Wall clock time and date at job start Wed Apr 1 2020 03:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38807 * 120.42508 * 2 1 4 4 C 1.39495 * 118.26477 * 179.97438 * 3 2 1 5 5 C 1.48460 * 120.54868 * 180.02562 * 4 3 2 6 6 O 1.21468 * 119.99965 * 359.97438 * 5 4 3 7 7 N 1.34781 * 119.99776 * 179.97438 * 5 4 3 8 8 C 1.46500 * 119.99768 * 179.97438 * 7 5 4 9 9 C 1.52997 * 109.46745 * 179.97438 * 8 7 5 10 10 C 1.53356 * 111.23077 * 297.62714 * 9 8 7 11 11 C 1.55535 * 105.83836 * 241.97655 * 10 9 8 12 12 C 1.54682 * 104.35151 * 334.35616 * 11 10 9 13 13 C 1.54575 * 111.31430 * 177.45312 * 9 8 7 14 14 H 1.08995 * 111.92762 * 18.71225 * 13 9 8 15 15 N 1.46891 * 107.36648 * 255.61794 * 13 9 8 16 16 C 1.36941 * 125.24848 * 181.65654 * 15 13 9 17 17 H 1.07996 * 120.00545 * 359.97438 * 16 15 13 18 18 C 1.38815 * 119.99627 * 179.97438 * 16 15 13 19 19 N 1.31616 * 120.00281 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99924 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.46954 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47542 * 119.99640 * 20 18 16 23 23 H 1.48500 * 109.47177 * 240.00068 * 20 18 16 24 24 C 1.46733 * 109.49982 * 1.65542 * 15 13 9 25 25 C 1.53865 * 111.26007 * 61.01562 * 9 8 7 26 26 N 1.33099 * 118.90216 * 0.02562 * 4 3 2 27 27 C 1.31554 * 120.73852 * 359.97438 * 26 4 3 28 28 C 1.50700 * 119.04480 * 179.72051 * 27 26 4 29 29 N 1.31915 * 121.91480 * 0.02562 * 27 26 4 30 30 H 1.08999 * 109.47205 * 90.00507 * 1 2 3 31 31 H 1.09007 * 109.46738 * 209.99849 * 1 2 3 32 32 H 1.08997 * 109.47636 * 329.99831 * 1 2 3 33 33 H 1.08001 * 120.86931 * 359.97438 * 3 2 1 34 34 H 0.96996 * 119.99896 * 359.97438 * 7 5 4 35 35 H 1.09000 * 109.47012 * 299.99350 * 8 7 5 36 36 H 1.08999 * 109.46829 * 59.99704 * 8 7 5 37 37 H 1.09004 * 110.05416 * 1.98197 * 10 9 8 38 38 H 1.08996 * 110.05781 * 123.47389 * 10 9 8 39 39 H 1.08999 * 110.54435 * 215.54574 * 11 10 9 40 40 H 1.09001 * 110.23806 * 93.01816 * 11 10 9 41 41 H 1.09000 * 110.61249 * 278.64916 * 12 11 10 42 42 H 1.08997 * 110.74884 * 155.73353 * 12 11 10 43 43 H 0.97004 * 120.00536 * 180.02562 * 19 18 16 44 44 H 1.09000 * 110.04714 * 221.96508 * 24 15 13 45 45 H 1.09010 * 110.08176 * 100.53177 * 24 15 13 46 46 H 1.09006 * 110.57042 * 212.51519 * 25 9 8 47 47 H 1.08999 * 110.57262 * 335.38310 * 25 9 8 48 48 H 1.08993 * 109.47137 * 90.00006 * 28 27 26 49 49 H 1.09000 * 109.47279 * 210.00395 * 28 27 26 50 50 H 1.08996 * 109.46947 * 330.00031 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1969 0.0000 4 6 3.6039 1.1443 0.0005 5 6 4.4061 2.3935 0.0011 6 8 3.8492 3.4730 0.0007 7 7 5.7524 2.3298 0.0022 8 6 6.5440 3.5625 0.0022 9 6 8.0333 3.2120 0.0042 10 6 8.4206 2.4405 1.2716 11 6 9.4604 3.3311 2.0097 12 6 10.0982 4.1850 0.8887 13 6 8.9098 4.4836 -0.0597 14 1 8.3548 5.3756 0.2307 15 7 9.4330 4.5872 -1.4284 16 6 10.2800 5.5644 -1.8789 17 1 10.6146 6.3409 -1.2071 18 6 10.7084 5.5569 -3.1993 19 7 10.3011 4.6103 -4.0180 20 14 11.8644 6.8895 -3.8137 21 1 12.1713 7.8283 -2.7048 22 1 13.1226 6.2681 -4.2994 23 1 11.2176 7.6318 -4.9254 24 6 8.9080 3.4820 -2.2384 25 6 8.4187 2.4070 -1.2492 26 7 4.2028 -0.0443 0.0005 27 6 3.4956 -1.1536 0.0005 28 6 4.2131 -2.4787 -0.0059 29 7 2.1765 -1.1396 0.0000 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8901 0.5139 32 1 -0.3634 0.8899 0.5138 33 1 1.6912 2.1442 -0.0004 34 1 6.1971 1.4677 0.0029 35 1 6.3088 4.1453 -0.8883 36 1 6.3073 4.1462 0.8917 37 1 7.5396 2.2733 1.8914 38 1 8.8765 1.4872 1.0043 39 1 10.2158 2.7141 2.4962 40 1 8.9605 3.9695 2.7382 41 1 10.8716 3.6197 0.3687 42 1 10.5079 5.1103 1.2937 43 1 10.6008 4.6048 -4.9406 44 1 9.6965 3.0757 -2.8719 45 1 8.0776 3.8299 -2.8529 46 1 9.2194 1.7033 -1.0212 47 1 7.5506 1.8839 -1.6503 48 1 4.3903 -2.8009 1.0201 49 1 3.6015 -3.2207 -0.5193 50 1 5.1666 -2.3731 -0.5234 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001094535825.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:12 Heat of formation + Delta-G solvation = 8.996070 kcal Electronic energy + Delta-G solvation = -30542.092490 eV Core-core repulsion = 26568.665950 eV Total energy + Delta-G solvation = -3973.426541 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.43960 -41.31909 -40.15531 -36.44851 -35.82069 -35.33383 -34.54604 -33.45296 -32.03560 -30.17982 -29.51519 -29.17078 -28.34945 -26.66398 -25.72054 -24.83391 -23.24999 -22.29169 -21.62515 -21.21899 -19.94890 -19.31285 -18.88857 -18.17031 -16.97946 -16.88010 -16.82420 -16.64218 -16.29351 -16.19494 -15.74140 -15.57628 -15.15878 -14.82888 -14.57772 -14.41664 -14.26777 -14.20532 -14.09560 -13.46541 -13.34038 -13.28258 -13.17272 -13.09200 -12.93133 -12.87406 -12.65096 -12.44206 -12.06080 -11.98703 -11.88313 -11.76841 -11.63586 -11.62245 -11.50775 -11.39740 -11.31747 -11.06095 -10.68989 -10.52229 -10.46353 -10.21424 -8.83291 -7.76899 -5.17280 -0.66992 -0.19860 1.45104 1.45799 1.54180 1.55826 1.78585 2.50030 2.62927 2.69908 2.87089 3.33406 3.33965 3.51415 3.64198 3.67879 3.70227 3.86988 3.95288 4.24306 4.28985 4.34504 4.35493 4.42873 4.52221 4.55661 4.65567 4.68131 4.69388 4.70700 4.75734 4.83937 4.86168 4.90513 4.92622 5.01980 5.14561 5.15490 5.16731 5.21001 5.31286 5.38147 5.39447 5.44770 5.52640 5.60935 5.70982 5.73183 5.86463 6.29972 6.31943 6.85131 6.95054 7.14898 7.84615 8.46033 9.27157 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016291 B = 0.002533 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.283134 B =11049.747070 C =11411.892957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.182 3.818 3 C -0.184 4.184 4 C 0.124 3.876 5 C 0.565 3.435 6 O -0.559 6.559 7 N -0.686 5.686 8 C 0.148 3.852 9 C -0.068 4.068 10 C -0.102 4.102 11 C -0.110 4.110 12 C -0.124 4.124 13 C 0.158 3.842 14 H 0.041 0.959 15 N -0.614 5.614 16 C -0.225 4.225 17 H 0.080 0.920 18 C -0.070 4.070 19 N -0.951 5.951 20 Si 0.974 3.026 21 H -0.266 1.266 22 H -0.292 1.292 23 H -0.297 1.297 24 C 0.169 3.831 25 C -0.117 4.117 26 N -0.510 5.510 27 C 0.311 3.689 28 C -0.083 4.083 29 N -0.517 5.517 30 H 0.102 0.898 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.167 0.833 34 H 0.420 0.580 35 H 0.042 0.958 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.073 0.927 41 H 0.048 0.952 42 H 0.052 0.948 43 H 0.244 0.756 44 H 0.057 0.943 45 H -0.028 1.028 46 H 0.075 0.925 47 H 0.070 0.930 48 H 0.103 0.897 49 H 0.098 0.902 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.009 -15.051 13.485 25.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.034 3.966 3 C -0.207 4.207 4 C -0.023 4.023 5 C 0.349 3.651 6 O -0.437 6.437 7 N -0.337 5.337 8 C 0.024 3.976 9 C -0.069 4.069 10 C -0.140 4.140 11 C -0.148 4.148 12 C -0.164 4.164 13 C 0.051 3.949 14 H 0.058 0.942 15 N -0.338 5.338 16 C -0.354 4.354 17 H 0.098 0.902 18 C -0.263 4.263 19 N -0.601 5.601 20 Si 0.803 3.197 21 H -0.191 1.191 22 H -0.219 1.219 23 H -0.224 1.224 24 C 0.044 3.956 25 C -0.155 4.155 26 N -0.229 5.229 27 C 0.044 3.956 28 C -0.141 4.141 29 N -0.234 5.234 30 H 0.120 0.880 31 H 0.112 0.888 32 H 0.120 0.880 33 H 0.184 0.816 34 H 0.258 0.742 35 H 0.061 0.939 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.053 0.947 44 H 0.075 0.925 45 H -0.010 1.010 46 H 0.094 0.906 47 H 0.089 0.911 48 H 0.122 0.878 49 H 0.117 0.883 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -15.761 -15.034 13.307 25.524 hybrid contribution 0.566 1.669 -1.201 2.133 sum -15.196 -13.364 12.106 23.581 Atomic orbital electron populations 1.20957 0.84290 1.05661 1.05192 1.22447 0.99616 0.86778 0.87805 1.22963 0.94040 1.02383 1.01307 1.21487 0.92671 0.92006 0.96104 1.18074 0.82718 0.87306 0.76956 1.90778 1.71923 1.29589 1.51377 1.45778 1.05085 1.11133 1.71714 1.21234 0.89291 0.85678 1.01379 1.21753 0.92106 0.96043 0.96976 1.22356 0.99383 0.98375 0.93879 1.22470 0.97903 0.97761 0.96685 1.22809 0.97816 0.99241 0.96492 1.21822 0.93052 0.94617 0.85413 0.94162 1.44600 1.53350 1.28880 1.06939 1.19415 1.18464 1.03251 0.94278 0.90219 1.25578 1.02872 1.01136 0.96667 1.70145 1.49660 1.35476 1.04845 0.85058 0.78086 0.78598 0.77927 1.19071 1.21903 1.22446 1.21160 0.95282 0.87056 0.92089 1.22625 1.00440 0.97359 0.95088 1.68177 1.41975 0.98126 1.14591 1.23947 0.86841 0.95310 0.89462 1.20737 1.00225 0.87854 1.05312 1.68195 1.09873 1.30847 1.14472 0.88015 0.88804 0.87989 0.81571 0.74200 0.93931 0.90398 0.90093 0.90234 0.90285 0.90781 0.93287 0.92903 0.94676 0.92461 1.01005 0.90647 0.91095 0.87847 0.88311 0.88729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.95 10.22 71.24 0.73 -0.22 16 2 C 0.18 3.22 6.83 42.64 0.29 3.51 16 3 C -0.18 -3.89 9.41 22.71 0.21 -3.67 16 4 C 0.12 3.14 6.79 41.98 0.29 3.42 16 5 C 0.57 16.82 7.83 86.97 0.68 17.50 16 6 O -0.56 -19.86 16.42 -3.62 -0.06 -19.92 16 7 N -0.69 -19.01 4.64 -465.39 -2.16 -21.17 16 8 C 0.15 4.69 4.43 86.38 0.38 5.07 16 9 C -0.07 -2.16 0.53 -51.24 -0.03 -2.19 16 10 C -0.10 -2.47 5.75 31.59 0.18 -2.29 16 11 C -0.11 -2.73 6.88 32.04 0.22 -2.51 16 12 C -0.12 -4.28 6.23 31.83 0.20 -4.08 16 13 C 0.16 6.27 3.60 46.12 0.17 6.44 16 14 H 0.04 1.66 7.92 -2.39 -0.02 1.64 16 15 N -0.61 -31.22 2.99 -667.80 -1.99 -33.22 16 16 C -0.22 -12.59 9.96 84.03 0.84 -11.76 16 17 H 0.08 4.31 7.83 -2.91 -0.02 4.28 16 18 C -0.07 -4.05 5.48 84.86 0.47 -3.58 16 19 N -0.95 -57.86 10.14 21.65 0.22 -57.64 16 20 Si 0.97 46.63 29.55 68.60 2.03 48.66 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 22 H -0.29 -13.89 7.11 99.48 0.71 -13.19 16 23 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 24 C 0.17 8.48 5.65 86.70 0.49 8.97 16 25 C -0.12 -4.22 5.77 31.25 0.18 -4.04 16 26 N -0.51 -11.85 9.60 -177.08 -1.70 -13.55 16 27 C 0.31 6.23 7.64 138.79 1.06 7.29 16 28 C -0.08 -1.02 10.31 71.24 0.73 -0.29 16 29 N -0.52 -10.22 10.25 -176.05 -1.81 -12.03 16 30 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.09 0.73 8.14 -2.38 -0.02 0.71 16 32 H 0.10 0.60 8.10 -2.39 -0.02 0.58 16 33 H 0.17 3.17 7.74 -2.91 -0.02 3.15 16 34 H 0.42 10.26 6.94 -92.71 -0.64 9.62 16 35 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.08 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.08 1.68 7.51 -2.38 -0.02 1.66 16 38 H 0.08 1.77 7.28 -2.39 -0.02 1.75 16 39 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.05 1.92 8.06 -2.39 -0.02 1.90 16 42 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.24 14.46 8.31 -92.71 -0.77 13.69 16 44 H 0.06 3.27 6.16 -2.39 -0.01 3.26 16 45 H -0.03 -1.59 8.14 -2.38 -0.02 -1.61 16 46 H 0.07 2.55 7.42 -2.38 -0.02 2.54 16 47 H 0.07 2.35 7.03 -2.39 -0.02 2.34 16 48 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 49 H 0.10 0.98 8.14 -2.39 -0.02 0.97 16 50 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 Total: -1.00 -73.12 398.07 1.92 -71.19 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 0.31 Total: 20.10 kcal Atomic # 6 Polarization: 10.48 SS G_CDS: 7.09 Total: 17.57 kcal Atomic # 7 Polarization: -130.16 SS G_CDS: -7.44 Total: -137.60 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.06 Total: -19.92 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -73.12 1.92 -71.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001094535825.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.190 kcal (2) G-P(sol) polarization free energy of solvation -73.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds