Wall clock time and date at job start Wed Apr 1 2020 04:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.32136 * 119.90126 * 2 1 4 4 C 1.32086 * 120.06707 * 179.97438 * 3 2 1 5 5 C 1.50699 * 120.05879 * 179.97438 * 4 3 2 6 6 C 1.39441 * 119.87414 * 0.02562 * 4 3 2 7 7 C 1.48152 * 120.09304 * 179.97438 * 6 4 3 8 8 O 1.21515 * 120.00544 * 354.24482 * 7 6 4 9 9 N 1.34782 * 119.99650 * 174.24260 * 7 6 4 10 10 C 1.47205 * 126.70384 * 0.02562 * 9 7 6 11 11 C 1.53777 * 106.42839 * 148.66013 * 10 9 7 12 12 H 1.08999 * 111.86538 * 140.64213 * 11 10 9 13 13 C 1.55895 * 109.55324 * 267.25505 * 11 10 9 14 14 N 1.47217 * 106.49017 * 131.62585 * 13 11 10 15 15 C 1.36939 * 126.69878 * 148.25875 * 14 13 11 16 16 H 1.08000 * 119.99742 * 179.97438 * 15 14 13 17 17 C 1.38810 * 120.00148 * 359.97438 * 15 14 13 18 18 N 1.31621 * 120.00031 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99971 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47071 * 59.99748 * 19 17 15 21 21 H 1.48500 * 109.47202 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.46875 * 300.00144 * 19 17 15 23 23 C 1.47213 * 106.59693 * 328.24184 * 14 13 11 24 24 C 1.53777 * 106.37963 * 31.26614 * 23 14 13 25 25 C 1.52995 * 111.85824 * 104.04670 * 24 23 14 26 26 C 1.47211 * 126.69999 * 179.97438 * 9 7 6 27 27 N 1.32995 * 119.80773 * 0.26764 * 6 4 3 28 28 C 1.31800 * 119.92553 * 359.45383 * 27 6 4 29 29 C 1.50706 * 119.93814 * 180.25009 * 28 27 6 30 30 H 1.09000 * 109.47291 * 89.99295 * 1 2 3 31 31 H 1.09005 * 109.47113 * 209.99759 * 1 2 3 32 32 H 1.08999 * 109.46691 * 329.99411 * 1 2 3 33 33 H 1.09007 * 109.47173 * 263.35937 * 5 4 3 34 34 H 1.09000 * 109.47377 * 23.36340 * 5 4 3 35 35 H 1.09004 * 109.47106 * 143.36691 * 5 4 3 36 36 H 1.09000 * 110.07752 * 267.91484 * 10 9 7 37 37 H 1.09001 * 110.07752 * 29.39894 * 10 9 7 38 38 H 1.08999 * 110.42747 * 12.13801 * 13 11 10 39 39 H 1.09000 * 109.65592 * 250.69551 * 13 11 10 40 40 H 0.97001 * 119.99585 * 180.02562 * 18 17 15 41 41 H 1.09003 * 110.06770 * 272.04097 * 23 14 13 42 42 H 1.08995 * 110.12227 * 150.52568 * 23 14 13 43 43 H 1.08994 * 109.47486 * 182.04949 * 25 24 23 44 44 H 1.09005 * 109.47400 * 302.04758 * 25 24 23 45 45 H 1.09000 * 109.46869 * 62.04487 * 25 24 23 46 46 H 1.08995 * 110.08135 * 330.54168 * 26 9 7 47 47 H 1.09004 * 110.07225 * 92.08179 * 26 9 7 48 48 H 1.09001 * 109.46673 * 270.29861 * 29 28 27 49 49 H 1.08998 * 109.46577 * 30.30083 * 29 28 27 50 50 H 1.08997 * 109.46902 * 150.29610 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1657 1.1455 0.0000 4 6 3.4866 1.1493 0.0005 5 6 4.2376 2.4558 -0.0001 6 6 4.1846 -0.0578 0.0005 7 6 5.6661 -0.0592 0.0005 8 8 6.2748 0.9872 -0.1050 9 7 6.3389 -1.2212 0.1176 10 6 5.7554 -2.5659 0.2527 11 6 6.7398 -3.5368 -0.4204 12 1 6.8350 -4.4691 0.1362 13 6 6.3312 -3.7446 -1.9104 14 7 7.5563 -3.5705 -2.7079 15 6 7.8636 -4.2010 -3.8840 16 1 8.7990 -3.9904 -4.3812 17 6 6.9730 -5.1106 -4.4373 18 7 5.8328 -5.3669 -3.8317 19 14 7.3919 -5.9700 -6.0421 20 1 8.6437 -6.7508 -5.8733 21 1 6.2846 -6.8858 -6.4170 22 1 7.5807 -4.9570 -7.1114 23 6 8.3863 -2.5862 -1.9942 24 6 8.0828 -2.7668 -0.4976 25 6 9.2091 -3.5068 0.2268 26 6 7.8008 -1.3936 0.1343 27 7 3.5166 -1.2078 -0.0054 28 6 2.1986 -1.2026 -0.0003 29 6 1.4414 -2.5056 -0.0013 30 1 -0.3634 0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5139 33 1 4.5222 2.7109 -1.0210 34 1 3.6007 3.2413 0.4067 35 1 5.1335 2.3602 0.6136 36 1 5.6410 -2.8200 1.3065 37 1 4.7884 -2.6063 -0.2486 38 1 5.5843 -3.0079 -2.2063 39 1 5.9368 -4.7517 -2.0454 40 1 5.2106 -6.0028 -4.2181 41 1 8.1237 -1.5765 -2.3100 42 1 9.4421 -2.7756 -2.1874 43 1 8.9385 -3.6454 1.2735 44 1 9.3640 -4.4795 -0.2402 45 1 10.1273 -2.9229 0.1630 46 1 8.2770 -0.6074 -0.4514 47 1 8.1684 -1.3713 1.1603 48 1 1.2595 -2.8193 -1.0293 49 1 2.0280 -3.2671 0.5127 50 1 0.4890 -2.3728 0.5119 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001091838269.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:34 Heat of formation + Delta-G solvation = 33.440561 kcal Electronic energy + Delta-G solvation = -31741.050738 eV Core-core repulsion = 27768.684190 eV Total energy + Delta-G solvation = -3972.366548 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.68607 -41.38967 -39.68887 -36.83703 -36.02991 -35.41262 -34.40479 -32.50794 -31.68789 -31.16328 -30.00631 -28.13252 -27.86802 -26.68055 -26.58468 -24.72587 -24.02332 -23.05631 -21.97351 -20.99530 -20.14764 -19.42013 -18.76561 -17.78950 -17.33943 -16.93373 -16.79014 -16.42345 -16.26985 -15.61818 -15.55455 -15.12134 -14.98503 -14.75911 -14.38952 -14.23141 -13.95762 -13.94433 -13.83659 -13.72546 -13.58494 -13.42961 -13.31279 -13.19520 -13.15847 -13.04809 -12.82076 -12.67011 -12.53047 -12.38599 -12.24884 -12.04266 -11.88151 -11.80766 -11.52511 -11.45418 -11.19957 -11.03433 -10.79167 -10.13621 -10.04124 -9.59792 -8.93074 -7.74574 -5.23706 -0.75152 -0.10732 1.45517 1.48481 1.50067 1.54771 1.78801 2.48202 2.52097 2.76757 2.88821 3.21721 3.29418 3.36538 3.54452 3.58815 3.80787 3.87572 3.90829 3.95528 4.14822 4.26751 4.31879 4.42150 4.53356 4.60640 4.63743 4.67163 4.69310 4.72311 4.74660 4.77104 4.83431 4.84648 4.91312 4.95209 5.02977 5.08406 5.11900 5.18449 5.22306 5.27625 5.35822 5.44597 5.47627 5.53722 5.61592 5.82385 6.06122 6.34891 6.37195 6.56178 6.90918 7.10340 7.75979 8.44716 9.23316 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010946 B = 0.003822 C = 0.003217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2557.420873 B = 7324.341083 C = 8701.447764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.111 3.889 3 N -0.456 5.456 4 C 0.125 3.875 5 C -0.096 4.096 6 C 0.001 3.999 7 C 0.583 3.417 8 O -0.553 6.553 9 N -0.592 5.592 10 C 0.106 3.894 11 C -0.108 4.108 12 H 0.103 0.897 13 C 0.158 3.842 14 N -0.617 5.617 15 C -0.240 4.240 16 H 0.078 0.922 17 C -0.062 4.062 18 N -0.944 5.944 19 Si 0.980 3.020 20 H -0.274 1.274 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.142 3.858 24 C -0.079 4.079 25 C -0.114 4.114 26 C 0.121 3.879 27 N -0.415 5.415 28 C 0.062 3.938 29 C -0.102 4.102 30 H 0.100 0.900 31 H 0.116 0.884 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.106 0.894 38 H -0.030 1.030 39 H 0.092 0.908 40 H 0.249 0.751 41 H -0.004 1.004 42 H 0.049 0.951 43 H 0.079 0.921 44 H 0.048 0.952 45 H 0.070 0.930 46 H 0.067 0.933 47 H 0.097 0.903 48 H 0.087 0.913 49 H 0.080 0.920 50 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.072 7.273 14.304 18.434 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.033 4.033 3 N -0.172 5.172 4 C -0.014 4.014 5 C -0.153 4.153 6 C -0.138 4.138 7 C 0.371 3.629 8 O -0.433 6.433 9 N -0.322 5.322 10 C -0.017 4.017 11 C -0.128 4.128 12 H 0.121 0.879 13 C 0.033 3.967 14 N -0.341 5.341 15 C -0.369 4.369 16 H 0.096 0.904 17 C -0.255 4.255 18 N -0.593 5.593 19 Si 0.808 3.192 20 H -0.200 1.200 21 H -0.216 1.216 22 H -0.211 1.211 23 C 0.016 3.984 24 C -0.081 4.081 25 C -0.171 4.171 26 C -0.001 4.001 27 N -0.132 5.132 28 C -0.082 4.082 29 C -0.159 4.159 30 H 0.118 0.882 31 H 0.134 0.866 32 H 0.107 0.893 33 H 0.098 0.902 34 H 0.108 0.892 35 H 0.114 0.886 36 H 0.101 0.899 37 H 0.124 0.876 38 H -0.012 1.012 39 H 0.110 0.890 40 H 0.059 0.941 41 H 0.013 0.987 42 H 0.067 0.933 43 H 0.098 0.902 44 H 0.067 0.933 45 H 0.089 0.911 46 H 0.086 0.914 47 H 0.115 0.885 48 H 0.106 0.894 49 H 0.099 0.901 50 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -8.780 7.777 14.061 18.311 hybrid contribution 0.364 -0.308 -1.452 1.528 sum -8.416 7.469 12.609 16.900 Atomic orbital electron populations 1.21038 0.83912 1.05992 1.05133 1.23195 1.00660 0.88116 0.91323 1.68394 1.07163 1.29830 1.11812 1.22479 0.90431 0.96604 0.91898 1.20945 0.99710 0.90564 1.04109 1.21747 0.94885 0.91152 1.06024 1.17472 0.85641 0.82717 0.77091 1.90687 1.69232 1.30799 1.52609 1.48343 1.08248 1.06741 1.68913 1.22601 0.98853 0.79180 1.01040 1.23399 0.93908 0.98228 0.97304 0.87862 1.22004 0.87023 1.01063 0.86643 1.44778 1.18621 1.46841 1.23841 1.19414 1.02515 1.17296 0.97685 0.90379 1.25571 0.96461 1.00926 1.02492 1.69868 1.10436 1.38588 1.40424 0.85138 0.77105 0.77939 0.79043 1.19985 1.21569 1.21107 1.21563 0.94891 0.90867 0.91033 1.22145 0.96639 0.94327 0.94957 1.21586 0.96229 0.99412 0.99915 1.22200 0.79687 0.96524 1.01721 1.68346 1.09635 1.27732 1.07529 1.22935 0.89650 0.98898 0.96753 1.20954 1.00235 0.90146 1.04572 0.88178 0.86609 0.89294 0.90193 0.89241 0.88565 0.89929 0.87624 1.01181 0.89024 0.94146 0.98654 0.93310 0.90215 0.93266 0.91103 0.91415 0.88529 0.89432 0.90123 0.86142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.23 9.78 71.24 0.70 -0.53 16 2 C 0.11 2.48 6.79 42.63 0.29 2.77 16 3 N -0.46 -12.46 10.34 -170.47 -1.76 -14.22 16 4 C 0.12 3.81 6.82 42.81 0.29 4.10 16 5 C -0.10 -2.58 8.88 71.24 0.63 -1.95 16 6 C 0.00 0.03 6.71 41.89 0.28 0.31 16 7 C 0.58 21.34 7.81 86.88 0.68 22.02 16 8 O -0.55 -21.33 13.56 -3.76 -0.05 -21.38 16 9 N -0.59 -20.61 3.32 -818.25 -2.72 -23.33 16 10 C 0.11 3.50 5.74 86.51 0.50 4.00 16 11 C -0.11 -3.99 3.81 -8.85 -0.03 -4.03 16 12 H 0.10 3.49 7.88 -2.39 -0.02 3.47 16 13 C 0.16 7.91 5.75 87.24 0.50 8.41 16 14 N -0.62 -32.75 3.39 -691.11 -2.34 -35.09 16 15 C -0.24 -13.74 10.34 84.03 0.87 -12.87 16 16 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 17 C -0.06 -3.52 5.49 84.86 0.47 -3.05 16 18 N -0.94 -55.69 10.08 21.65 0.22 -55.47 16 19 Si 0.98 45.77 29.55 68.60 2.03 47.80 16 20 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 21 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 22 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 23 C 0.14 6.22 6.37 86.51 0.55 6.77 16 24 C -0.08 -2.69 1.08 -50.98 -0.06 -2.74 16 25 C -0.11 -3.07 8.43 71.98 0.61 -2.46 16 26 C 0.12 3.82 5.97 86.50 0.52 4.34 16 27 N -0.42 -13.11 6.69 -172.52 -1.15 -14.27 16 28 C 0.06 1.54 6.79 42.68 0.29 1.83 16 29 C -0.10 -1.69 9.78 71.24 0.70 -0.99 16 30 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.12 0.69 5.94 -2.38 -0.01 0.68 16 32 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.08 2.21 8.14 -2.38 -0.02 2.19 16 34 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.10 2.78 5.84 -2.39 -0.01 2.77 16 36 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.11 3.86 4.74 -2.39 -0.01 3.85 16 38 H -0.03 -1.67 7.50 -2.39 -0.02 -1.69 16 39 H 0.09 5.15 5.44 -2.39 -0.01 5.13 16 40 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 41 H 0.00 -0.20 7.38 -2.39 -0.02 -0.22 16 42 H 0.05 2.03 7.82 -2.39 -0.02 2.01 16 43 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 45 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.07 2.31 7.26 -2.39 -0.02 2.29 16 47 H 0.10 2.46 7.87 -2.38 -0.02 2.44 16 48 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 49 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 50 H 0.12 1.00 5.94 -2.39 -0.01 0.99 16 Total: -1.00 -74.17 385.78 2.95 -71.22 By element: Atomic # 1 Polarization: 17.84 SS G_CDS: 0.96 Total: 18.80 kcal Atomic # 6 Polarization: 18.16 SS G_CDS: 7.78 Total: 25.94 kcal Atomic # 7 Polarization: -134.62 SS G_CDS: -7.76 Total: -142.38 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: -0.05 Total: -21.38 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -74.17 2.95 -71.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001091838269.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.658 kcal (2) G-P(sol) polarization free energy of solvation -74.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.218 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds