Wall clock time and date at job start Wed Apr 1 2020 03:01:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.32169 * 120.53506 * 2 1 4 4 C 1.31854 * 120.96119 * 180.26986 * 3 2 1 5 5 C 1.50706 * 118.94433 * 179.72546 * 4 3 2 6 6 C 1.53004 * 109.46728 * 120.02123 * 5 4 3 7 7 C 1.53001 * 109.46935 * 240.01950 * 5 4 3 8 8 N 1.31881 * 122.10126 * 359.74730 * 4 3 2 9 9 C 1.32133 * 120.96501 * 359.97438 * 8 4 3 10 10 C 1.39923 * 120.53604 * 179.74216 * 2 1 3 11 11 C 1.47823 * 120.94332 * 359.97438 * 10 2 1 12 12 O 1.21548 * 120.00093 * 353.75110 * 11 10 2 13 13 N 1.34774 * 120.00103 * 173.74800 * 11 10 2 14 14 C 1.46506 * 120.00138 * 180.28045 * 13 11 10 15 15 H 1.08994 * 110.55583 * 35.95822 * 14 13 11 16 16 C 1.54851 * 110.62660 * 158.86277 * 14 13 11 17 17 C 1.55850 * 103.44385 * 118.49149 * 16 14 13 18 18 H 1.08995 * 115.55848 * 158.81270 * 17 16 14 19 19 C 1.55849 * 105.06000 * 287.41640 * 17 16 14 20 20 C 1.57379 * 102.53892 * 72.38386 * 19 17 16 21 21 C 1.55845 * 110.62424 * 273.06150 * 14 13 11 22 22 H 1.09001 * 115.56091 * 82.69407 * 21 14 13 23 23 N 1.50237 * 101.05208 * 32.93351 * 17 16 14 24 24 C 1.36935 * 130.83566 * 126.05684 * 23 17 16 25 25 H 1.08003 * 120.00065 * 179.97438 * 24 23 17 26 26 C 1.38809 * 120.00146 * 359.97051 * 24 23 17 27 27 N 1.31614 * 120.00148 * 0.02562 * 26 24 23 28 28 Si 1.86804 * 120.00107 * 179.97438 * 26 24 23 29 29 H 1.48499 * 109.46956 * 0.02562 * 28 26 24 30 30 H 1.48501 * 109.46987 * 120.00498 * 28 26 24 31 31 H 1.48499 * 109.47183 * 240.00427 * 28 26 24 32 32 H 1.09000 * 109.46818 * 264.19175 * 1 2 3 33 33 H 1.09000 * 109.47153 * 24.18891 * 1 2 3 34 34 H 1.08992 * 109.46646 * 144.18923 * 1 2 3 35 35 H 1.08993 * 109.47303 * 0.02562 * 5 4 3 36 36 H 1.09002 * 109.47032 * 60.00318 * 6 5 4 37 37 H 1.09000 * 109.47199 * 179.97438 * 6 5 4 38 38 H 1.08996 * 109.47536 * 299.99982 * 6 5 4 39 39 H 1.08999 * 109.46770 * 300.00184 * 7 5 4 40 40 H 1.08991 * 109.46812 * 60.00341 * 7 5 4 41 41 H 1.08999 * 109.46883 * 180.02562 * 7 5 4 42 42 H 1.07996 * 120.53921 * 180.02562 * 9 8 4 43 43 H 0.97001 * 120.00337 * 0.02562 * 13 11 10 44 44 H 1.09000 * 110.62461 * 236.97430 * 16 14 13 45 45 H 1.08996 * 110.63059 * 359.83935 * 16 14 13 46 46 H 1.08999 * 110.62425 * 190.31286 * 19 17 16 47 47 H 1.08992 * 110.62841 * 313.33877 * 19 17 16 48 48 H 1.08998 * 110.22532 * 241.19405 * 20 19 17 49 49 H 1.08999 * 110.94173 * 118.23098 * 20 19 17 50 50 H 0.97005 * 120.00352 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1786 1.1384 0.0000 4 6 3.4971 1.1482 -0.0053 5 6 4.2166 2.4724 -0.0114 6 6 5.0992 2.5789 1.2338 7 6 5.0884 2.5733 -1.2647 8 7 4.2062 0.0363 -0.0059 9 6 3.6165 -1.1461 -0.0007 10 6 2.2180 -1.2052 0.0054 11 6 1.5122 -2.5040 0.0118 12 8 0.3027 -2.5378 0.1270 13 7 2.2098 -3.6507 -0.1101 14 6 1.5097 -4.9376 -0.1099 15 1 0.5501 -4.8513 -0.6195 16 6 2.3819 -6.0332 -0.7709 17 6 2.5973 -7.0659 0.3762 18 1 2.8694 -8.0723 0.0580 19 6 3.5938 -6.3787 1.3579 20 6 2.7007 -5.2723 2.0324 21 6 1.3132 -5.4554 1.3468 22 1 0.4561 -5.0445 1.8804 23 7 1.2990 -6.9429 1.1221 24 6 0.3819 -7.8925 1.4858 25 1 -0.5065 -7.6052 2.0286 26 6 0.5939 -9.2242 1.1567 27 7 1.6767 -9.5744 0.4956 28 14 -0.6569 -10.5197 1.6535 29 1 -1.7769 -9.8724 2.3828 30 1 -1.1815 -11.1929 0.4383 31 1 -0.0069 -11.5235 2.5338 32 1 -0.3633 -0.1040 1.0224 33 1 -0.3633 0.9374 -0.4211 34 1 -0.3632 -0.8333 -0.6013 35 1 3.4871 3.2823 -0.0099 36 1 5.8287 1.7690 1.2324 37 1 5.6200 3.5364 1.2293 38 1 4.4782 2.5069 2.1267 39 1 5.8178 1.7634 -1.2660 40 1 4.4596 2.4975 -2.1517 41 1 5.6091 3.5309 -1.2688 42 1 4.2040 -2.0523 -0.0008 43 1 3.1751 -3.6238 -0.2017 44 1 1.8536 -6.4922 -1.6066 45 1 3.3341 -5.6185 -1.1015 46 1 3.9507 -7.0898 2.1029 47 1 4.4296 -5.9406 0.8124 48 1 3.1049 -4.2820 1.8224 49 1 2.6226 -5.4364 3.1071 50 1 1.8248 -10.5050 0.2653 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096111906.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:01:59 Heat of formation + Delta-G solvation = 36.520803 kcal Electronic energy + Delta-G solvation = -30686.894337 eV Core-core repulsion = 26714.661358 eV Total energy + Delta-G solvation = -3972.232979 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.54971 -41.29124 -39.72460 -36.71725 -35.91559 -35.10058 -34.19110 -32.89973 -30.93030 -30.78397 -29.94259 -28.80669 -28.03788 -26.46571 -25.87595 -24.44079 -23.10442 -22.43039 -21.41660 -21.17207 -20.23209 -19.20799 -19.01551 -18.43177 -17.18133 -16.98582 -16.79774 -16.63269 -16.22171 -15.80723 -15.50915 -15.26120 -15.20258 -15.00751 -14.29002 -14.24564 -14.10257 -13.93898 -13.65552 -13.51974 -13.35764 -13.19944 -12.94921 -12.93097 -12.87940 -12.80023 -12.58666 -12.36642 -12.21352 -12.15020 -11.99109 -11.89670 -11.86624 -11.66920 -11.52141 -11.17641 -11.05454 -10.80272 -10.75289 -10.59640 -10.40550 -9.98752 -8.85155 -7.79280 -5.18236 -0.67624 -0.09122 1.46194 1.47091 1.56368 1.74046 1.99418 2.49638 2.62676 2.69154 2.91317 3.27669 3.34349 3.47990 3.61919 3.78512 3.87418 3.97306 4.05888 4.11618 4.17974 4.18035 4.35721 4.43158 4.48413 4.52065 4.61597 4.64836 4.70822 4.74916 4.79994 4.84064 4.88111 4.96283 4.97752 5.01323 5.06352 5.11392 5.15964 5.19874 5.31386 5.33902 5.34440 5.43810 5.46591 5.54326 5.74050 5.80833 5.88947 6.28509 6.49380 6.91514 7.06128 7.15960 7.69801 8.55183 9.27438 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.023859 B = 0.002435 C = 0.002316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.283353 B =11494.767973 C =12088.941962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.225 3.775 3 N -0.537 5.537 4 C 0.338 3.662 5 C -0.031 4.031 6 C -0.136 4.136 7 C -0.135 4.135 8 N -0.524 5.524 9 C 0.196 3.804 10 C -0.257 4.257 11 C 0.568 3.432 12 O -0.559 6.559 13 N -0.690 5.690 14 C 0.149 3.851 15 H 0.060 0.940 16 C -0.127 4.127 17 C 0.137 3.863 18 H 0.119 0.881 19 C -0.126 4.126 20 C -0.117 4.117 21 C 0.118 3.882 22 H 0.069 0.931 23 N -0.617 5.617 24 C -0.221 4.221 25 H 0.071 0.929 26 C -0.063 4.063 27 N -0.943 5.943 28 Si 0.973 3.027 29 H -0.274 1.274 30 H -0.293 1.293 31 H -0.292 1.292 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.062 0.938 37 H 0.089 0.911 38 H 0.045 0.955 39 H 0.063 0.937 40 H 0.046 0.954 41 H 0.089 0.911 42 H 0.203 0.797 43 H 0.411 0.589 44 H 0.048 0.952 45 H 0.098 0.902 46 H 0.034 0.966 47 H 0.092 0.908 48 H 0.085 0.915 49 H 0.041 0.959 50 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.938 23.957 -3.070 26.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.079 3.921 3 N -0.252 5.252 4 C 0.072 3.928 5 C -0.051 4.051 6 C -0.194 4.194 7 C -0.193 4.193 8 N -0.237 5.237 9 C 0.029 3.971 10 C -0.265 4.265 11 C 0.354 3.646 12 O -0.439 6.439 13 N -0.342 5.342 14 C 0.043 3.957 15 H 0.078 0.922 16 C -0.166 4.166 17 C 0.031 3.969 18 H 0.136 0.864 19 C -0.166 4.166 20 C -0.156 4.156 21 C 0.011 3.989 22 H 0.087 0.913 23 N -0.339 5.339 24 C -0.350 4.350 25 H 0.089 0.911 26 C -0.256 4.256 27 N -0.593 5.593 28 Si 0.803 3.197 29 H -0.199 1.199 30 H -0.220 1.220 31 H -0.220 1.220 32 H 0.107 0.893 33 H 0.105 0.895 34 H 0.112 0.888 35 H 0.119 0.881 36 H 0.082 0.918 37 H 0.108 0.892 38 H 0.064 0.936 39 H 0.082 0.918 40 H 0.065 0.935 41 H 0.107 0.893 42 H 0.220 0.780 43 H 0.250 0.750 44 H 0.066 0.934 45 H 0.116 0.884 46 H 0.053 0.947 47 H 0.110 0.890 48 H 0.103 0.897 49 H 0.059 0.941 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 9.415 24.493 -2.967 26.408 hybrid contribution -1.155 -2.093 0.348 2.416 sum 8.260 22.400 -2.619 24.018 Atomic orbital electron populations 1.21013 0.86336 1.04435 1.04502 1.22189 0.98574 0.86812 0.84517 1.68331 1.10117 1.29636 1.17096 1.24047 0.86416 0.95984 0.86311 1.20211 0.97348 0.88910 0.98679 1.21774 0.99063 1.03847 0.94705 1.21768 0.99126 1.03854 0.94571 1.68303 1.40958 0.98453 1.16033 1.23965 0.90305 0.97449 0.85388 1.21504 0.96964 0.95184 1.12862 1.17934 0.86643 0.83615 0.76380 1.90746 1.14948 1.87354 1.50810 1.45847 1.11038 1.04565 1.72732 1.22142 0.95148 0.81293 0.97153 0.92187 1.23140 0.99393 0.95893 0.98198 1.23644 0.84670 0.98536 0.90003 0.86376 1.23395 0.97463 0.96990 0.98708 1.23222 0.95457 0.98638 0.98267 1.23367 0.96323 0.84514 0.94735 0.91256 1.46766 1.21626 1.01160 1.64353 1.19323 0.99628 0.87466 1.28621 0.91087 1.25381 0.99915 0.98462 1.01865 1.69669 1.27814 1.16046 1.45757 0.85072 0.78444 0.79165 0.77030 1.19914 1.21970 1.21955 0.89276 0.89457 0.88825 0.88052 0.91844 0.89239 0.93614 0.91822 0.93484 0.89262 0.78003 0.75008 0.93355 0.88369 0.94727 0.88973 0.89692 0.94054 0.94185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.43 9.00 71.24 0.64 -1.79 16 2 C 0.23 5.49 6.87 42.92 0.29 5.78 16 3 N -0.54 -12.59 10.22 -175.02 -1.79 -14.38 16 4 C 0.34 6.93 6.34 138.71 0.88 7.81 16 5 C -0.03 -0.45 3.25 -11.54 -0.04 -0.49 16 6 C -0.14 -1.62 9.09 71.98 0.65 -0.97 16 7 C -0.14 -1.56 9.09 71.98 0.65 -0.91 16 8 N -0.52 -10.35 9.77 -186.78 -1.82 -12.18 16 9 C 0.20 3.61 10.80 85.07 0.92 4.52 16 10 C -0.26 -5.94 5.91 -19.91 -0.12 -6.06 16 11 C 0.57 15.53 7.72 86.78 0.67 16.20 16 12 O -0.56 -19.24 13.25 -3.87 -0.05 -19.29 16 13 N -0.69 -17.12 3.60 -437.80 -1.58 -18.70 16 14 C 0.15 5.09 3.08 46.61 0.14 5.24 16 15 H 0.06 2.39 7.67 -2.39 -0.02 2.37 16 16 C -0.13 -4.35 6.20 32.21 0.20 -4.15 16 17 C 0.14 5.91 4.67 46.23 0.22 6.12 16 18 H 0.12 6.04 5.52 -2.39 -0.01 6.02 16 19 C -0.13 -4.38 6.61 33.12 0.22 -4.16 16 20 C -0.12 -3.88 6.40 33.12 0.21 -3.67 16 21 C 0.12 4.74 5.36 46.19 0.25 4.99 16 22 H 0.07 2.98 8.14 -2.39 -0.02 2.96 16 23 N -0.62 -30.36 2.99 -614.73 -1.84 -32.20 16 24 C -0.22 -12.32 10.58 84.03 0.89 -11.43 16 25 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 26 C -0.06 -3.54 5.50 84.86 0.47 -3.07 16 27 N -0.94 -54.05 10.46 21.65 0.23 -53.82 16 28 Si 0.97 45.83 29.55 68.60 2.03 47.85 16 29 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 30 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 31 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 32 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 34 H 0.09 2.46 5.95 -2.39 -0.01 2.44 16 35 H 0.10 1.36 8.09 -2.39 -0.02 1.35 16 36 H 0.06 0.84 8.01 -2.39 -0.02 0.82 16 37 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.04 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.06 0.82 8.01 -2.39 -0.02 0.80 16 40 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 41 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.20 2.22 6.58 -2.91 -0.02 2.20 16 43 H 0.41 7.19 6.18 -92.71 -0.57 6.62 16 44 H 0.05 1.84 8.14 -2.39 -0.02 1.83 16 45 H 0.10 2.49 7.34 -2.39 -0.02 2.48 16 46 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 47 H 0.09 2.38 7.81 -2.39 -0.02 2.36 16 48 H 0.08 2.19 6.46 -2.39 -0.02 2.17 16 49 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 50 H 0.25 13.86 8.31 -92.70 -0.77 13.09 16 Total: -1.00 -68.92 392.79 2.71 -66.21 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: 0.39 Total: 22.53 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: 7.15 Total: 13.97 kcal Atomic # 7 Polarization: -124.47 SS G_CDS: -6.80 Total: -131.27 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.05 Total: -19.29 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.85 kcal Total: -68.92 2.71 -66.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096111906.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.734 kcal (2) G-P(sol) polarization free energy of solvation -68.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds