Wall clock time and date at job start Wed Apr 1 2020 03:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38807 * 120.42508 * 2 1 4 4 C 1.39495 * 118.26477 * 179.97438 * 3 2 1 5 5 C 1.48460 * 120.54868 * 180.02562 * 4 3 2 6 6 O 1.21468 * 119.99965 * 359.97438 * 5 4 3 7 7 N 1.34781 * 119.99776 * 179.97438 * 5 4 3 8 8 C 1.46500 * 119.99768 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.46745 * 179.97438 * 8 7 5 10 10 C 1.53356 * 111.23077 * 297.62714 * 9 8 7 11 11 C 1.55535 * 105.83836 * 241.97655 * 10 9 8 12 12 C 1.54682 * 104.35151 * 334.35616 * 11 10 9 13 13 C 1.54575 * 111.31430 * 177.45312 * 9 8 7 14 14 H 1.08995 * 111.92762 * 18.71225 * 13 9 8 15 15 N 1.46891 * 107.36648 * 255.61794 * 13 9 8 16 16 C 1.36941 * 125.24848 * 181.65654 * 15 13 9 17 17 H 1.07996 * 120.00545 * 359.97438 * 16 15 13 18 18 C 1.38815 * 119.99627 * 179.97438 * 16 15 13 19 19 N 1.31616 * 120.00281 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99924 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46954 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47542 * 119.99640 * 20 18 16 23 23 H 1.48500 * 109.47177 * 240.00068 * 20 18 16 24 24 C 1.46733 * 109.49982 * 1.65542 * 15 13 9 25 25 C 1.53865 * 111.26007 * 61.01562 * 9 8 7 26 26 N 1.33099 * 118.90216 * 0.02562 * 4 3 2 27 27 C 1.31554 * 120.73852 * 359.97438 * 26 4 3 28 28 C 1.50700 * 119.04480 * 179.72051 * 27 26 4 29 29 N 1.31915 * 121.91480 * 0.02562 * 27 26 4 30 30 H 1.08999 * 109.47205 * 90.00507 * 1 2 3 31 31 H 1.09007 * 109.46738 * 209.99849 * 1 2 3 32 32 H 1.08997 * 109.47636 * 329.99831 * 1 2 3 33 33 H 1.08001 * 120.86931 * 359.97438 * 3 2 1 34 34 H 0.96996 * 119.99896 * 359.97438 * 7 5 4 35 35 H 1.09000 * 109.47012 * 299.99350 * 8 7 5 36 36 H 1.08999 * 109.46829 * 59.99704 * 8 7 5 37 37 H 1.09004 * 110.05416 * 1.98197 * 10 9 8 38 38 H 1.08996 * 110.05781 * 123.47389 * 10 9 8 39 39 H 1.08999 * 110.54435 * 215.54574 * 11 10 9 40 40 H 1.09001 * 110.23806 * 93.01816 * 11 10 9 41 41 H 1.09000 * 110.61249 * 278.64916 * 12 11 10 42 42 H 1.08997 * 110.74884 * 155.73353 * 12 11 10 43 43 H 0.97004 * 120.00536 * 180.02562 * 19 18 16 44 44 H 1.09000 * 110.04714 * 221.96508 * 24 15 13 45 45 H 1.09010 * 110.08176 * 100.53177 * 24 15 13 46 46 H 1.09006 * 110.57042 * 212.51519 * 25 9 8 47 47 H 1.08999 * 110.57262 * 335.38310 * 25 9 8 48 48 H 1.08993 * 109.47137 * 90.00006 * 28 27 26 49 49 H 1.09000 * 109.47279 * 210.00395 * 28 27 26 50 50 H 1.08996 * 109.46947 * 330.00031 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1969 0.0000 4 6 3.6039 1.1443 0.0005 5 6 4.4061 2.3935 0.0011 6 8 3.8492 3.4730 0.0007 7 7 5.7524 2.3298 0.0022 8 6 6.5440 3.5625 0.0022 9 6 8.0333 3.2120 0.0042 10 6 8.4206 2.4405 1.2716 11 6 9.4604 3.3311 2.0097 12 6 10.0982 4.1850 0.8887 13 6 8.9098 4.4836 -0.0597 14 1 8.3548 5.3756 0.2307 15 7 9.4330 4.5872 -1.4284 16 6 10.2800 5.5644 -1.8789 17 1 10.6146 6.3409 -1.2071 18 6 10.7084 5.5569 -3.1993 19 7 10.3011 4.6103 -4.0180 20 14 11.8644 6.8895 -3.8137 21 1 12.1713 7.8283 -2.7048 22 1 13.1226 6.2681 -4.2994 23 1 11.2176 7.6318 -4.9254 24 6 8.9080 3.4820 -2.2384 25 6 8.4187 2.4070 -1.2492 26 7 4.2028 -0.0443 0.0005 27 6 3.4956 -1.1536 0.0005 28 6 4.2131 -2.4787 -0.0059 29 7 2.1765 -1.1396 0.0000 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8901 0.5139 32 1 -0.3634 0.8899 0.5138 33 1 1.6912 2.1442 -0.0004 34 1 6.1971 1.4677 0.0029 35 1 6.3088 4.1453 -0.8883 36 1 6.3073 4.1462 0.8917 37 1 7.5396 2.2733 1.8914 38 1 8.8765 1.4872 1.0043 39 1 10.2158 2.7141 2.4962 40 1 8.9605 3.9695 2.7382 41 1 10.8716 3.6197 0.3687 42 1 10.5079 5.1103 1.2937 43 1 10.6008 4.6048 -4.9406 44 1 9.6965 3.0757 -2.8719 45 1 8.0776 3.8299 -2.8529 46 1 9.2194 1.7033 -1.0212 47 1 7.5506 1.8839 -1.6503 48 1 4.3903 -2.8009 1.0201 49 1 3.6015 -3.2207 -0.5193 50 1 5.1666 -2.3731 -0.5234 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001094535825.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:14 Heat of formation + Delta-G solvation = 28.346164 kcal Electronic energy + Delta-G solvation = -30541.253407 eV Core-core repulsion = 26568.665950 eV Total energy + Delta-G solvation = -3972.587458 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.57121 -39.97054 -38.83882 -35.13486 -34.69021 -33.95639 -33.70962 -31.69687 -30.34022 -29.59389 -28.51394 -28.00294 -26.68963 -25.48372 -23.87398 -23.63675 -22.53560 -20.94588 -20.05480 -19.85083 -18.74944 -18.08790 -17.41021 -16.74826 -15.97932 -15.80461 -15.57350 -15.18217 -15.08375 -14.81289 -14.60719 -14.17269 -13.78176 -13.69044 -13.52552 -13.43013 -13.15357 -12.94350 -12.84882 -12.61270 -12.60870 -12.46871 -11.83983 -11.52156 -11.28674 -11.24931 -11.12739 -10.82185 -10.81209 -10.75361 -10.65176 -10.51474 -10.26160 -10.08276 -9.95621 -9.84371 -9.71631 -9.58487 -9.57471 -9.45016 -8.95292 -8.58682 -6.80295 -5.64520 -3.03467 0.25551 0.58333 2.61160 2.90556 3.40779 3.46638 3.48819 3.50533 3.52110 3.61477 4.22553 4.50493 4.58480 4.59514 4.88890 4.97742 4.99738 5.03312 5.09410 5.10919 5.17935 5.24782 5.42247 5.49524 5.51686 5.56167 5.56659 5.64004 5.75897 5.84726 5.88093 6.00789 6.04587 6.07630 6.09499 6.17234 6.32265 6.34712 6.43963 6.47064 6.54615 6.61880 6.71071 6.77076 6.86631 7.12984 7.44024 7.57257 7.70053 7.71598 7.88661 8.07821 8.36962 9.25990 9.87087 10.50386 11.41067 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016291 B = 0.002533 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.283134 B =11049.747070 C =11411.892957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.179 3.821 3 C -0.179 4.179 4 C 0.143 3.857 5 C 0.565 3.435 6 O -0.527 6.527 7 N -0.695 5.695 8 C 0.137 3.863 9 C -0.082 4.082 10 C -0.111 4.111 11 C -0.122 4.122 12 C -0.130 4.130 13 C 0.173 3.827 14 H 0.048 0.952 15 N -0.596 5.596 16 C -0.219 4.219 17 H 0.077 0.923 18 C -0.011 4.011 19 N -0.922 5.922 20 Si 0.911 3.089 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.292 1.292 24 C 0.163 3.837 25 C -0.133 4.133 26 N -0.499 5.499 27 C 0.321 3.679 28 C -0.085 4.085 29 N -0.510 5.510 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.160 0.840 34 H 0.412 0.588 35 H 0.077 0.923 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.072 0.928 42 H 0.054 0.946 43 H 0.250 0.750 44 H 0.093 0.907 45 H 0.012 0.988 46 H 0.062 0.938 47 H 0.056 0.944 48 H 0.087 0.913 49 H 0.087 0.913 50 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.064 -13.377 11.094 22.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.031 3.969 3 C -0.202 4.202 4 C -0.004 4.004 5 C 0.347 3.653 6 O -0.402 6.402 7 N -0.346 5.346 8 C 0.015 3.985 9 C -0.083 4.083 10 C -0.149 4.149 11 C -0.160 4.160 12 C -0.170 4.170 13 C 0.065 3.935 14 H 0.065 0.935 15 N -0.320 5.320 16 C -0.347 4.347 17 H 0.095 0.905 18 C -0.207 4.207 19 N -0.570 5.570 20 Si 0.742 3.258 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C 0.038 3.962 25 C -0.172 4.172 26 N -0.217 5.217 27 C 0.054 3.946 28 C -0.144 4.144 29 N -0.226 5.226 30 H 0.107 0.893 31 H 0.103 0.897 32 H 0.103 0.897 33 H 0.178 0.822 34 H 0.248 0.752 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.090 0.910 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.111 0.889 45 H 0.030 0.970 46 H 0.080 0.920 47 H 0.075 0.925 48 H 0.106 0.894 49 H 0.106 0.894 50 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -14.824 -13.338 10.868 22.711 hybrid contribution 0.352 1.142 -0.443 1.275 sum -14.472 -12.196 10.425 21.607 Atomic orbital electron populations 1.20813 0.87150 1.04350 1.04041 1.21835 0.97875 0.87621 0.89564 1.22789 0.94674 1.01360 1.01404 1.21721 0.92127 0.92468 0.94110 1.17762 0.82684 0.86860 0.77967 1.90802 1.71358 1.28153 1.49926 1.45935 1.05208 1.11499 1.71911 1.21491 0.89319 0.85133 1.02602 1.21873 0.92555 0.97699 0.96134 1.22379 0.98460 0.98463 0.95582 1.22519 0.97600 0.97994 0.97879 1.22985 0.99344 0.98778 0.95861 1.21524 0.91506 0.93173 0.87318 0.93480 1.44345 1.53622 1.29162 1.04848 1.19080 1.18688 1.02834 0.94103 0.90471 1.24778 1.00814 0.98840 0.96232 1.69895 1.48272 1.33797 1.05058 0.86048 0.80276 0.80921 0.78562 1.20560 1.21857 1.21867 1.21435 0.97840 0.85695 0.91235 1.22801 0.99677 0.98847 0.95840 1.68192 1.41639 0.98107 1.13781 1.23252 0.86444 0.94606 0.90313 1.20607 1.00231 0.89422 1.04120 1.68060 1.09802 1.30526 1.14237 0.89321 0.89676 0.89734 0.82250 0.75164 0.90480 0.91252 0.92282 0.91660 0.92491 0.92427 0.90954 0.92709 0.93909 0.88919 0.97020 0.91959 0.92519 0.89407 0.89450 0.89152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.62 10.22 36.00 0.37 -0.26 16 2 C 0.18 1.75 6.83 -82.24 -0.56 1.19 16 3 C -0.18 -1.99 9.41 -38.90 -0.37 -2.36 16 4 C 0.14 1.87 6.79 -82.64 -0.56 1.31 16 5 C 0.56 8.48 7.83 -12.05 -0.09 8.38 16 6 O -0.53 -9.27 16.42 5.39 0.09 -9.18 16 7 N -0.69 -9.92 4.64 -61.06 -0.28 -10.20 16 8 C 0.14 2.20 4.43 -4.04 -0.02 2.18 16 9 C -0.08 -1.34 0.53 -153.05 -0.08 -1.42 16 10 C -0.11 -1.53 5.75 -25.20 -0.14 -1.67 16 11 C -0.12 -1.72 6.88 -24.50 -0.17 -1.89 16 12 C -0.13 -2.31 6.23 -24.82 -0.15 -2.47 16 13 C 0.17 3.43 3.60 -65.86 -0.24 3.19 16 14 H 0.05 0.96 7.92 -51.93 -0.41 0.55 16 15 N -0.60 -14.64 2.99 -162.43 -0.49 -15.12 16 16 C -0.22 -5.94 9.96 -15.06 -0.15 -6.09 16 17 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 18 C -0.01 -0.31 5.48 -17.43 -0.10 -0.41 16 19 N -0.92 -26.76 10.14 55.49 0.56 -26.20 16 20 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 24 C 0.16 3.88 5.65 -3.36 -0.02 3.86 16 25 C -0.13 -2.41 5.77 -25.72 -0.15 -2.56 16 26 N -0.50 -6.13 9.60 -7.32 -0.07 -6.20 16 27 C 0.32 3.50 7.64 -157.30 -1.20 2.30 16 28 C -0.09 -0.62 10.31 36.01 0.37 -0.25 16 29 N -0.51 -5.53 10.25 -7.00 -0.07 -5.61 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.45 8.14 -51.92 -0.42 0.03 16 32 H 0.08 0.37 8.10 -51.93 -0.42 -0.05 16 33 H 0.16 1.58 7.74 -52.49 -0.41 1.18 16 34 H 0.41 5.38 6.94 -40.82 -0.28 5.10 16 35 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 36 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.06 0.74 7.51 -51.93 -0.39 0.35 16 38 H 0.06 0.86 7.28 -51.93 -0.38 0.48 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 41 H 0.07 1.44 8.06 -51.93 -0.42 1.02 16 42 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 43 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 44 H 0.09 2.50 6.16 -51.93 -0.32 2.18 16 45 H 0.01 0.31 8.14 -51.92 -0.42 -0.11 16 46 H 0.06 1.09 7.42 -51.93 -0.39 0.71 16 47 H 0.06 0.95 7.03 -51.93 -0.36 0.58 16 48 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 49 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 50 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 398.07 15.07 6.00 6.00 Total: -1.00 -31.88 398.07 -10.52 -42.40 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -7.97 Total: 4.01 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: -3.26 Total: 3.03 kcal Atomic # 7 Polarization: -62.98 SS G_CDS: -0.35 Total: -63.33 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: 0.09 Total: -9.18 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -31.88 -10.52 -42.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094535825.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.745 kcal (2) G-P(sol) polarization free energy of solvation -31.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds