 0.35 16 5 N -0.29 -4.12 12.58 30.63 0.39 -3.74 16 6 N -0.36 -4.60 3.10 -58.31 -0.18 -4.78 16 7 C 0.12 1.27 5.52 -5.19 -0.03 1.24 16 8 C 0.52 7.24 7.98 -10.98 -0.09 7.15 16 9 O -0.53 -9.73 16.70 5.56 0.09 -9.64 16 10 N -0.62 -8.06 3.32 -169.12 -0.56 -8.62 16 11 C 0.09 1.04 6.18 -2.30 -0.01 1.02 16 12 C -0.10 -1.55 3.47 -88.47 -0.31 -1.86 16 13 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 14 C -0.08 -1.21 3.15 -88.64 -0.28 -1.49 16 15 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 16 C 0.10 1.45 6.34 -2.37 -0.02 1.44 16 17 C -0.11 -1.88 2.86 -90.28 -0.26 -2.14 16 18 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 19 C -0.11 -1.64 5.30 -26.75 -0.14 -1.79 16 20 C -0.13 -2.06 5.52 -26.60 -0.15 -2.21 16 21 C 0.18 3.11 3.16 -66.99 -0.21 2.90 16 22 H 0.07 1.15 7.99 -51.93 -0.42 0.74 16 23 N -0.60 -13.50 2.87 -163.17 -0.47 -13.97 16 24 C -0.24 -6.03 9.99 -15.06 -0.15 -6.18 16 25 H 0.07 1.84 7.79 -52.49 -0.41 1.43 16 26 C -0.01 -0.19 5.47 -17.43 -0.10 -0.29 16 27 N -0.92 -25.64 9.77 55.49 0.54 -25.10 16 28 Si 0.91 21.18 29.55 -169.99 -5.02 16.15 16 29 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 30 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 31 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 32 C 0.20 4.53 4.37 -3.11 -0.01 4.52 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.63 7.72 -51.93 -0.40 0.23 16 36 H 0.15 1.21 8.06 -52.48 -0.42 0.79 16 37 H 0.18 1.45 8.06 -52.49 -0.42 1.03 16 38 H 0.12 0.93 7.47 -51.93 -0.39 0.55 16 39 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.09 0.95 5.21 -51.93 -0.27 0.68 16 41 H 0.07 0.62 7.30 -51.92 -0.38 0.24 16 42 H 0.08 1.10 5.31 -51.92 -0.28 0.82 16 43 H 0.07 1.12 7.89 -51.93 -0.41 0.71 16 44 H 0.05 0.67 5.79 -51.93 -0.30 0.37 16 45 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 46 H 0.05 0.66 5.67 -51.93 -0.29 0.37 16 47 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 48 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 49 H 0.05 1.32 7.23 -51.93 -0.38 0.95 16 50 H 0.05 1.26 7.23 -51.93 -0.38 0.88 16 LS Contribution 380.25 15.07 5.73 5.73 Total: -1.00 -33.02 380.25 -9.74 -42.77 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -7.66 Total: 1.88 kcal Atomic # 6 Polarization: 1.92 SS G_CDS: -2.60 Total: -0.68 kcal Atomic # 7 Polarization: -55.93 SS G_CDS: -0.28 Total: -56.21 kcal Atomic # 8 Polarization: -9.73 SS G_CDS: 0.09 Total: -9.64 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.02 -9.74 -42.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087394690.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.986 kcal (2) G-P(sol) polarization free energy of solvation -33.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds