Wall clock time and date at job start Wed Apr 1 2020 04:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32129 * 119.90353 * 2 1 4 4 C 1.32079 * 120.07525 * 179.72061 * 3 2 1 5 5 C 1.50700 * 120.06995 * 180.26708 * 4 3 2 6 6 C 1.39448 * 119.87020 * 0.56921 * 4 3 2 7 7 C 1.48144 * 120.09947 * 179.68090 * 6 4 3 8 8 O 1.21516 * 119.99958 * 354.37433 * 7 6 4 9 9 N 1.34779 * 119.99868 * 174.37313 * 7 6 4 10 10 C 1.47388 * 125.73963 * 179.97438 * 9 7 6 11 11 C 1.55405 * 106.73732 * 179.02717 * 10 9 7 12 12 H 1.09001 * 112.76015 * 147.12704 * 11 10 9 13 13 C 1.52916 * 106.57150 * 270.99289 * 11 10 9 14 14 C 1.51567 * 111.66253 * 169.88838 * 13 11 10 15 15 N 1.44353 * 113.01806 * 320.12347 * 14 13 11 16 16 C 1.36939 * 116.42343 * 188.03291 * 15 14 13 17 17 H 1.08000 * 119.99386 * 155.13618 * 16 15 14 18 18 C 1.38812 * 119.99964 * 335.13056 * 16 15 14 19 19 N 1.31613 * 120.00209 * 4.98128 * 18 16 15 20 20 Si 1.86801 * 119.99783 * 184.97610 * 18 16 15 21 21 H 1.48497 * 109.47149 * 89.99980 * 20 18 16 22 22 H 1.48495 * 109.47017 * 210.00511 * 20 18 16 23 23 H 1.48504 * 109.46907 * 330.00369 * 20 18 16 24 24 C 1.43972 * 127.14703 * 8.00361 * 15 14 13 25 25 C 1.49788 * 116.29950 * 2.91793 * 24 15 14 26 26 H 1.08998 * 109.26039 * 141.36206 * 25 24 15 27 27 C 1.47931 * 125.74405 * 359.68789 * 9 7 6 28 28 N 1.33008 * 119.80353 * 359.70096 * 6 4 3 29 29 C 1.31802 * 119.92425 * 0.02562 * 28 6 4 30 30 C 1.50703 * 119.93444 * 179.97438 * 29 28 6 31 31 H 1.08996 * 109.47556 * 269.73467 * 1 2 3 32 32 H 1.09002 * 109.47309 * 149.72953 * 1 2 3 33 33 H 1.09009 * 109.46902 * 29.73307 * 1 2 3 34 34 H 1.08991 * 109.47463 * 263.48393 * 5 4 3 35 35 H 1.08996 * 109.46640 * 23.48919 * 5 4 3 36 36 H 1.09006 * 109.47116 * 143.48398 * 5 4 3 37 37 H 1.09001 * 110.00144 * 298.34888 * 10 9 7 38 38 H 1.08997 * 110.00099 * 59.70719 * 10 9 7 39 39 H 1.08993 * 109.04051 * 290.45588 * 13 11 10 40 40 H 1.08999 * 109.03744 * 49.40493 * 13 11 10 41 41 H 1.08996 * 108.77670 * 81.03557 * 14 13 11 42 42 H 1.09001 * 108.77570 * 199.32761 * 14 13 11 43 43 H 0.97005 * 120.00097 * 179.97438 * 19 18 16 44 44 H 1.09007 * 108.11271 * 124.66953 * 24 15 14 45 45 H 1.08998 * 108.11834 * 241.33419 * 24 15 14 46 46 H 1.08999 * 110.56978 * 274.18735 * 27 9 7 47 47 H 1.09000 * 110.56003 * 37.04246 * 27 9 7 48 48 H 1.09004 * 109.47079 * 270.02302 * 30 29 28 49 49 H 1.09004 * 109.47123 * 30.01908 * 30 29 28 50 50 H 1.08996 * 109.47487 * 150.02610 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1657 1.1454 0.0000 4 6 3.4865 1.1493 0.0056 5 6 4.2377 2.4558 0.0117 6 6 4.1847 -0.0578 -0.0006 7 6 5.6661 -0.0592 -0.0015 8 8 6.2746 0.9880 -0.1001 9 7 6.3389 -1.2220 0.1071 10 6 7.8053 -1.3703 0.1194 11 6 8.1004 -2.8868 0.2870 12 1 9.0077 -3.1995 -0.2298 13 6 8.1624 -3.1554 1.7911 14 6 8.2003 -4.6402 2.0931 15 7 7.3290 -5.4123 1.2396 16 6 7.1779 -6.7351 1.5598 17 1 6.2870 -7.2655 1.2573 18 6 8.1696 -7.3942 2.2732 19 7 9.2089 -6.7259 2.7265 20 14 8.0292 -9.2298 2.5898 21 1 8.6781 -9.9745 1.4811 22 1 8.7016 -9.5640 3.8709 23 1 6.5958 -9.6101 2.6692 24 6 6.6010 -4.9443 0.0890 25 6 6.8204 -3.5141 -0.2985 26 1 6.8481 -3.4363 -1.3853 27 6 5.7300 -2.5636 0.2399 28 7 3.5166 -1.2079 -0.0060 29 6 2.1985 -1.2026 -0.0060 30 6 1.4413 -2.5056 -0.0127 31 1 -0.3634 -0.0048 1.0276 32 1 -0.3634 -0.8876 -0.5180 33 1 -0.3633 0.8924 -0.5097 34 1 4.5242 2.7149 -1.0075 35 1 3.5999 3.2396 0.4203 36 1 5.1322 2.3577 0.6268 37 1 8.2243 -1.0104 -0.8203 38 1 8.2293 -0.8133 0.9548 39 1 9.0575 -2.6864 2.1994 40 1 7.2840 -2.7192 2.2667 41 1 9.2221 -4.9979 1.9668 42 1 7.9006 -4.7951 3.1296 43 1 9.9017 -7.1864 3.2253 44 1 6.8715 -5.5708 -0.7610 45 1 5.5370 -5.0808 0.2825 46 1 5.5099 -2.7826 1.2847 47 1 4.8267 -2.6356 -0.3659 48 1 1.2592 -2.8146 -1.0421 49 1 2.0281 -3.2694 0.4975 50 1 0.4891 -2.3751 0.5013 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088035376.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:31 Heat of formation + Delta-G solvation = 37.243762 kcal Electronic energy + Delta-G solvation = -31276.121181 eV Core-core repulsion = 27303.919552 eV Total energy + Delta-G solvation = -3972.201629 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.68846 -41.36362 -39.73715 -37.41982 -36.12563 -35.39915 -34.21970 -33.11419 -31.92788 -31.15468 -30.09952 -29.20214 -27.56522 -26.90653 -25.32306 -24.52558 -23.57977 -23.43846 -22.61608 -20.92251 -19.51077 -19.29846 -18.87118 -17.95309 -17.36086 -17.09785 -16.75302 -16.45083 -16.24444 -15.83635 -15.60075 -15.24643 -14.95192 -14.75196 -14.56158 -14.36396 -14.32784 -13.94287 -13.88652 -13.74358 -13.67976 -13.64027 -13.34547 -13.28117 -13.14334 -13.09872 -12.75441 -12.70106 -12.59421 -12.37906 -12.15440 -12.00670 -11.90678 -11.58875 -11.46676 -11.32833 -11.25159 -11.08255 -10.43930 -10.14525 -10.05634 -9.64013 -8.67731 -7.61853 -5.29167 -0.75762 -0.11044 1.48692 1.49865 1.50613 1.58375 1.71349 2.51886 2.52138 2.72405 2.89497 3.20277 3.29243 3.33879 3.52872 3.62236 3.78914 3.80400 3.85045 3.93998 4.14528 4.19237 4.34866 4.48760 4.59178 4.63787 4.64504 4.66253 4.71400 4.74277 4.75564 4.77085 4.78181 4.83111 4.90737 4.96306 5.05242 5.05810 5.10293 5.11161 5.22408 5.27978 5.31323 5.35254 5.45297 5.58189 5.77422 6.05481 6.12464 6.29037 6.51519 6.55511 6.88608 7.29008 8.12750 8.29074 9.19668 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.015010 B = 0.003036 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1864.999282 B = 9219.661787 C =10696.532249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.112 3.888 3 N -0.458 5.458 4 C 0.127 3.873 5 C -0.097 4.097 6 C 0.001 3.999 7 C 0.583 3.417 8 O -0.550 6.550 9 N -0.597 5.597 10 C 0.115 3.885 11 C -0.076 4.076 12 H 0.103 0.897 13 C -0.119 4.119 14 C 0.190 3.810 15 N -0.613 5.613 16 C -0.273 4.273 17 H 0.070 0.930 18 C -0.048 4.048 19 N -0.933 5.933 20 Si 0.969 3.031 21 H -0.284 1.284 22 H -0.296 1.296 23 H -0.270 1.270 24 C 0.181 3.819 25 C -0.097 4.097 26 H 0.094 0.906 27 C 0.124 3.876 28 N -0.417 5.417 29 C 0.064 3.936 30 C -0.102 4.102 31 H 0.103 0.897 32 H 0.112 0.888 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.040 0.960 41 H 0.058 0.942 42 H -0.014 1.014 43 H 0.244 0.756 44 H 0.018 0.982 45 H 0.016 0.984 46 H 0.050 0.950 47 H 0.115 0.885 48 H 0.102 0.898 49 H 0.074 0.926 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.578 13.994 -7.721 23.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.031 4.031 3 N -0.173 5.173 4 C -0.012 4.012 5 C -0.154 4.154 6 C -0.138 4.138 7 C 0.371 3.629 8 O -0.429 6.429 9 N -0.328 5.328 10 C -0.007 4.007 11 C -0.095 4.095 12 H 0.121 0.879 13 C -0.157 4.157 14 C 0.065 3.935 15 N -0.339 5.339 16 C -0.403 4.403 17 H 0.088 0.912 18 C -0.242 4.242 19 N -0.580 5.580 20 Si 0.797 3.203 21 H -0.210 1.210 22 H -0.222 1.222 23 H -0.195 1.195 24 C 0.055 3.945 25 C -0.117 4.117 26 H 0.112 0.888 27 C 0.001 3.999 28 N -0.135 5.135 29 C -0.080 4.080 30 C -0.160 4.160 31 H 0.122 0.878 32 H 0.131 0.869 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.110 0.890 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.059 0.941 41 H 0.076 0.924 42 H 0.004 0.996 43 H 0.055 0.945 44 H 0.036 0.964 45 H 0.034 0.966 46 H 0.068 0.932 47 H 0.132 0.868 48 H 0.120 0.880 49 H 0.093 0.907 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -16.089 14.668 -7.709 23.096 hybrid contribution 0.516 -1.139 0.679 1.423 sum -15.573 13.529 -7.030 21.793 Atomic orbital electron populations 1.21012 0.84054 1.05846 1.05236 1.23189 1.00585 0.88139 0.91190 1.68394 1.07252 1.29901 1.11795 1.22470 0.90363 0.96623 0.91758 1.20949 0.99506 0.90555 1.04425 1.21714 0.94828 0.91092 1.06197 1.17467 0.85587 0.82574 0.77306 1.90710 1.69212 1.30611 1.52399 1.48579 1.08066 1.06734 1.69450 1.22425 0.79292 0.96482 1.02462 1.22022 0.98627 0.92534 0.96347 0.87865 1.21701 1.00772 0.97679 0.95562 1.20173 0.95725 0.87309 0.90277 1.43004 1.54332 1.07379 1.29142 1.19632 1.01072 0.87669 1.31943 0.91199 1.25940 0.95876 1.01923 1.00458 1.70343 1.12222 1.34210 1.41254 0.85239 0.77746 0.80670 0.76634 1.21032 1.22222 1.19506 1.19221 0.94425 0.92199 0.88645 1.21606 0.94985 0.94006 1.01070 0.88807 1.22699 0.97162 0.78937 1.01053 1.68392 1.09622 1.27781 1.07656 1.22909 0.89611 0.98771 0.96757 1.20932 0.99933 0.90007 1.05083 0.87838 0.86922 0.89511 0.89361 0.89631 0.88991 0.90076 0.91109 0.91298 0.94118 0.92428 0.99583 0.94546 0.96406 0.96625 0.93182 0.86771 0.88009 0.90742 0.86914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.90 9.37 71.24 0.67 -0.23 16 2 C 0.11 2.08 6.79 42.63 0.29 2.37 16 3 N -0.46 -10.73 10.34 -170.48 -1.76 -12.49 16 4 C 0.13 3.32 6.82 42.81 0.29 3.61 16 5 C -0.10 -2.24 8.88 71.24 0.63 -1.60 16 6 C 0.00 0.02 6.71 41.89 0.28 0.30 16 7 C 0.58 18.38 7.79 86.87 0.68 19.06 16 8 O -0.55 -18.51 13.67 -3.77 -0.05 -18.56 16 9 N -0.60 -18.37 3.34 -811.57 -2.71 -21.08 16 10 C 0.12 3.35 6.24 87.04 0.54 3.90 16 11 C -0.08 -2.47 3.65 -9.62 -0.04 -2.51 16 12 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 13 C -0.12 -4.55 4.78 30.10 0.14 -4.41 16 14 C 0.19 9.41 4.66 86.31 0.40 9.81 16 15 N -0.61 -30.54 3.25 -722.44 -2.35 -32.89 16 16 C -0.27 -14.93 9.42 84.03 0.79 -14.14 16 17 H 0.07 3.70 7.83 -2.91 -0.02 3.68 16 18 C -0.05 -2.65 5.40 84.86 0.46 -2.19 16 19 N -0.93 -54.26 9.54 21.65 0.21 -54.05 16 20 Si 0.97 44.59 29.56 68.60 2.03 46.61 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 22 H -0.30 -13.72 7.11 99.48 0.71 -13.01 16 23 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 24 C 0.18 7.27 5.75 85.82 0.49 7.76 16 25 C -0.10 -3.15 2.84 -11.00 -0.03 -3.18 16 26 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 27 C 0.12 3.82 4.83 86.56 0.42 4.23 16 28 N -0.42 -11.00 6.70 -172.52 -1.16 -12.15 16 29 C 0.06 1.29 6.79 42.68 0.29 1.58 16 30 C -0.10 -1.25 9.37 71.24 0.67 -0.58 16 31 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.11 0.39 6.69 -2.39 -0.02 0.37 16 33 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 35 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.09 2.41 5.85 -2.38 -0.01 2.39 16 37 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 38 H 0.07 2.08 7.79 -2.39 -0.02 2.06 16 39 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.04 1.57 6.60 -2.39 -0.02 1.56 16 41 H 0.06 3.23 5.90 -2.39 -0.01 3.22 16 42 H -0.01 -0.80 7.75 -2.39 -0.02 -0.82 16 43 H 0.24 13.83 8.31 -92.70 -0.77 13.06 16 44 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 45 H 0.02 0.63 7.80 -2.39 -0.02 0.61 16 46 H 0.05 1.77 7.16 -2.39 -0.02 1.75 16 47 H 0.11 3.32 5.74 -2.39 -0.01 3.31 16 48 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 49 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 50 H 0.11 0.69 6.70 -2.39 -0.02 0.67 16 Total: -1.00 -69.24 381.47 2.14 -67.10 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: 0.95 Total: 13.73 kcal Atomic # 6 Polarization: 16.79 SS G_CDS: 6.98 Total: 23.77 kcal Atomic # 7 Polarization: -124.89 SS G_CDS: -7.77 Total: -132.67 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.05 Total: -18.56 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -69.24 2.14 -67.10 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088035376.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.348 kcal (2) G-P(sol) polarization free energy of solvation -69.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.135 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds