Wall clock time and date at job start Wed Apr 1 2020 03:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35316 * 126.12564 * 2 1 4 4 C 1.39869 * 107.92252 * 180.02562 * 3 2 1 5 5 N 1.30843 * 108.19810 * 359.74350 * 4 3 2 6 6 N 1.34948 * 126.12956 * 180.02562 * 2 1 3 7 7 C 1.46499 * 126.03628 * 359.95102 * 6 2 1 8 8 C 1.50706 * 109.46637 * 90.00005 * 7 6 2 9 9 O 1.21274 * 119.99953 * 0.02562 * 8 7 6 10 10 N 1.34785 * 119.99517 * 179.97438 * 8 7 6 11 11 C 1.48161 * 127.83911 * 0.04915 * 10 8 7 12 12 C 1.54583 * 104.84551 * 139.84282 * 11 10 8 13 13 H 1.08998 * 111.93829 * 263.70225 * 12 11 10 14 14 C 1.55266 * 104.36426 * 24.66372 * 12 11 10 15 15 H 1.08996 * 111.04873 * 239.12780 * 14 12 11 16 16 C 1.48139 * 127.83133 * 180.02562 * 10 8 7 17 17 C 1.53028 * 109.85645 * 116.17166 * 14 12 11 18 18 H 1.09001 * 109.63274 * 180.25900 * 17 14 12 19 19 C 1.53040 * 109.21412 * 300.40092 * 17 14 12 20 20 C 1.52931 * 110.01666 * 59.32924 * 19 17 14 21 21 C 1.53230 * 108.90025 * 140.75907 * 12 11 10 22 22 H 1.08999 * 110.49628 * 68.61606 * 21 12 11 23 23 N 1.47696 * 108.05155 * 189.62113 * 21 12 11 24 24 C 1.36943 * 122.06736 * 239.29058 * 23 21 12 25 25 H 1.08002 * 119.99788 * 359.97438 * 24 23 21 26 26 C 1.38811 * 119.99622 * 180.27816 * 24 23 21 27 27 N 1.31614 * 120.00467 * 359.72375 * 26 24 23 28 28 Si 1.86801 * 119.99700 * 179.72266 * 26 24 23 29 29 H 1.48501 * 109.46896 * 89.99850 * 28 26 24 30 30 H 1.48499 * 109.47039 * 210.00011 * 28 26 24 31 31 H 1.48501 * 109.47275 * 329.99811 * 28 26 24 32 32 C 1.47637 * 115.86361 * 59.56263 * 23 21 12 33 33 H 1.09002 * 109.47456 * 269.97173 * 1 2 3 34 34 H 1.09003 * 109.47135 * 29.97279 * 1 2 3 35 35 H 1.08998 * 109.47471 * 149.97263 * 1 2 3 36 36 H 1.08004 * 126.04428 * 0.02610 * 3 2 1 37 37 H 1.08001 * 125.90310 * 180.02562 * 4 3 2 38 38 H 1.09002 * 109.47445 * 330.01013 * 7 6 2 39 39 H 1.08999 * 109.47379 * 210.00132 * 7 6 2 40 40 H 1.09003 * 110.42220 * 259.04013 * 11 10 8 41 41 H 1.09011 * 110.42047 * 21.38486 * 11 10 8 42 42 H 1.09007 * 110.39249 * 100.65148 * 16 10 8 43 43 H 1.09000 * 110.49570 * 338.29512 * 16 10 8 44 44 H 1.08995 * 109.38615 * 299.15645 * 19 17 14 45 45 H 1.09004 * 109.37599 * 179.49292 * 19 17 14 46 46 H 1.08999 * 109.45247 * 240.65935 * 20 19 17 47 47 H 1.08994 * 109.45836 * 120.72742 * 20 19 17 48 48 H 0.96995 * 120.00147 * 180.02562 * 27 26 24 49 49 H 1.08994 * 109.99755 * 119.21098 * 32 23 21 50 50 H 1.08999 * 109.99522 * 240.59399 * 32 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3047 1.0930 0.0000 4 6 3.6334 0.6561 -0.0006 5 7 3.6333 -0.6524 0.0046 6 7 2.3026 -1.0900 -0.0005 7 6 1.8539 -2.4846 -0.0001 8 6 1.6991 -2.9627 -1.4209 9 8 1.9403 -2.2126 -2.3428 10 7 1.2936 -4.2244 -1.6668 11 6 0.9548 -5.2784 -0.6822 12 6 -0.2854 -5.9878 -1.2724 13 1 -1.2142 -5.5977 -0.8562 14 6 -0.1873 -5.7277 -2.8000 15 1 -1.0678 -5.1987 -3.1644 16 6 1.0852 -4.8715 -2.9830 17 6 -0.0031 -7.0533 -3.5422 18 1 0.0699 -6.8661 -4.6135 19 6 1.2772 -7.7322 -3.0503 20 6 1.1894 -7.9871 -1.5449 21 6 -0.1634 -7.4939 -1.0183 22 1 -0.2609 -7.7106 0.0455 23 7 -1.2268 -8.1749 -1.7844 24 6 -2.1769 -8.9518 -1.1769 25 1 -2.1632 -9.0819 -0.1048 26 6 -3.1537 -9.5769 -1.9396 27 7 -3.1701 -9.4187 -3.2461 28 14 -4.4451 -10.6429 -1.1117 29 1 -5.6169 -9.8070 -0.7464 30 1 -4.8739 -11.7156 -2.0448 31 1 -3.8712 -11.2535 0.1143 32 6 -1.1983 -7.9713 -3.2464 33 1 -0.3634 -0.0005 1.0277 34 1 -0.3633 0.8902 -0.5134 35 1 -0.3634 -0.8897 -0.5142 36 1 1.9740 2.1211 0.0004 37 1 4.5083 1.2892 -0.0004 38 1 0.8957 -2.5579 0.5142 39 1 2.5902 -3.1030 0.5133 40 1 1.7831 -5.9787 -0.5745 41 1 0.7066 -4.8331 0.2813 42 1 1.9365 -5.5044 -3.2341 43 1 0.9297 -4.1202 -3.7573 44 1 2.1314 -7.0882 -3.2589 45 1 1.4062 -8.6812 -3.5709 46 1 1.9929 -7.4520 -1.0387 47 1 1.2869 -9.0552 -1.3512 48 1 -3.8529 -9.8553 -3.7790 49 1 -1.0711 -8.9277 -3.7535 50 1 -2.1219 -7.4943 -3.5744 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087394690.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:56:05 Heat of formation + Delta-G solvation = 72.094088 kcal Electronic energy + Delta-G solvation = -31373.017678 eV Core-core repulsion = 27402.327272 eV Total energy + Delta-G solvation = -3970.690405 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.35922 -41.98798 -40.11644 -37.22004 -35.04255 -34.47042 -33.27831 -32.96124 -31.72443 -31.57958 -29.37659 -28.08229 -27.79547 -27.02789 -25.15961 -23.65188 -22.49523 -22.35163 -22.07739 -21.28843 -20.16271 -19.16219 -18.45636 -17.91880 -17.61526 -17.20710 -16.78622 -16.58217 -16.38559 -16.00242 -15.63927 -15.50185 -15.01623 -14.74207 -14.64006 -14.20052 -14.14359 -13.81238 -13.80502 -13.72037 -13.61097 -13.34896 -13.15570 -13.00915 -12.91643 -12.87742 -12.82488 -12.56009 -12.34655 -12.16245 -12.05247 -11.88786 -11.75744 -11.57018 -11.29207 -11.16634 -10.82109 -10.70029 -10.47543 -10.19640 -9.76551 -9.43694 -8.80074 -7.71873 -5.09618 0.81053 1.40288 1.41752 1.48428 1.48750 1.56968 1.95193 1.99748 2.53790 3.27526 3.40668 3.51397 3.57985 3.69733 3.75711 3.81714 3.86151 4.05626 4.14169 4.15931 4.22585 4.28477 4.30897 4.33868 4.44185 4.52018 4.63325 4.67797 4.69215 4.76664 4.80279 4.83857 4.84662 4.90966 4.99758 5.02054 5.05531 5.14155 5.26608 5.28070 5.38851 5.45170 5.53565 5.58300 5.66084 5.75154 5.80564 5.93363 6.05393 6.32092 6.45552 6.76314 6.95784 7.21748 7.93616 8.43739 9.31178 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.020831 B = 0.002603 C = 0.002482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.849307 B =10753.692747 C =11278.633259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.083 3.917 3 C -0.288 4.288 4 C 0.043 3.957 5 N -0.333 5.333 6 N -0.368 5.368 7 C 0.119 3.881 8 C 0.515 3.485 9 O -0.580 6.580 10 N -0.612 5.612 11 C 0.101 3.899 12 C -0.099 4.099 13 H 0.073 0.927 14 C -0.075 4.075 15 H 0.057 0.943 16 C 0.112 3.888 17 C -0.102 4.102 18 H 0.070 0.930 19 C -0.103 4.103 20 C -0.128 4.128 21 C 0.172 3.828 22 H 0.077 0.923 23 N -0.616 5.616 24 C -0.234 4.234 25 H 0.084 0.916 26 C -0.070 4.070 27 N -0.953 5.953 28 Si 0.967 3.033 29 H -0.291 1.291 30 H -0.303 1.303 31 H -0.268 1.268 32 C 0.216 3.784 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.061 0.939 36 H 0.168 0.832 37 H 0.208 0.792 38 H 0.155 0.845 39 H 0.145 0.855 40 H 0.105 0.895 41 H 0.110 0.890 42 H 0.092 0.908 43 H 0.061 0.939 44 H 0.080 0.920 45 H 0.044 0.956 46 H 0.094 0.906 47 H 0.045 0.955 48 H 0.241 0.759 49 H 0.010 0.990 50 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.902 15.864 9.476 21.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.044 4.044 3 C -0.317 4.317 4 C -0.143 4.143 5 N -0.154 5.154 6 N -0.151 5.151 7 C -0.006 4.006 8 C 0.304 3.696 9 O -0.459 6.459 10 N -0.345 5.345 11 C -0.021 4.021 12 C -0.120 4.120 13 H 0.091 0.909 14 C -0.094 4.094 15 H 0.075 0.925 16 C -0.011 4.011 17 C -0.122 4.122 18 H 0.088 0.912 19 C -0.140 4.140 20 C -0.167 4.167 21 C 0.065 3.935 22 H 0.095 0.905 23 N -0.339 5.339 24 C -0.364 4.364 25 H 0.102 0.898 26 C -0.262 4.262 27 N -0.604 5.604 28 Si 0.797 3.203 29 H -0.218 1.218 30 H -0.230 1.230 31 H -0.193 1.193 32 C 0.091 3.909 33 H 0.123 0.877 34 H 0.115 0.885 35 H 0.080 0.920 36 H 0.185 0.815 37 H 0.225 0.775 38 H 0.172 0.828 39 H 0.163 0.837 40 H 0.123 0.877 41 H 0.128 0.872 42 H 0.110 0.890 43 H 0.080 0.920 44 H 0.098 0.902 45 H 0.063 0.937 46 H 0.112 0.888 47 H 0.064 0.936 48 H 0.050 0.950 49 H 0.028 0.972 50 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 11.620 15.064 8.957 21.028 hybrid contribution -1.743 -0.353 -0.594 1.875 sum 9.876 14.711 8.363 19.593 Atomic orbital electron populations 1.20571 0.85412 1.04327 1.04712 1.21694 0.96096 0.87194 0.99384 1.21580 0.92142 0.99931 1.18053 1.24368 0.99545 0.91893 0.98502 1.77283 0.97504 1.14504 1.26093 1.48148 1.03944 1.05315 1.57721 1.21648 1.05553 0.79757 0.93666 1.20925 0.76459 0.80114 0.92144 1.90739 1.52347 1.55179 1.47647 1.49008 1.65163 1.10514 1.09782 1.23023 0.97381 0.89166 0.92522 1.22757 0.97888 0.96985 0.94363 0.90889 1.21997 0.96453 0.94703 0.96274 0.92477 1.22572 0.97926 0.95055 0.85502 1.21642 0.96735 0.94766 0.99022 0.91164 1.21467 0.96384 0.99588 0.96560 1.22112 0.98044 1.00703 0.95793 1.20833 0.87768 0.89609 0.95283 0.90494 1.44875 1.30559 1.55739 1.02774 1.19686 1.04239 1.20309 0.92169 0.89807 1.25537 1.01696 1.02782 0.96203 1.70270 1.36369 1.48896 1.04815 0.85233 0.79535 0.78139 0.77384 1.21807 1.22993 1.19298 1.20622 0.92543 0.94347 0.83366 0.87682 0.88463 0.91959 0.81454 0.77546 0.82778 0.83739 0.87726 0.87165 0.88979 0.92005 0.90187 0.93728 0.88823 0.93568 0.94980 0.97217 0.97547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.28 9.90 71.23 0.71 -0.57 16 2 C 0.08 1.73 6.93 41.40 0.29 2.01 16 3 C -0.29 -5.71 10.72 21.99 0.24 -5.48 16 4 C 0.04 0.92 12.03 85.24 1.03 1.95 16 5 N -0.33 -8.93 12.58 -57.02 -0.72 -9.65 16 6 N -0.37 -8.68 3.10 -338.40 -1.05 -9.73 16 7 C 0.12 2.13 5.52 85.64 0.47 2.60 16 8 C 0.52 13.12 7.98 87.66 0.70 13.82 16 9 O -0.58 -20.63 16.70 -3.01 -0.05 -20.68 16 10 N -0.61 -13.98 3.32 -807.37 -2.68 -16.66 16 11 C 0.10 1.82 6.18 86.60 0.53 2.36 16 12 C -0.10 -2.69 3.47 -9.40 -0.03 -2.73 16 13 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 14 C -0.07 -2.25 3.15 -9.51 -0.03 -2.28 16 15 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 16 C 0.11 2.91 6.34 86.56 0.55 3.46 16 17 C -0.10 -3.50 2.86 -10.57 -0.03 -3.53 16 18 H 0.07 2.31 8.14 -2.39 -0.02 2.30 16 19 C -0.10 -2.99 5.30 30.58 0.16 -2.83 16 20 C -0.13 -3.56 5.52 30.68 0.17 -3.39 16 21 C 0.17 5.59 3.16 44.95 0.14 5.73 16 22 H 0.08 2.38 7.99 -2.39 -0.02 2.36 16 23 N -0.62 -28.07 2.87 -670.15 -1.92 -30.00 16 24 C -0.23 -12.08 9.99 84.03 0.84 -11.24 16 25 H 0.08 4.07 7.79 -2.91 -0.02 4.05 16 26 C -0.07 -3.83 5.47 84.86 0.46 -3.36 16 27 N -0.95 -55.94 9.77 21.65 0.21 -55.72 16 28 Si 0.97 44.50 29.55 68.60 2.03 46.53 16 29 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 30 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 31 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 32 C 0.22 10.13 4.37 86.36 0.38 10.51 16 33 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.06 0.97 7.72 -2.39 -0.02 0.95 16 36 H 0.17 2.37 8.06 -2.91 -0.02 2.34 16 37 H 0.21 2.93 8.06 -2.91 -0.02 2.91 16 38 H 0.15 1.65 7.47 -2.39 -0.02 1.64 16 39 H 0.14 1.98 8.14 -2.39 -0.02 1.96 16 40 H 0.11 1.62 5.21 -2.39 -0.01 1.61 16 41 H 0.11 1.24 7.30 -2.38 -0.02 1.23 16 42 H 0.09 2.21 5.31 -2.38 -0.01 2.20 16 43 H 0.06 1.80 7.89 -2.39 -0.02 1.78 16 44 H 0.08 1.88 5.79 -2.39 -0.01 1.87 16 45 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.09 1.87 5.67 -2.39 -0.01 1.86 16 47 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.24 13.98 8.31 -92.71 -0.77 13.21 16 49 H 0.01 0.53 7.23 -2.39 -0.02 0.51 16 50 H 0.01 0.35 7.23 -2.39 -0.02 0.33 16 Total: -1.00 -77.25 380.25 3.34 -73.91 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: 0.95 Total: 14.96 kcal Atomic # 6 Polarization: 0.47 SS G_CDS: 6.57 Total: 7.04 kcal Atomic # 7 Polarization: -115.60 SS G_CDS: -6.16 Total: -121.76 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.05 Total: -20.68 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -77.25 3.34 -73.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087394690.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.003 kcal (2) G-P(sol) polarization free energy of solvation -77.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds