Wall clock time and date at job start Wed Apr 1 2020 03:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34848 * 125.96401 * 2 1 4 4 N 1.36312 * 106.69222 * 179.97438 * 3 2 1 5 5 C 1.35426 * 107.39555 * 0.05525 * 4 3 2 6 6 N 1.30089 * 108.62963 * 359.93158 * 5 4 3 7 7 C 1.51047 * 123.98019 * 179.91005 * 5 4 3 8 8 C 1.53400 * 108.21237 * 344.08086 * 7 5 4 9 9 H 1.09007 * 109.50738 * 288.88724 * 8 7 5 10 10 C 1.50700 * 109.50971 * 168.79175 * 8 7 5 11 11 O 1.21275 * 119.99814 * 239.99928 * 10 8 7 12 12 N 1.34780 * 119.99869 * 60.00350 * 10 8 7 13 13 C 1.46497 * 119.99940 * 180.02562 * 12 10 8 14 14 H 1.09002 * 110.56091 * 36.96218 * 13 12 10 15 15 C 1.54854 * 110.62738 * 160.03861 * 13 12 10 16 16 C 1.55842 * 103.44576 * 118.48866 * 15 13 12 17 17 H 1.08999 * 116.12791 * 159.14841 * 16 15 13 18 18 C 1.55844 * 105.06424 * 288.17633 * 16 15 13 19 19 C 1.54854 * 103.44622 * 71.82401 * 18 16 15 20 20 C 1.55837 * 103.44393 * 0.02562 * 19 18 16 21 21 H 1.09011 * 115.55679 * 159.56841 * 20 19 18 22 22 N 1.50235 * 101.05308 * 32.93798 * 20 19 18 23 23 C 1.36937 * 130.83887 * 126.00748 * 22 20 19 24 24 H 1.08005 * 120.00149 * 359.97438 * 23 22 20 25 25 C 1.38810 * 120.00016 * 180.02562 * 23 22 20 26 26 N 1.31613 * 120.00077 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 119.99846 * 180.02562 * 25 23 22 28 28 H 1.48504 * 109.47017 * 90.00087 * 27 25 23 29 29 H 1.48509 * 109.47182 * 209.99575 * 27 25 23 30 30 H 1.48498 * 109.47437 * 329.99779 * 27 25 23 31 31 C 1.53149 * 109.23788 * 48.81364 * 8 7 5 32 32 C 1.46476 * 127.78047 * 180.33067 * 4 3 2 33 33 H 1.08999 * 109.47435 * 89.99853 * 1 2 3 34 34 H 1.09004 * 109.47052 * 209.99622 * 1 2 3 35 35 H 1.08998 * 109.46982 * 329.99510 * 1 2 3 36 36 H 1.08002 * 126.65874 * 359.95214 * 3 2 1 37 37 H 1.08988 * 109.71655 * 103.76201 * 7 5 4 38 38 H 1.09007 * 109.71279 * 224.36106 * 7 5 4 39 39 H 0.96999 * 119.99933 * 359.97438 * 12 10 8 40 40 H 1.08996 * 110.62520 * 236.97478 * 15 13 12 41 41 H 1.08997 * 110.62407 * 359.97438 * 15 13 12 42 42 H 1.09002 * 110.62516 * 313.33588 * 18 16 15 43 43 H 1.09001 * 110.76570 * 190.37715 * 18 16 15 44 44 H 1.09001 * 110.62447 * 241.50857 * 19 18 16 45 45 H 1.09003 * 110.75988 * 118.55872 * 19 18 16 46 46 H 0.96998 * 120.00236 * 180.02562 * 26 25 23 47 47 H 1.08993 * 109.46514 * 50.51861 * 31 8 7 48 48 H 1.08998 * 109.46166 * 170.50915 * 31 8 7 49 49 H 1.08997 * 109.58429 * 282.61775 * 32 4 3 50 50 H 1.09000 * 109.58227 * 43.03015 * 32 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2989 1.0914 0.0000 4 7 3.5856 0.6415 0.0006 5 6 3.5413 -0.7120 -0.0003 6 7 2.2956 -1.0870 0.0001 7 6 4.7655 -1.5968 -0.0020 8 6 5.9745 -0.7416 -0.4022 9 1 5.9069 -0.4880 -1.4602 10 6 7.2433 -1.5146 -0.1500 11 8 8.0754 -1.0804 0.6180 12 7 7.4534 -2.6885 -0.7781 13 6 8.6865 -3.4402 -0.5326 14 1 8.9855 -3.3547 0.5122 15 6 8.5088 -4.9256 -0.9328 16 6 9.5664 -5.1262 -2.0598 17 1 9.8724 -6.1543 -2.2534 18 6 9.0021 -4.3500 -3.2877 19 6 9.1798 -2.8647 -2.8874 20 6 9.8279 -2.9457 -1.4725 21 1 10.3527 -2.0487 -1.1436 22 7 10.6536 -4.1938 -1.6051 23 6 11.9865 -4.4137 -1.3807 24 1 12.6196 -3.6031 -1.0511 25 6 12.5241 -5.6782 -1.5779 26 7 11.7527 -6.6659 -1.9800 27 14 14.3421 -5.9783 -1.2712 28 1 14.5451 -6.3842 0.1428 29 1 14.8243 -7.0577 -2.1700 30 1 15.1023 -4.7318 -1.5424 31 6 5.9825 0.5427 0.4321 32 6 4.8148 1.4382 0.0075 33 1 -0.3634 0.0000 -1.0276 34 1 -0.3633 -0.8901 0.5138 35 1 -0.3633 0.8899 0.5139 36 1 1.9763 2.1222 -0.0007 37 1 4.9214 -2.0106 0.9941 38 1 4.6331 -2.4063 -0.7200 39 1 6.7877 -3.0359 -1.3922 40 1 8.7207 -5.5792 -0.0867 41 1 7.5030 -5.1029 -1.3136 42 1 7.9481 -4.5836 -3.4383 43 1 9.5766 -4.5770 -4.1857 44 1 8.2139 -2.3617 -2.8396 45 1 9.8435 -2.3533 -3.5847 46 1 12.1283 -7.5495 -2.1175 47 1 5.8790 0.2909 1.4875 48 1 6.9225 1.0718 0.2753 49 1 5.0017 1.8303 -0.9922 50 1 4.7115 2.2632 0.7123 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001095618064.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:54 Heat of formation + Delta-G solvation = 65.124200 kcal Electronic energy + Delta-G solvation = -30698.370121 eV Core-core repulsion = 26727.377479 eV Total energy + Delta-G solvation = -3970.992642 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.59126 -40.23555 -38.70923 -36.46761 -34.12767 -33.49380 -32.31691 -31.77409 -29.55392 -29.17951 -28.96612 -27.85064 -27.07935 -24.51626 -24.17347 -23.16088 -21.36751 -20.82183 -20.21984 -19.51742 -19.34375 -18.58909 -17.32359 -17.13575 -16.74007 -16.17405 -15.45599 -15.44739 -14.91176 -14.58742 -14.48136 -14.34052 -14.03576 -14.00019 -13.82655 -13.60197 -13.17256 -12.74956 -12.58383 -12.41628 -12.27227 -12.04130 -11.93677 -11.77397 -11.59480 -11.44883 -11.39524 -11.07280 -10.93053 -10.92043 -10.85031 -10.24426 -10.12822 -10.11225 -9.88246 -9.72580 -9.68567 -9.41680 -9.26593 -8.95404 -8.55885 -8.40626 -6.93774 -5.74656 -3.12764 1.80209 2.50937 2.68902 2.87092 3.25545 3.38835 3.43986 3.45349 3.94538 4.16537 4.27290 4.31534 4.45176 4.67143 4.78230 4.81853 4.87204 5.00424 5.10342 5.13248 5.17421 5.35924 5.36700 5.42514 5.48898 5.54175 5.57189 5.66472 5.76903 5.77947 5.80926 5.82295 5.94119 6.03675 6.09379 6.10260 6.27312 6.30619 6.51282 6.56963 6.57816 6.64085 6.77808 6.93124 6.93641 6.96614 7.24449 7.50248 7.68673 7.79459 7.91994 8.14911 8.38597 9.08492 9.71160 10.51165 11.34967 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.027184 B = 0.002270 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.779057 B =12331.230408 C =12805.520688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.006 4.006 3 C -0.056 4.056 4 N -0.455 5.455 5 C 0.215 3.785 6 N -0.485 5.485 7 C -0.024 4.024 8 C -0.113 4.113 9 H 0.103 0.897 10 C 0.517 3.483 11 O -0.538 6.538 12 N -0.708 5.708 13 C 0.127 3.873 14 H 0.082 0.918 15 C -0.141 4.141 16 C 0.154 3.846 17 H 0.155 0.845 18 C -0.137 4.137 19 C -0.131 4.131 20 C 0.129 3.871 21 H 0.085 0.915 22 N -0.589 5.589 23 C -0.210 4.210 24 H 0.079 0.921 25 C -0.013 4.013 26 N -0.923 5.923 27 Si 0.917 3.083 28 H -0.289 1.289 29 H -0.291 1.291 30 H -0.282 1.282 31 C -0.115 4.115 32 C 0.103 3.897 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.173 0.827 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.396 0.604 40 H 0.066 0.934 41 H 0.055 0.945 42 H 0.045 0.955 43 H 0.054 0.946 44 H 0.049 0.951 45 H 0.050 0.950 46 H 0.254 0.746 47 H 0.082 0.918 48 H 0.103 0.897 49 H 0.087 0.913 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.410 14.755 1.383 24.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.135 4.135 3 C -0.189 4.189 4 N -0.138 5.138 5 C -0.048 4.048 6 N -0.204 5.204 7 C -0.063 4.063 8 C -0.135 4.135 9 H 0.121 0.879 10 C 0.302 3.698 11 O -0.415 6.415 12 N -0.358 5.358 13 C 0.021 3.979 14 H 0.100 0.900 15 C -0.180 4.180 16 C 0.048 3.952 17 H 0.171 0.829 18 C -0.177 4.177 19 C -0.170 4.170 20 C 0.020 3.980 21 H 0.103 0.897 22 N -0.310 5.310 23 C -0.338 4.338 24 H 0.097 0.903 25 C -0.208 4.208 26 N -0.571 5.571 27 Si 0.748 3.252 28 H -0.216 1.216 29 H -0.217 1.217 30 H -0.208 1.208 31 C -0.153 4.153 32 C -0.019 4.019 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.190 0.810 37 H 0.114 0.886 38 H 0.119 0.881 39 H 0.230 0.770 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.064 0.936 43 H 0.073 0.927 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.065 0.935 47 H 0.101 0.899 48 H 0.121 0.879 49 H 0.105 0.895 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -18.633 14.165 1.948 23.487 hybrid contribution 0.795 0.737 -0.215 1.105 sum -17.837 14.902 1.733 23.308 Atomic orbital electron populations 1.19994 0.87726 1.02489 1.02051 1.20803 0.96469 0.88325 1.07912 1.22288 0.82882 1.00350 1.13377 1.45391 1.06594 1.07451 1.54384 1.23087 0.94649 0.81578 1.05472 1.69955 0.99637 1.30405 1.20419 1.20132 0.86075 0.95488 1.04590 1.21451 0.93506 0.96022 1.02515 0.87901 1.20126 0.87366 0.81648 0.80709 1.90717 1.46296 1.68234 1.36240 1.46272 1.22164 1.21687 1.45690 1.22684 0.83182 0.91630 1.00373 0.89965 1.23283 0.99322 0.93728 1.01708 1.23766 0.84288 0.98634 0.88543 0.82857 1.23058 0.98284 0.95677 1.00670 1.22915 0.98755 0.96951 0.98399 1.23180 0.90404 0.91343 0.93115 0.89729 1.46475 1.04150 1.04043 1.76308 1.19053 0.82146 0.94965 1.37642 0.90327 1.24703 0.98260 0.95612 1.02211 1.69429 1.33654 1.01178 1.52878 0.86027 0.84184 0.77462 0.77561 1.21634 1.21684 1.20777 1.21697 0.98042 0.94601 1.00980 1.22050 0.81960 0.94420 1.03430 0.91568 0.91252 0.91537 0.81003 0.88618 0.88067 0.76965 0.91545 0.92619 0.93628 0.92681 0.93195 0.93140 0.93537 0.89946 0.87895 0.89499 0.88806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.51 10.42 36.00 0.38 -0.13 16 2 C -0.01 -0.07 7.10 -82.72 -0.59 -0.65 16 3 C -0.06 -0.52 11.55 -16.76 -0.19 -0.71 16 4 N -0.46 -4.32 3.14 -113.82 -0.36 -4.67 16 5 C 0.21 2.44 7.65 -155.24 -1.19 1.25 16 6 N -0.48 -6.39 11.24 -6.88 -0.08 -6.47 16 7 C -0.02 -0.23 5.46 -27.51 -0.15 -0.38 16 8 C -0.11 -1.06 2.55 -91.49 -0.23 -1.29 16 9 H 0.10 0.84 8.12 -51.93 -0.42 0.41 16 10 C 0.52 6.82 7.13 -10.98 -0.08 6.74 16 11 O -0.54 -9.25 15.56 5.56 0.09 -9.16 16 12 N -0.71 -9.44 3.54 -51.37 -0.18 -9.62 16 13 C 0.13 2.25 3.08 -65.40 -0.20 2.05 16 14 H 0.08 1.65 7.70 -51.93 -0.40 1.25 16 15 C -0.14 -2.57 6.20 -24.24 -0.15 -2.72 16 16 C 0.15 3.39 4.72 -62.78 -0.30 3.09 16 17 H 0.15 3.88 5.52 -51.93 -0.29 3.60 16 18 C -0.14 -2.57 6.44 -24.24 -0.16 -2.73 16 19 C -0.13 -2.31 6.32 -24.24 -0.15 -2.47 16 20 C 0.13 2.61 5.35 -62.77 -0.34 2.27 16 21 H 0.08 1.79 8.14 -51.92 -0.42 1.36 16 22 N -0.59 -14.38 2.99 -145.76 -0.44 -14.82 16 23 C -0.21 -5.72 10.59 -15.06 -0.16 -5.88 16 24 H 0.08 2.11 7.83 -52.48 -0.41 1.69 16 25 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 26 N -0.92 -25.91 10.47 55.49 0.58 -25.33 16 27 Si 0.92 21.87 29.55 -169.99 -5.02 16.84 16 28 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 29 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 30 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 31 C -0.12 -0.97 4.67 -26.57 -0.12 -1.10 16 32 C 0.10 0.69 6.98 -3.97 -0.03 0.67 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.10 0.96 8.11 -51.94 -0.42 0.54 16 38 H 0.10 0.87 7.94 -51.93 -0.41 0.46 16 39 H 0.40 4.32 7.72 -40.82 -0.32 4.00 16 40 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 41 H 0.06 0.84 7.34 -51.93 -0.38 0.46 16 42 H 0.05 0.72 7.82 -51.93 -0.41 0.31 16 43 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.05 0.74 6.48 -51.93 -0.34 0.40 16 45 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 47 H 0.08 0.79 8.12 -51.93 -0.42 0.36 16 48 H 0.10 0.89 7.79 -51.93 -0.40 0.48 16 49 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 389.64 15.07 5.87 5.87 Total: -1.00 -32.93 389.64 -11.27 -44.20 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -7.98 Total: 5.58 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: -3.75 Total: -2.43 kcal Atomic # 7 Polarization: -60.43 SS G_CDS: -0.47 Total: -60.91 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.09 Total: -9.16 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.93 -11.27 -44.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095618064.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.320 kcal (2) G-P(sol) polarization free energy of solvation -32.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds