Wall clock time and date at job start Wed Apr 1 2020 03:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34848 * 125.96401 * 2 1 4 4 N 1.36312 * 106.69222 * 179.97438 * 3 2 1 5 5 C 1.35426 * 107.39555 * 0.05525 * 4 3 2 6 6 N 1.30089 * 108.62963 * 359.93158 * 5 4 3 7 7 C 1.51047 * 123.98019 * 179.91005 * 5 4 3 8 8 C 1.53400 * 108.21237 * 344.08086 * 7 5 4 9 9 H 1.09007 * 109.50738 * 288.88724 * 8 7 5 10 10 C 1.50700 * 109.50971 * 168.79175 * 8 7 5 11 11 O 1.21275 * 119.99814 * 239.99928 * 10 8 7 12 12 N 1.34780 * 119.99869 * 60.00350 * 10 8 7 13 13 C 1.46497 * 119.99940 * 180.02562 * 12 10 8 14 14 H 1.09002 * 110.56091 * 36.96218 * 13 12 10 15 15 C 1.54854 * 110.62738 * 160.03861 * 13 12 10 16 16 C 1.55842 * 103.44576 * 118.48866 * 15 13 12 17 17 H 1.08999 * 116.12791 * 159.14841 * 16 15 13 18 18 C 1.55844 * 105.06424 * 288.17633 * 16 15 13 19 19 C 1.54854 * 103.44622 * 71.82401 * 18 16 15 20 20 C 1.55837 * 103.44393 * 0.02562 * 19 18 16 21 21 H 1.09011 * 115.55679 * 159.56841 * 20 19 18 22 22 N 1.50235 * 101.05308 * 32.93798 * 20 19 18 23 23 C 1.36937 * 130.83887 * 126.00748 * 22 20 19 24 24 H 1.08005 * 120.00149 * 359.97438 * 23 22 20 25 25 C 1.38810 * 120.00016 * 180.02562 * 23 22 20 26 26 N 1.31613 * 120.00077 * 359.97438 * 25 23 22 27 27 Si 1.86800 * 119.99846 * 180.02562 * 25 23 22 28 28 H 1.48504 * 109.47017 * 90.00087 * 27 25 23 29 29 H 1.48509 * 109.47182 * 209.99575 * 27 25 23 30 30 H 1.48498 * 109.47437 * 329.99779 * 27 25 23 31 31 C 1.53149 * 109.23788 * 48.81364 * 8 7 5 32 32 C 1.46476 * 127.78047 * 180.33067 * 4 3 2 33 33 H 1.08999 * 109.47435 * 89.99853 * 1 2 3 34 34 H 1.09004 * 109.47052 * 209.99622 * 1 2 3 35 35 H 1.08998 * 109.46982 * 329.99510 * 1 2 3 36 36 H 1.08002 * 126.65874 * 359.95214 * 3 2 1 37 37 H 1.08988 * 109.71655 * 103.76201 * 7 5 4 38 38 H 1.09007 * 109.71279 * 224.36106 * 7 5 4 39 39 H 0.96999 * 119.99933 * 359.97438 * 12 10 8 40 40 H 1.08996 * 110.62520 * 236.97478 * 15 13 12 41 41 H 1.08997 * 110.62407 * 359.97438 * 15 13 12 42 42 H 1.09002 * 110.62516 * 313.33588 * 18 16 15 43 43 H 1.09001 * 110.76570 * 190.37715 * 18 16 15 44 44 H 1.09001 * 110.62447 * 241.50857 * 19 18 16 45 45 H 1.09003 * 110.75988 * 118.55872 * 19 18 16 46 46 H 0.96998 * 120.00236 * 180.02562 * 26 25 23 47 47 H 1.08993 * 109.46514 * 50.51861 * 31 8 7 48 48 H 1.08998 * 109.46166 * 170.50915 * 31 8 7 49 49 H 1.08997 * 109.58429 * 282.61775 * 32 4 3 50 50 H 1.09000 * 109.58227 * 43.03015 * 32 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2989 1.0914 0.0000 4 7 3.5856 0.6415 0.0006 5 6 3.5413 -0.7120 -0.0003 6 7 2.2956 -1.0870 0.0001 7 6 4.7655 -1.5968 -0.0020 8 6 5.9745 -0.7416 -0.4022 9 1 5.9069 -0.4880 -1.4602 10 6 7.2433 -1.5146 -0.1500 11 8 8.0754 -1.0804 0.6180 12 7 7.4534 -2.6885 -0.7781 13 6 8.6865 -3.4402 -0.5326 14 1 8.9855 -3.3547 0.5122 15 6 8.5088 -4.9256 -0.9328 16 6 9.5664 -5.1262 -2.0598 17 1 9.8724 -6.1543 -2.2534 18 6 9.0021 -4.3500 -3.2877 19 6 9.1798 -2.8647 -2.8874 20 6 9.8279 -2.9457 -1.4725 21 1 10.3527 -2.0487 -1.1436 22 7 10.6536 -4.1938 -1.6051 23 6 11.9865 -4.4137 -1.3807 24 1 12.6196 -3.6031 -1.0511 25 6 12.5241 -5.6782 -1.5779 26 7 11.7527 -6.6659 -1.9800 27 14 14.3421 -5.9783 -1.2712 28 1 14.5451 -6.3842 0.1428 29 1 14.8243 -7.0577 -2.1700 30 1 15.1023 -4.7318 -1.5424 31 6 5.9825 0.5427 0.4321 32 6 4.8148 1.4382 0.0075 33 1 -0.3634 0.0000 -1.0276 34 1 -0.3633 -0.8901 0.5138 35 1 -0.3633 0.8899 0.5139 36 1 1.9763 2.1222 -0.0007 37 1 4.9214 -2.0106 0.9941 38 1 4.6331 -2.4063 -0.7200 39 1 6.7877 -3.0359 -1.3922 40 1 8.7207 -5.5792 -0.0867 41 1 7.5030 -5.1029 -1.3136 42 1 7.9481 -4.5836 -3.4383 43 1 9.5766 -4.5770 -4.1857 44 1 8.2139 -2.3617 -2.8396 45 1 9.8435 -2.3533 -3.5847 46 1 12.1283 -7.5495 -2.1175 47 1 5.8790 0.2909 1.4875 48 1 6.9225 1.0718 0.2753 49 1 5.0017 1.8303 -0.9922 50 1 4.7115 2.2632 0.7123 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001095618064.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:53 Heat of formation + Delta-G solvation = 46.065104 kcal Electronic energy + Delta-G solvation = -30699.196586 eV Core-core repulsion = 26727.377479 eV Total energy + Delta-G solvation = -3971.819107 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.30152 -41.54192 -40.05369 -37.28469 -35.49955 -34.49117 -33.99008 -32.42727 -31.00347 -30.79127 -30.02281 -29.12301 -27.99797 -26.16729 -25.05556 -24.06572 -22.76136 -21.86098 -21.34856 -20.91447 -20.15187 -20.03905 -18.94934 -18.01565 -17.78474 -17.06449 -16.81401 -16.60131 -16.48991 -15.99859 -15.63883 -15.27370 -15.10637 -14.87022 -14.66791 -14.64281 -14.09224 -13.93786 -13.77498 -13.48381 -13.42857 -13.23227 -13.09698 -12.90226 -12.79749 -12.75571 -12.61229 -12.56334 -12.36134 -12.20306 -12.10039 -11.99986 -11.88008 -11.53656 -11.18273 -11.04215 -10.90286 -10.77659 -10.74678 -10.43863 -9.96566 -9.09954 -8.85250 -7.79492 -5.18601 1.11233 1.45848 1.47052 1.55053 1.62420 1.88421 2.10697 2.15636 2.50175 3.18607 3.33772 3.48300 3.52315 3.58156 3.64277 3.93813 4.02726 4.08019 4.14836 4.16628 4.19733 4.28360 4.38030 4.43013 4.47848 4.51079 4.55138 4.62715 4.68172 4.73683 4.77404 4.82847 4.89860 4.94026 4.99344 5.06290 5.08421 5.11375 5.16914 5.19708 5.25621 5.34640 5.41789 5.47861 5.56099 5.76721 5.90427 5.91629 6.26695 6.28383 6.63648 7.05761 7.18896 7.31575 7.69702 8.55591 9.27277 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.027184 B = 0.002270 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.779057 B =12331.230408 C =12805.520688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C -0.039 4.039 3 C -0.047 4.047 4 N -0.455 5.455 5 C 0.196 3.804 6 N -0.524 5.524 7 C -0.019 4.019 8 C -0.097 4.097 9 H 0.128 0.872 10 C 0.520 3.480 11 O -0.579 6.579 12 N -0.696 5.696 13 C 0.148 3.852 14 H 0.053 0.947 15 C -0.127 4.127 16 C 0.138 3.862 17 H 0.119 0.881 18 C -0.127 4.127 19 C -0.116 4.116 20 C 0.119 3.881 21 H 0.068 0.932 22 N -0.619 5.619 23 C -0.222 4.222 24 H 0.071 0.929 25 C -0.065 4.065 26 N -0.944 5.944 27 Si 0.975 3.025 28 H -0.290 1.290 29 H -0.292 1.292 30 H -0.276 1.276 31 C -0.113 4.113 32 C 0.106 3.894 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.088 0.912 36 H 0.206 0.794 37 H 0.085 0.915 38 H 0.113 0.887 39 H 0.414 0.586 40 H 0.044 0.956 41 H 0.097 0.903 42 H 0.087 0.913 43 H 0.033 0.967 44 H 0.089 0.911 45 H 0.041 0.959 46 H 0.248 0.752 47 H 0.066 0.934 48 H 0.102 0.898 49 H 0.109 0.891 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.677 17.049 0.530 27.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.167 4.167 3 C -0.180 4.180 4 N -0.137 5.137 5 C -0.066 4.066 6 N -0.245 5.245 7 C -0.058 4.058 8 C -0.118 4.118 9 H 0.146 0.854 10 C 0.307 3.693 11 O -0.458 6.458 12 N -0.348 5.348 13 C 0.041 3.959 14 H 0.071 0.929 15 C -0.166 4.166 16 C 0.032 3.968 17 H 0.136 0.864 18 C -0.166 4.166 19 C -0.155 4.155 20 C 0.011 3.989 21 H 0.086 0.914 22 N -0.341 5.341 23 C -0.351 4.351 24 H 0.089 0.911 25 C -0.258 4.258 26 N -0.593 5.593 27 Si 0.804 3.196 28 H -0.217 1.217 29 H -0.218 1.218 30 H -0.201 1.201 31 C -0.152 4.152 32 C -0.014 4.014 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.107 0.893 36 H 0.223 0.777 37 H 0.103 0.897 38 H 0.131 0.869 39 H 0.252 0.748 40 H 0.063 0.937 41 H 0.115 0.885 42 H 0.105 0.895 43 H 0.052 0.948 44 H 0.108 0.892 45 H 0.059 0.941 46 H 0.058 0.942 47 H 0.085 0.915 48 H 0.121 0.879 49 H 0.127 0.873 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -20.948 16.489 1.079 26.681 hybrid contribution 1.467 0.089 0.108 1.473 sum -19.481 16.578 1.187 25.608 Atomic orbital electron populations 1.20039 0.86294 1.03021 1.02574 1.21360 0.97803 0.88530 1.09031 1.22822 0.82407 1.01423 1.11341 1.45585 1.07523 1.07092 1.53545 1.23222 0.94525 0.82624 1.06253 1.69895 1.00831 1.32118 1.21630 1.20096 0.85616 0.95647 1.04418 1.21370 0.90763 0.95595 1.04111 0.85411 1.20778 0.88043 0.81133 0.79378 1.90714 1.48093 1.69138 1.37870 1.46020 1.20962 1.21582 1.46262 1.22066 0.84253 0.91629 0.97998 0.92888 1.23113 1.00286 0.93500 0.99725 1.23677 0.84765 0.97111 0.91273 0.86420 1.22952 1.00119 0.95515 0.98014 1.22815 1.00187 0.96579 0.95906 1.23326 0.90619 0.89526 0.95406 0.91393 1.46741 1.03979 1.06346 1.76992 1.19288 0.83976 0.94910 1.36975 0.91075 1.25416 1.01802 0.95624 1.02973 1.69667 1.34664 1.01049 1.53959 0.85120 0.80215 0.77218 0.77025 1.21698 1.21848 1.20090 1.21661 0.99002 0.94518 0.99975 1.22218 0.79962 0.93951 1.05311 0.91005 0.92397 0.89329 0.77700 0.89668 0.86883 0.74840 0.93664 0.88504 0.89495 0.94821 0.89243 0.94059 0.94184 0.91521 0.87942 0.87289 0.86657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.86 10.42 71.23 0.74 -0.12 16 2 C -0.04 -0.78 7.10 41.40 0.29 -0.48 16 3 C -0.05 -0.71 11.55 83.22 0.96 0.25 16 4 N -0.45 -7.21 3.14 -514.00 -1.61 -8.82 16 5 C 0.20 4.05 7.65 138.23 1.06 5.11 16 6 N -0.52 -13.14 11.24 -175.68 -1.98 -15.12 16 7 C -0.02 -0.32 5.46 30.09 0.16 -0.15 16 8 C -0.10 -1.53 2.55 -11.36 -0.03 -1.55 16 9 H 0.13 1.48 8.12 -2.38 -0.02 1.46 16 10 C 0.52 12.68 7.13 87.66 0.63 13.30 16 11 O -0.58 -19.56 15.56 -3.02 -0.05 -19.60 16 12 N -0.70 -16.78 3.54 -434.81 -1.54 -18.32 16 13 C 0.15 5.13 3.08 46.63 0.14 5.27 16 14 H 0.05 2.17 7.70 -2.39 -0.02 2.16 16 15 C -0.13 -4.51 6.20 32.21 0.20 -4.31 16 16 C 0.14 6.06 4.72 46.22 0.22 6.28 16 17 H 0.12 6.15 5.52 -2.39 -0.01 6.14 16 18 C -0.13 -4.51 6.44 32.21 0.21 -4.31 16 19 C -0.12 -3.85 6.32 32.21 0.20 -3.64 16 20 C 0.12 4.81 5.35 46.25 0.25 5.06 16 21 H 0.07 2.93 8.14 -2.38 -0.02 2.91 16 22 N -0.62 -30.90 2.99 -615.06 -1.84 -32.74 16 23 C -0.22 -12.51 10.59 84.03 0.89 -11.62 16 24 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 25 C -0.07 -3.69 5.50 84.86 0.47 -3.22 16 26 N -0.94 -54.78 10.47 21.65 0.23 -54.55 16 27 Si 0.97 46.16 29.55 68.60 2.03 48.19 16 28 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 29 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 30 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 31 C -0.11 -1.64 4.67 30.70 0.14 -1.49 16 32 C 0.11 1.03 6.98 86.44 0.60 1.63 16 33 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.06 0.92 8.14 -2.38 -0.02 0.90 16 35 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.21 1.52 8.06 -2.91 -0.02 1.50 16 37 H 0.08 1.62 8.11 -2.39 -0.02 1.60 16 38 H 0.11 1.61 7.94 -2.38 -0.02 1.59 16 39 H 0.41 7.23 7.72 -92.71 -0.72 6.51 16 40 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.10 2.61 7.34 -2.39 -0.02 2.60 16 42 H 0.09 2.37 7.82 -2.39 -0.02 2.35 16 43 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.09 2.26 6.48 -2.39 -0.02 2.24 16 45 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 47 H 0.07 1.18 8.12 -2.39 -0.02 1.16 16 48 H 0.10 1.53 7.79 -2.39 -0.02 1.51 16 49 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 50 H 0.12 0.68 8.14 -2.39 -0.02 0.66 16 Total: -1.00 -76.17 389.64 2.62 -73.55 By element: Atomic # 1 Polarization: 21.18 SS G_CDS: 0.23 Total: 21.42 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: 7.14 Total: 6.00 kcal Atomic # 7 Polarization: -122.81 SS G_CDS: -6.74 Total: -129.55 kcal Atomic # 8 Polarization: -19.56 SS G_CDS: -0.05 Total: -19.60 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -76.17 2.62 -73.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001095618064.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.617 kcal (2) G-P(sol) polarization free energy of solvation -76.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds