Wall clock time and date at job start Wed Apr 1 2020 04:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32136 * 119.90126 * 2 1 4 4 C 1.32086 * 120.06707 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.05879 * 179.97438 * 4 3 2 6 6 C 1.39441 * 119.87414 * 0.02562 * 4 3 2 7 7 C 1.48152 * 120.09304 * 179.97438 * 6 4 3 8 8 O 1.21515 * 120.00544 * 354.24482 * 7 6 4 9 9 N 1.34782 * 119.99650 * 174.24260 * 7 6 4 10 10 C 1.47205 * 126.70384 * 0.02562 * 9 7 6 11 11 C 1.53777 * 106.42839 * 148.66013 * 10 9 7 12 12 H 1.08999 * 111.86538 * 140.64213 * 11 10 9 13 13 C 1.55895 * 109.55324 * 267.25505 * 11 10 9 14 14 N 1.47217 * 106.49017 * 131.62585 * 13 11 10 15 15 C 1.36939 * 126.69878 * 148.25875 * 14 13 11 16 16 H 1.08000 * 119.99742 * 179.97438 * 15 14 13 17 17 C 1.38810 * 120.00148 * 359.97438 * 15 14 13 18 18 N 1.31621 * 120.00031 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99971 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47071 * 59.99748 * 19 17 15 21 21 H 1.48500 * 109.47202 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46875 * 300.00144 * 19 17 15 23 23 C 1.47213 * 106.59693 * 328.24184 * 14 13 11 24 24 C 1.53777 * 106.37963 * 31.26614 * 23 14 13 25 25 C 1.52995 * 111.85824 * 104.04670 * 24 23 14 26 26 C 1.47211 * 126.69999 * 179.97438 * 9 7 6 27 27 N 1.32995 * 119.80773 * 0.26764 * 6 4 3 28 28 C 1.31800 * 119.92553 * 359.45383 * 27 6 4 29 29 C 1.50706 * 119.93814 * 180.25009 * 28 27 6 30 30 H 1.09000 * 109.47291 * 89.99295 * 1 2 3 31 31 H 1.09005 * 109.47113 * 209.99759 * 1 2 3 32 32 H 1.08999 * 109.46691 * 329.99411 * 1 2 3 33 33 H 1.09007 * 109.47173 * 263.35937 * 5 4 3 34 34 H 1.09000 * 109.47377 * 23.36340 * 5 4 3 35 35 H 1.09004 * 109.47106 * 143.36691 * 5 4 3 36 36 H 1.09000 * 110.07752 * 267.91484 * 10 9 7 37 37 H 1.09001 * 110.07752 * 29.39894 * 10 9 7 38 38 H 1.08999 * 110.42747 * 12.13801 * 13 11 10 39 39 H 1.09000 * 109.65592 * 250.69551 * 13 11 10 40 40 H 0.97001 * 119.99585 * 180.02562 * 18 17 15 41 41 H 1.09003 * 110.06770 * 272.04097 * 23 14 13 42 42 H 1.08995 * 110.12227 * 150.52568 * 23 14 13 43 43 H 1.08994 * 109.47486 * 182.04949 * 25 24 23 44 44 H 1.09005 * 109.47400 * 302.04758 * 25 24 23 45 45 H 1.09000 * 109.46869 * 62.04487 * 25 24 23 46 46 H 1.08995 * 110.08135 * 330.54168 * 26 9 7 47 47 H 1.09004 * 110.07225 * 92.08179 * 26 9 7 48 48 H 1.09001 * 109.46673 * 270.29861 * 29 28 27 49 49 H 1.08998 * 109.46577 * 30.30083 * 29 28 27 50 50 H 1.08997 * 109.46902 * 150.29610 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1657 1.1455 0.0000 4 6 3.4866 1.1493 0.0005 5 6 4.2376 2.4558 -0.0001 6 6 4.1846 -0.0578 0.0005 7 6 5.6661 -0.0592 0.0005 8 8 6.2748 0.9872 -0.1050 9 7 6.3389 -1.2212 0.1176 10 6 5.7554 -2.5659 0.2527 11 6 6.7398 -3.5368 -0.4204 12 1 6.8350 -4.4691 0.1362 13 6 6.3312 -3.7446 -1.9104 14 7 7.5563 -3.5705 -2.7079 15 6 7.8636 -4.2010 -3.8840 16 1 8.7990 -3.9904 -4.3812 17 6 6.9730 -5.1106 -4.4373 18 7 5.8328 -5.3669 -3.8317 19 14 7.3919 -5.9700 -6.0421 20 1 8.6437 -6.7508 -5.8733 21 1 6.2846 -6.8858 -6.4170 22 1 7.5807 -4.9570 -7.1114 23 6 8.3863 -2.5862 -1.9942 24 6 8.0828 -2.7668 -0.4976 25 6 9.2091 -3.5068 0.2268 26 6 7.8008 -1.3936 0.1343 27 7 3.5166 -1.2078 -0.0054 28 6 2.1986 -1.2026 -0.0003 29 6 1.4414 -2.5056 -0.0013 30 1 -0.3634 0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5139 33 1 4.5222 2.7109 -1.0210 34 1 3.6007 3.2413 0.4067 35 1 5.1335 2.3602 0.6136 36 1 5.6410 -2.8200 1.3065 37 1 4.7884 -2.6063 -0.2486 38 1 5.5843 -3.0079 -2.2063 39 1 5.9368 -4.7517 -2.0454 40 1 5.2106 -6.0028 -4.2181 41 1 8.1237 -1.5765 -2.3100 42 1 9.4421 -2.7756 -2.1874 43 1 8.9385 -3.6454 1.2735 44 1 9.3640 -4.4795 -0.2402 45 1 10.1273 -2.9229 0.1630 46 1 8.2770 -0.6074 -0.4514 47 1 8.1684 -1.3713 1.1603 48 1 1.2595 -2.8193 -1.0293 49 1 2.0280 -3.2671 0.5127 50 1 0.4890 -2.3728 0.5119 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001091838269.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:36 Heat of formation + Delta-G solvation = 53.481520 kcal Electronic energy + Delta-G solvation = -31740.181696 eV Core-core repulsion = 27768.684190 eV Total energy + Delta-G solvation = -3971.497507 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.59291 -39.99750 -38.26725 -35.39782 -34.68554 -34.42182 -32.75133 -30.75190 -30.33874 -29.90089 -29.12745 -27.02424 -26.12060 -25.30242 -25.02678 -23.69339 -22.49786 -21.92553 -20.19014 -19.72912 -18.67160 -18.29771 -16.81794 -16.47835 -16.09558 -15.63658 -15.35716 -15.19659 -14.75885 -14.11291 -14.00834 -13.75087 -13.62930 -13.43779 -13.30303 -13.25548 -12.99743 -12.82538 -12.74870 -12.54984 -12.42953 -12.23898 -12.08541 -11.87169 -11.74362 -11.67631 -11.46729 -11.09739 -10.93955 -10.87401 -10.84813 -10.74186 -10.15549 -10.13326 -9.92256 -9.82529 -9.70599 -9.38523 -9.01314 -8.96878 -8.70325 -8.29969 -6.86462 -5.63482 -3.08554 0.33634 0.95256 2.74315 3.03851 3.39603 3.43785 3.44885 3.64219 3.80525 3.87597 4.23710 4.46353 4.48172 4.76983 4.78436 5.04139 5.04251 5.09696 5.19102 5.26742 5.27947 5.49343 5.51095 5.53881 5.61813 5.65520 5.67240 5.69552 5.72449 5.79427 5.84488 5.90462 5.94924 6.03859 6.09982 6.11304 6.31703 6.34823 6.38861 6.44120 6.55173 6.62812 6.74085 6.83353 6.98890 7.10463 7.49943 7.58204 7.60170 7.75182 7.85057 8.23051 8.40775 9.21550 9.82128 10.50764 11.36990 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010946 B = 0.003822 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2557.420873 B = 7324.341083 C = 8701.447764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.103 3.897 3 N -0.444 5.444 4 C 0.135 3.865 5 C -0.103 4.103 6 C 0.033 3.967 7 C 0.590 3.410 8 O -0.535 6.535 9 N -0.585 5.585 10 C 0.097 3.903 11 C -0.118 4.118 12 H 0.086 0.914 13 C 0.149 3.851 14 N -0.595 5.595 15 C -0.218 4.218 16 H 0.077 0.923 17 C -0.012 4.012 18 N -0.921 5.921 19 Si 0.915 3.085 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.286 1.286 23 C 0.145 3.855 24 C -0.089 4.089 25 C -0.121 4.121 26 C 0.118 3.882 27 N -0.394 5.394 28 C 0.070 3.930 29 C -0.104 4.104 30 H 0.086 0.914 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.106 0.894 36 H 0.054 0.946 37 H 0.119 0.881 38 H 0.008 0.992 39 H 0.121 0.879 40 H 0.252 0.748 41 H 0.017 0.983 42 H 0.042 0.958 43 H 0.049 0.951 44 H 0.065 0.935 45 H 0.051 0.949 46 H 0.079 0.921 47 H 0.064 0.936 48 H 0.088 0.912 49 H 0.084 0.916 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.166 7.692 12.733 16.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.039 4.039 3 N -0.160 5.160 4 C -0.005 4.005 5 C -0.161 4.161 6 C -0.108 4.108 7 C 0.377 3.623 8 O -0.413 6.413 9 N -0.315 5.315 10 C -0.026 4.026 11 C -0.139 4.139 12 H 0.104 0.896 13 C 0.024 3.976 14 N -0.318 5.318 15 C -0.346 4.346 16 H 0.095 0.905 17 C -0.207 4.207 18 N -0.570 5.570 19 Si 0.745 3.255 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.213 1.213 23 C 0.018 3.982 24 C -0.091 4.091 25 C -0.179 4.179 26 C -0.004 4.004 27 N -0.111 5.111 28 C -0.073 4.073 29 C -0.162 4.162 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.124 0.876 36 H 0.072 0.928 37 H 0.136 0.864 38 H 0.026 0.974 39 H 0.139 0.861 40 H 0.063 0.937 41 H 0.034 0.966 42 H 0.061 0.939 43 H 0.068 0.932 44 H 0.084 0.916 45 H 0.070 0.930 46 H 0.098 0.902 47 H 0.082 0.918 48 H 0.106 0.894 49 H 0.103 0.897 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.920 8.173 12.471 16.883 hybrid contribution 0.212 -0.458 -0.898 1.030 sum -7.708 7.715 11.573 15.902 Atomic orbital electron populations 1.20830 0.87501 1.04109 1.03844 1.22396 0.98498 0.88976 0.94070 1.68287 1.07771 1.28860 1.11051 1.22283 0.89740 0.96528 0.91966 1.21025 0.99871 0.90539 1.04633 1.21883 0.95507 0.90190 1.03252 1.17148 0.84789 0.82854 0.77500 1.90714 1.68568 1.30321 1.51733 1.48240 1.07791 1.06656 1.68842 1.22704 1.00137 0.79889 0.99877 1.23546 0.92732 0.96669 1.00932 0.89567 1.22279 0.88032 1.04140 0.83199 1.44486 1.17540 1.46133 1.23690 1.19057 1.02252 1.16885 0.96411 0.90485 1.24753 0.96464 1.00139 0.99303 1.69607 1.09776 1.38318 1.39323 0.86141 0.77143 0.79177 0.82990 1.21153 1.21551 1.21291 1.21426 0.95202 0.92965 0.88558 1.22211 0.96184 0.93291 0.97427 1.21627 0.96732 1.00603 0.98943 1.22159 0.80041 0.97952 1.00265 1.68414 1.08078 1.27800 1.06828 1.22260 0.90308 0.96987 0.97758 1.20806 0.99057 0.92139 1.04152 0.89511 0.89574 0.90088 0.89569 0.91191 0.87555 0.92805 0.86382 0.97404 0.86132 0.93680 0.96576 0.93930 0.93168 0.91625 0.92966 0.90229 0.91808 0.89391 0.89708 0.89995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.80 9.78 36.01 0.35 -0.45 16 2 C 0.10 1.24 6.79 -82.28 -0.56 0.68 16 3 N -0.44 -6.23 10.34 -5.23 -0.05 -6.29 16 4 C 0.13 2.03 6.82 -82.04 -0.56 1.47 16 5 C -0.10 -1.36 8.88 36.01 0.32 -1.04 16 6 C 0.03 0.54 6.71 -82.84 -0.56 -0.02 16 7 C 0.59 10.53 7.81 -12.19 -0.10 10.43 16 8 O -0.54 -9.98 13.56 5.35 0.07 -9.91 16 9 N -0.59 -10.18 3.32 -172.59 -0.57 -10.75 16 10 C 0.10 1.62 5.74 -3.25 -0.02 1.60 16 11 C -0.12 -2.20 3.81 -87.61 -0.33 -2.53 16 12 H 0.09 1.52 7.88 -51.93 -0.41 1.11 16 13 C 0.15 3.58 5.75 -2.10 -0.01 3.57 16 14 N -0.60 -15.27 3.39 -169.80 -0.58 -15.85 16 15 C -0.22 -6.06 10.34 -15.06 -0.16 -6.22 16 16 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 17 C -0.01 -0.32 5.49 -17.43 -0.10 -0.42 16 18 N -0.92 -26.37 10.08 55.49 0.56 -25.81 16 19 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 C 0.15 3.11 6.37 -3.25 -0.02 3.09 16 24 C -0.09 -1.56 1.08 -152.65 -0.17 -1.72 16 25 C -0.12 -1.79 8.43 37.16 0.31 -1.48 16 26 C 0.12 1.93 5.97 -3.25 -0.02 1.91 16 27 N -0.39 -6.17 6.69 -5.88 -0.04 -6.21 16 28 C 0.07 0.90 6.79 -82.42 -0.56 0.34 16 29 C -0.10 -0.96 9.78 36.01 0.35 -0.61 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 0.46 5.94 -51.93 -0.31 0.15 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.11 1.48 5.84 -51.93 -0.30 1.18 16 36 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.12 2.11 4.74 -51.93 -0.25 1.86 16 38 H 0.01 0.21 7.50 -51.93 -0.39 -0.18 16 39 H 0.12 3.24 5.44 -51.93 -0.28 2.96 16 40 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 41 H 0.02 0.37 7.38 -51.93 -0.38 -0.01 16 42 H 0.04 0.88 7.82 -51.93 -0.41 0.47 16 43 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.08 1.36 7.26 -51.93 -0.38 0.98 16 47 H 0.06 0.91 7.87 -51.93 -0.41 0.50 16 48 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 49 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 50 H 0.08 0.50 5.94 -51.93 -0.31 0.19 16 LS Contribution 385.78 15.07 5.81 5.81 Total: -1.00 -32.33 385.78 -9.23 -41.56 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -7.60 Total: 1.88 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: -1.81 Total: 8.61 kcal Atomic # 7 Polarization: -64.22 SS G_CDS: -0.68 Total: -64.90 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.07 Total: -9.91 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.33 -9.23 -41.56 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091838269.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.038 kcal (2) G-P(sol) polarization free energy of solvation -32.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds