Wall clock time and date at job start Wed Apr 1 2020 03:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32160 * 120.53982 * 2 1 4 4 C 1.31848 * 120.96704 * 180.25293 * 3 2 1 5 5 C 1.50704 * 118.95213 * 179.72034 * 4 3 2 6 6 C 1.53001 * 109.46786 * 239.73362 * 5 4 3 7 7 C 1.52996 * 109.47545 * 119.73288 * 5 4 3 8 8 N 1.31886 * 122.09761 * 359.44412 * 4 3 2 9 9 C 1.32131 * 120.96469 * 0.27407 * 8 4 3 10 10 C 1.39934 * 120.53491 * 179.70975 * 2 1 3 11 11 C 1.47829 * 120.94013 * 0.04113 * 10 2 1 12 12 O 1.21556 * 119.99963 * 353.90130 * 11 10 2 13 13 N 1.34775 * 119.99860 * 173.90188 * 11 10 2 14 14 C 1.46507 * 119.99984 * 180.02562 * 13 11 10 15 15 H 1.09005 * 110.55757 * 34.29737 * 14 13 11 16 16 C 1.54852 * 110.62544 * 271.40266 * 14 13 11 17 17 C 1.56228 * 103.26743 * 241.54573 * 16 14 13 18 18 H 1.08997 * 116.12281 * 159.09130 * 17 16 14 19 19 C 1.55849 * 104.99950 * 288.06219 * 17 16 14 20 20 C 1.54850 * 103.44379 * 71.87860 * 19 17 16 21 21 C 1.55840 * 103.44768 * 0.02562 * 20 19 17 22 22 H 1.09006 * 115.56451 * 159.56799 * 21 20 19 23 23 N 1.50236 * 101.05529 * 32.93333 * 21 20 19 24 24 C 1.36939 * 130.84206 * 125.99542 * 23 21 20 25 25 H 1.08003 * 119.99531 * 0.02562 * 24 23 21 26 26 C 1.38807 * 120.00141 * 180.02562 * 24 23 21 27 27 N 1.31618 * 119.99933 * 0.02562 * 26 24 23 28 28 Si 1.86800 * 119.99879 * 179.97438 * 26 24 23 29 29 H 1.48509 * 109.46689 * 90.00553 * 28 26 24 30 30 H 1.48494 * 109.47109 * 210.00035 * 28 26 24 31 31 H 1.48500 * 109.47344 * 330.00462 * 28 26 24 32 32 H 1.09003 * 109.47222 * 263.96595 * 1 2 3 33 33 H 1.08997 * 109.47182 * 23.95945 * 1 2 3 34 34 H 1.08997 * 109.47554 * 143.96248 * 1 2 3 35 35 H 1.09001 * 109.46754 * 359.72934 * 5 4 3 36 36 H 1.09000 * 109.47604 * 299.99557 * 6 5 4 37 37 H 1.09006 * 109.47495 * 59.99709 * 6 5 4 38 38 H 1.09007 * 109.47229 * 179.97438 * 6 5 4 39 39 H 1.09002 * 109.47061 * 59.99593 * 7 5 4 40 40 H 1.08996 * 109.47350 * 180.02562 * 7 5 4 41 41 H 1.08997 * 109.47205 * 300.00266 * 7 5 4 42 42 H 1.08001 * 120.53704 * 179.97438 * 9 8 4 43 43 H 0.96998 * 120.00176 * 0.02562 * 13 11 10 44 44 H 1.08997 * 110.62933 * 359.97438 * 16 14 13 45 45 H 1.08994 * 110.63116 * 123.02275 * 16 14 13 46 46 H 1.09001 * 110.62250 * 313.39216 * 19 17 16 47 47 H 1.08993 * 110.76137 * 190.43606 * 19 17 16 48 48 H 1.08992 * 110.63187 * 241.50851 * 20 19 17 49 49 H 1.09011 * 110.62310 * 118.49090 * 20 19 17 50 50 H 0.97001 * 119.99841 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1383 0.0000 4 6 3.4970 1.1481 -0.0050 5 6 4.2166 2.4722 -0.0112 6 6 5.0942 2.5697 -1.2607 7 6 5.0935 2.5820 1.2377 8 7 4.2061 0.0361 0.0007 9 6 3.6164 -1.1463 0.0063 10 6 2.2179 -1.2053 0.0061 11 6 1.5120 -2.5041 0.0118 12 8 0.3020 -2.5377 0.1230 13 7 2.2100 -3.6509 -0.1064 14 6 1.5103 -4.9381 -0.1013 15 1 0.5377 -4.8470 -0.5850 16 6 1.3526 -5.4676 1.3453 17 6 2.1450 -6.8139 1.3227 18 1 2.4740 -7.1933 2.2901 19 6 1.2632 -7.7868 0.4833 20 6 1.4169 -7.2552 -0.9629 21 6 2.3712 -6.0338 -0.8005 22 1 2.8894 -5.7180 -1.7060 23 7 3.2352 -6.4929 0.3396 24 6 4.5968 -6.5896 0.4489 25 1 5.2266 -6.3067 -0.3816 26 6 5.1674 -7.0513 1.6270 27 7 4.3998 -7.3966 2.6389 28 14 7.0248 -7.1839 1.7758 29 1 7.5715 -5.9076 2.3028 30 1 7.3692 -8.2907 2.7040 31 1 7.6101 -7.4587 0.4389 32 1 -0.3634 -0.1080 1.0220 33 1 -0.3633 0.9391 -0.4173 34 1 -0.3634 -0.8310 -0.6046 35 1 3.4871 3.2821 -0.0154 36 1 5.8237 1.7598 -1.2565 37 1 4.4696 2.4915 -2.1506 38 1 5.6145 3.5276 -1.2655 39 1 5.8229 1.7721 1.2420 40 1 5.6136 3.5399 1.2335 41 1 4.4683 2.5125 2.1279 42 1 4.2038 -2.0525 0.0104 43 1 3.1756 -3.6241 -0.1948 44 1 1.7953 -4.7728 2.0589 45 1 0.3022 -5.6418 1.5781 46 1 0.2224 -7.7344 0.8030 47 1 1.6358 -8.8083 0.5586 48 1 0.4526 -6.9392 -1.3605 49 1 1.8685 -8.0122 -1.6043 50 1 4.7986 -7.7195 3.4620 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097984477.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:04 Heat of formation + Delta-G solvation = 46.995205 kcal Electronic energy + Delta-G solvation = -30851.642890 eV Core-core repulsion = 26879.864116 eV Total energy + Delta-G solvation = -3971.778774 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.47752 -39.75363 -38.41828 -35.87470 -34.70158 -33.69239 -32.61344 -31.89189 -29.27227 -29.15574 -28.58158 -27.48257 -27.39047 -25.26263 -24.25358 -23.44463 -21.96604 -20.64098 -20.13149 -19.85325 -18.79135 -18.03102 -17.43745 -17.05031 -16.27192 -15.77420 -15.48913 -14.89918 -14.52860 -14.51887 -14.35243 -14.22950 -13.93256 -13.59571 -13.33007 -13.25106 -13.00080 -12.81047 -12.46736 -12.31591 -12.13636 -11.95734 -11.89842 -11.45168 -11.35077 -11.31843 -11.17802 -11.16362 -10.99232 -10.94374 -10.63534 -10.57427 -10.41130 -10.14799 -9.97975 -9.69583 -9.52841 -9.37450 -9.31040 -9.20894 -9.02234 -8.55943 -7.01662 -5.80538 -3.20154 0.38095 0.93728 2.93481 3.32614 3.34409 3.38139 3.40211 3.61359 3.69194 3.90121 4.29806 4.35392 4.69947 4.72855 4.80572 4.88114 4.94730 5.05669 5.28754 5.30303 5.42249 5.42849 5.55243 5.57398 5.61800 5.62690 5.64704 5.69016 5.76678 5.81718 5.96850 5.99006 5.99835 6.02568 6.08385 6.14569 6.23254 6.30804 6.35993 6.42655 6.54069 6.67732 6.76844 6.83205 6.89080 7.01730 7.25636 7.41061 7.73036 7.79772 7.93474 8.11006 8.40368 9.00967 9.64533 10.44856 11.28316 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010678 B = 0.003434 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.596056 B = 8151.930335 C =10103.848690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.233 3.767 3 N -0.526 5.526 4 C 0.341 3.659 5 C -0.028 4.028 6 C -0.141 4.141 7 C -0.142 4.142 8 N -0.519 5.519 9 C 0.190 3.810 10 C -0.247 4.247 11 C 0.564 3.436 12 O -0.538 6.538 13 N -0.697 5.697 14 C 0.129 3.871 15 H 0.082 0.918 16 C -0.142 4.142 17 C 0.154 3.846 18 H 0.153 0.847 19 C -0.139 4.139 20 C -0.128 4.128 21 C 0.125 3.875 22 H 0.088 0.912 23 N -0.590 5.590 24 C -0.218 4.218 25 H 0.079 0.921 26 C -0.008 4.008 27 N -0.918 5.918 28 Si 0.914 3.086 29 H -0.289 1.289 30 H -0.290 1.290 31 H -0.282 1.282 32 H 0.089 0.911 33 H 0.072 0.928 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.053 0.947 42 H 0.175 0.825 43 H 0.401 0.599 44 H 0.059 0.941 45 H 0.055 0.945 46 H 0.048 0.952 47 H 0.055 0.945 48 H 0.052 0.948 49 H 0.057 0.943 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.705 14.872 -6.083 16.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.087 3.913 3 N -0.241 5.241 4 C 0.075 3.925 5 C -0.048 4.048 6 C -0.199 4.199 7 C -0.200 4.200 8 N -0.233 5.233 9 C 0.023 3.977 10 C -0.254 4.254 11 C 0.349 3.651 12 O -0.417 6.417 13 N -0.345 5.345 14 C 0.023 3.977 15 H 0.100 0.900 16 C -0.183 4.183 17 C 0.048 3.952 18 H 0.170 0.830 19 C -0.179 4.179 20 C -0.168 4.168 21 C 0.016 3.984 22 H 0.106 0.894 23 N -0.311 5.311 24 C -0.346 4.346 25 H 0.096 0.904 26 C -0.204 4.204 27 N -0.566 5.566 28 Si 0.744 3.256 29 H -0.216 1.216 30 H -0.217 1.217 31 H -0.207 1.207 32 H 0.108 0.892 33 H 0.091 0.909 34 H 0.126 0.874 35 H 0.114 0.886 36 H 0.088 0.912 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.192 0.808 43 H 0.236 0.764 44 H 0.078 0.922 45 H 0.074 0.926 46 H 0.067 0.933 47 H 0.074 0.926 48 H 0.070 0.930 49 H 0.076 0.924 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.792 15.595 -5.842 17.080 hybrid contribution 1.034 -1.000 0.110 1.443 sum -2.757 14.595 -5.732 15.921 Atomic orbital electron populations 1.21065 0.86595 1.04199 1.04730 1.21975 0.98044 0.86384 0.84901 1.68232 1.09482 1.29859 1.16496 1.23387 0.86539 0.94768 0.87818 1.20017 0.96995 0.90278 0.97533 1.21800 0.99593 1.02807 0.95699 1.21804 0.99635 1.02795 0.95750 1.68201 1.41186 0.98317 1.15587 1.23593 0.91069 0.96509 0.86551 1.21713 0.96238 0.96565 1.10911 1.17704 0.86944 0.83134 0.77274 1.90698 1.13344 1.87069 1.50625 1.45948 1.11022 1.05617 1.71956 1.22728 0.95351 0.81393 0.98228 0.90027 1.23512 0.99190 1.00609 0.94968 1.23836 0.84522 0.89946 0.96930 0.82990 1.23070 0.98620 1.00459 0.95714 1.22881 0.97964 0.98240 0.97682 1.23165 0.90993 0.92213 0.92018 0.89383 1.46533 1.00926 1.73969 1.09646 1.18993 0.79639 1.37285 0.98638 0.90367 1.24697 0.97895 1.01665 0.96116 1.69457 1.32866 1.49812 1.04416 0.86087 0.84666 0.77387 0.77421 1.21630 1.21663 1.20746 0.89237 0.90919 0.87422 0.88571 0.91210 0.92788 0.91525 0.91184 0.91513 0.92739 0.80816 0.76368 0.92230 0.92624 0.93302 0.92610 0.92958 0.92395 0.93483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 8.99 36.00 0.32 -1.03 16 2 C 0.23 3.31 6.87 -81.82 -0.56 2.75 16 3 N -0.53 -7.34 10.22 -6.67 -0.07 -7.41 16 4 C 0.34 4.48 6.34 -157.07 -1.00 3.49 16 5 C -0.03 -0.28 3.25 -91.77 -0.30 -0.58 16 6 C -0.14 -1.21 9.09 37.16 0.34 -0.88 16 7 C -0.14 -1.28 9.09 37.16 0.34 -0.94 16 8 N -0.52 -7.16 9.77 -10.39 -0.10 -7.26 16 9 C 0.19 2.61 10.80 -16.78 -0.18 2.43 16 10 C -0.25 -3.60 5.91 -104.69 -0.62 -4.22 16 11 C 0.56 9.09 7.73 -12.34 -0.10 9.00 16 12 O -0.54 -9.59 13.22 5.32 0.07 -9.52 16 13 N -0.70 -11.30 5.04 -52.31 -0.26 -11.56 16 14 C 0.13 2.26 2.76 -65.40 -0.18 2.08 16 15 H 0.08 1.42 7.29 -51.93 -0.38 1.04 16 16 C -0.14 -2.78 6.26 -24.02 -0.15 -2.93 16 17 C 0.15 3.37 4.73 -62.57 -0.30 3.08 16 18 H 0.15 3.86 5.52 -51.93 -0.29 3.58 16 19 C -0.14 -2.65 6.44 -24.23 -0.16 -2.80 16 20 C -0.13 -2.21 6.44 -24.24 -0.16 -2.36 16 21 C 0.12 2.30 5.05 -62.78 -0.32 1.98 16 22 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 23 N -0.59 -13.34 2.99 -145.53 -0.44 -13.78 16 24 C -0.22 -5.47 10.59 -15.06 -0.16 -5.63 16 25 H 0.08 1.89 7.83 -52.48 -0.41 1.48 16 26 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 27 N -0.92 -25.08 10.47 55.49 0.58 -24.50 16 28 Si 0.91 20.92 29.55 -169.99 -5.02 15.90 16 29 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 30 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 31 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 32 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.11 1.44 5.96 -51.93 -0.31 1.13 16 35 H 0.10 0.88 8.09 -51.93 -0.42 0.46 16 36 H 0.07 0.66 8.01 -51.93 -0.42 0.25 16 37 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.70 8.01 -51.93 -0.42 0.29 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.17 2.13 6.58 -52.49 -0.35 1.78 16 43 H 0.40 6.24 6.81 -40.82 -0.28 5.97 16 44 H 0.06 1.27 7.98 -51.93 -0.41 0.86 16 45 H 0.06 1.01 7.82 -51.93 -0.41 0.61 16 46 H 0.05 0.83 7.82 -51.93 -0.41 0.42 16 47 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.05 0.79 7.82 -51.93 -0.41 0.38 16 49 H 0.06 1.00 8.14 -51.92 -0.42 0.58 16 50 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 395.50 15.07 5.96 5.96 Total: -1.00 -28.88 395.50 -10.38 -39.26 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -7.83 Total: 9.76 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: -3.26 Total: 3.14 kcal Atomic # 7 Polarization: -64.21 SS G_CDS: -0.29 Total: -64.50 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.07 Total: -9.52 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -28.88 -10.38 -39.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097984477.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.257 kcal (2) G-P(sol) polarization free energy of solvation -28.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds