Wall clock time and date at job start Wed Apr 1 2020 03:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.32160 * 120.53982 * 2 1 4 4 C 1.31848 * 120.96704 * 180.25293 * 3 2 1 5 5 C 1.50704 * 118.95213 * 179.72034 * 4 3 2 6 6 C 1.53001 * 109.46786 * 239.73362 * 5 4 3 7 7 C 1.52996 * 109.47545 * 119.73288 * 5 4 3 8 8 N 1.31886 * 122.09761 * 359.44412 * 4 3 2 9 9 C 1.32131 * 120.96469 * 0.27407 * 8 4 3 10 10 C 1.39934 * 120.53491 * 179.70975 * 2 1 3 11 11 C 1.47829 * 120.94013 * 0.04113 * 10 2 1 12 12 O 1.21556 * 119.99963 * 353.90130 * 11 10 2 13 13 N 1.34775 * 119.99860 * 173.90188 * 11 10 2 14 14 C 1.46507 * 119.99984 * 180.02562 * 13 11 10 15 15 H 1.09005 * 110.55757 * 34.29737 * 14 13 11 16 16 C 1.54852 * 110.62544 * 271.40266 * 14 13 11 17 17 C 1.56228 * 103.26743 * 241.54573 * 16 14 13 18 18 H 1.08997 * 116.12281 * 159.09130 * 17 16 14 19 19 C 1.55849 * 104.99950 * 288.06219 * 17 16 14 20 20 C 1.54850 * 103.44379 * 71.87860 * 19 17 16 21 21 C 1.55840 * 103.44768 * 0.02562 * 20 19 17 22 22 H 1.09006 * 115.56451 * 159.56799 * 21 20 19 23 23 N 1.50236 * 101.05529 * 32.93333 * 21 20 19 24 24 C 1.36939 * 130.84206 * 125.99542 * 23 21 20 25 25 H 1.08003 * 119.99531 * 0.02562 * 24 23 21 26 26 C 1.38807 * 120.00141 * 180.02562 * 24 23 21 27 27 N 1.31618 * 119.99933 * 0.02562 * 26 24 23 28 28 Si 1.86800 * 119.99879 * 179.97438 * 26 24 23 29 29 H 1.48509 * 109.46689 * 90.00553 * 28 26 24 30 30 H 1.48494 * 109.47109 * 210.00035 * 28 26 24 31 31 H 1.48500 * 109.47344 * 330.00462 * 28 26 24 32 32 H 1.09003 * 109.47222 * 263.96595 * 1 2 3 33 33 H 1.08997 * 109.47182 * 23.95945 * 1 2 3 34 34 H 1.08997 * 109.47554 * 143.96248 * 1 2 3 35 35 H 1.09001 * 109.46754 * 359.72934 * 5 4 3 36 36 H 1.09000 * 109.47604 * 299.99557 * 6 5 4 37 37 H 1.09006 * 109.47495 * 59.99709 * 6 5 4 38 38 H 1.09007 * 109.47229 * 179.97438 * 6 5 4 39 39 H 1.09002 * 109.47061 * 59.99593 * 7 5 4 40 40 H 1.08996 * 109.47350 * 180.02562 * 7 5 4 41 41 H 1.08997 * 109.47205 * 300.00266 * 7 5 4 42 42 H 1.08001 * 120.53704 * 179.97438 * 9 8 4 43 43 H 0.96998 * 120.00176 * 0.02562 * 13 11 10 44 44 H 1.08997 * 110.62933 * 359.97438 * 16 14 13 45 45 H 1.08994 * 110.63116 * 123.02275 * 16 14 13 46 46 H 1.09001 * 110.62250 * 313.39216 * 19 17 16 47 47 H 1.08993 * 110.76137 * 190.43606 * 19 17 16 48 48 H 1.08992 * 110.63187 * 241.50851 * 20 19 17 49 49 H 1.09011 * 110.62310 * 118.49090 * 20 19 17 50 50 H 0.97001 * 119.99841 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1785 1.1383 0.0000 4 6 3.4970 1.1481 -0.0050 5 6 4.2166 2.4722 -0.0112 6 6 5.0942 2.5697 -1.2607 7 6 5.0935 2.5820 1.2377 8 7 4.2061 0.0361 0.0007 9 6 3.6164 -1.1463 0.0063 10 6 2.2179 -1.2053 0.0061 11 6 1.5120 -2.5041 0.0118 12 8 0.3020 -2.5377 0.1230 13 7 2.2100 -3.6509 -0.1064 14 6 1.5103 -4.9381 -0.1013 15 1 0.5377 -4.8470 -0.5850 16 6 1.3526 -5.4676 1.3453 17 6 2.1450 -6.8139 1.3227 18 1 2.4740 -7.1933 2.2901 19 6 1.2632 -7.7868 0.4833 20 6 1.4169 -7.2552 -0.9629 21 6 2.3712 -6.0338 -0.8005 22 1 2.8894 -5.7180 -1.7060 23 7 3.2352 -6.4929 0.3396 24 6 4.5968 -6.5896 0.4489 25 1 5.2266 -6.3067 -0.3816 26 6 5.1674 -7.0513 1.6270 27 7 4.3998 -7.3966 2.6389 28 14 7.0248 -7.1839 1.7758 29 1 7.5715 -5.9076 2.3028 30 1 7.3692 -8.2907 2.7040 31 1 7.6101 -7.4587 0.4389 32 1 -0.3634 -0.1080 1.0220 33 1 -0.3633 0.9391 -0.4173 34 1 -0.3634 -0.8310 -0.6046 35 1 3.4871 3.2821 -0.0154 36 1 5.8237 1.7598 -1.2565 37 1 4.4696 2.4915 -2.1506 38 1 5.6145 3.5276 -1.2655 39 1 5.8229 1.7721 1.2420 40 1 5.6136 3.5399 1.2335 41 1 4.4683 2.5125 2.1279 42 1 4.2038 -2.0525 0.0104 43 1 3.1756 -3.6241 -0.1948 44 1 1.7953 -4.7728 2.0589 45 1 0.3022 -5.6418 1.5781 46 1 0.2224 -7.7344 0.8030 47 1 1.6358 -8.8083 0.5586 48 1 0.4526 -6.9392 -1.3605 49 1 1.8685 -8.0122 -1.6043 50 1 4.7986 -7.7195 3.4620 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097984477.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:02:02 Heat of formation + Delta-G solvation = 31.279601 kcal Electronic energy + Delta-G solvation = -30852.324370 eV Core-core repulsion = 26879.864116 eV Total energy + Delta-G solvation = -3972.460254 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.55971 -41.17212 -39.81414 -36.75225 -35.87517 -35.01323 -34.39309 -32.94556 -30.95662 -30.57779 -29.95732 -28.83578 -28.07991 -26.39068 -26.01228 -24.46828 -23.28888 -21.77848 -21.54496 -21.23373 -20.33334 -19.13016 -18.84759 -18.65849 -17.29512 -17.05255 -16.77817 -16.60280 -15.95243 -15.80003 -15.43511 -15.29928 -15.20982 -14.94869 -14.53274 -14.30624 -14.22180 -13.73744 -13.68667 -13.64900 -13.43038 -13.00033 -12.99264 -12.89492 -12.86341 -12.75203 -12.68451 -12.26213 -12.18643 -12.07463 -11.95038 -11.90818 -11.87329 -11.70116 -11.67951 -11.14838 -10.92932 -10.91309 -10.63517 -10.62687 -10.44709 -9.95209 -8.85902 -7.74843 -5.14347 -0.71063 -0.14225 1.49763 1.50775 1.58059 1.72076 2.08121 2.51022 2.58939 2.66263 2.87379 3.24103 3.38784 3.46271 3.57879 3.76597 3.85633 4.01757 4.02892 4.10261 4.14084 4.28766 4.40481 4.47040 4.47278 4.51354 4.64686 4.65568 4.70108 4.74606 4.79839 4.84043 4.85646 4.91981 4.92894 4.97579 5.07276 5.11875 5.19091 5.20464 5.29585 5.30368 5.40202 5.40402 5.53033 5.59132 5.70982 5.76953 5.91664 6.29250 6.49796 6.87294 7.07085 7.11544 7.74390 8.59690 9.32322 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.010678 B = 0.003434 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2621.596056 B = 8151.930335 C =10103.848690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.228 3.772 3 N -0.534 5.534 4 C 0.337 3.663 5 C -0.029 4.029 6 C -0.135 4.135 7 C -0.137 4.137 8 N -0.528 5.528 9 C 0.191 3.809 10 C -0.260 4.260 11 C 0.569 3.431 12 O -0.555 6.555 13 N -0.696 5.696 14 C 0.142 3.858 15 H 0.095 0.905 16 C -0.132 4.132 17 C 0.139 3.861 18 H 0.114 0.886 19 C -0.133 4.133 20 C -0.119 4.119 21 C 0.126 3.874 22 H 0.104 0.896 23 N -0.610 5.610 24 C -0.212 4.212 25 H 0.087 0.913 26 C -0.065 4.065 27 N -0.947 5.947 28 Si 0.969 3.031 29 H -0.291 1.291 30 H -0.303 1.303 31 H -0.271 1.271 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.058 0.942 37 H 0.049 0.951 38 H 0.091 0.909 39 H 0.057 0.943 40 H 0.092 0.908 41 H 0.045 0.955 42 H 0.185 0.815 43 H 0.404 0.596 44 H 0.033 0.967 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.036 0.964 48 H 0.084 0.916 49 H 0.058 0.942 50 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.952 16.603 -7.870 18.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.081 3.919 3 N -0.248 5.248 4 C 0.071 3.929 5 C -0.050 4.050 6 C -0.193 4.193 7 C -0.195 4.195 8 N -0.242 5.242 9 C 0.024 3.976 10 C -0.267 4.267 11 C 0.355 3.645 12 O -0.436 6.436 13 N -0.345 5.345 14 C 0.035 3.965 15 H 0.112 0.888 16 C -0.173 4.173 17 C 0.033 3.967 18 H 0.131 0.869 19 C -0.172 4.172 20 C -0.158 4.158 21 C 0.019 3.981 22 H 0.122 0.878 23 N -0.331 5.331 24 C -0.341 4.341 25 H 0.104 0.896 26 C -0.257 4.257 27 N -0.597 5.597 28 Si 0.799 3.201 29 H -0.219 1.219 30 H -0.230 1.230 31 H -0.196 1.196 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.117 0.883 35 H 0.125 0.875 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.110 0.890 39 H 0.076 0.924 40 H 0.111 0.889 41 H 0.064 0.936 42 H 0.201 0.799 43 H 0.240 0.760 44 H 0.052 0.948 45 H 0.088 0.912 46 H 0.090 0.910 47 H 0.055 0.945 48 H 0.102 0.898 49 H 0.077 0.923 50 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.048 17.347 -7.669 19.394 hybrid contribution 1.082 -1.471 0.656 1.940 sum -2.966 15.877 -7.013 17.608 Atomic orbital electron populations 1.21030 0.85523 1.04770 1.04645 1.22288 0.98907 0.86387 0.84295 1.68332 1.09869 1.29576 1.17067 1.24109 0.86592 0.95831 0.86352 1.20219 0.97375 0.88817 0.98552 1.21774 0.99078 1.03783 0.94704 1.21784 0.99118 1.03770 0.94855 1.68288 1.41298 0.98508 1.16148 1.23784 0.90951 0.97068 0.85830 1.21590 0.96533 0.95986 1.12626 1.17838 0.86713 0.83438 0.76504 1.90688 1.14079 1.87376 1.51416 1.45880 1.11152 1.05345 1.72127 1.22538 0.95817 0.81596 0.96506 0.88759 1.23368 0.99246 0.98791 0.95867 1.23660 0.85354 0.91810 0.95893 0.86867 1.22967 0.99081 0.98593 0.96557 1.22837 0.99217 0.97441 0.96347 1.23381 0.90579 0.92773 0.91373 0.87779 1.46712 1.00594 1.74347 1.11433 1.19342 0.81239 1.35170 0.98370 0.89573 1.25368 1.01079 1.02896 0.96388 1.69715 1.33771 1.51632 1.04566 0.85200 0.81037 0.76515 0.77303 1.21857 1.22994 1.19579 0.89190 0.89125 0.88309 0.87470 0.92325 0.93207 0.88994 0.92433 0.88885 0.93616 0.79859 0.76035 0.94845 0.91236 0.91046 0.94502 0.89780 0.92282 0.94613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.43 8.99 71.24 0.64 -1.78 16 2 C 0.23 6.23 6.87 42.92 0.29 6.53 16 3 N -0.53 -14.22 10.22 -175.03 -1.79 -16.01 16 4 C 0.34 8.45 6.34 138.71 0.88 9.33 16 5 C -0.03 -0.53 3.25 -11.54 -0.04 -0.57 16 6 C -0.14 -2.05 9.09 71.98 0.65 -1.39 16 7 C -0.14 -2.23 9.09 71.98 0.65 -1.58 16 8 N -0.53 -14.12 9.77 -186.79 -1.82 -15.95 16 9 C 0.19 5.12 10.80 85.07 0.92 6.04 16 10 C -0.26 -7.39 5.91 -19.91 -0.12 -7.51 16 11 C 0.57 17.79 7.73 86.78 0.67 18.46 16 12 O -0.56 -19.15 13.22 -3.89 -0.05 -19.20 16 13 N -0.70 -21.79 5.04 -437.68 -2.21 -24.00 16 14 C 0.14 4.72 2.76 46.62 0.13 4.85 16 15 H 0.09 2.98 7.29 -2.38 -0.02 2.96 16 16 C -0.13 -5.11 6.26 32.35 0.20 -4.90 16 17 C 0.14 6.15 4.73 46.36 0.22 6.37 16 18 H 0.11 6.01 5.52 -2.39 -0.01 5.99 16 19 C -0.13 -4.90 6.44 32.21 0.21 -4.69 16 20 C -0.12 -3.79 6.44 32.21 0.21 -3.58 16 21 C 0.13 4.38 5.05 46.25 0.23 4.62 16 22 H 0.10 3.30 8.14 -2.38 -0.02 3.28 16 23 N -0.61 -27.35 2.99 -614.35 -1.84 -29.18 16 24 C -0.21 -10.65 10.59 84.03 0.89 -9.76 16 25 H 0.09 4.08 7.83 -2.91 -0.02 4.06 16 26 C -0.06 -3.42 5.50 84.86 0.47 -2.96 16 27 N -0.95 -53.62 10.47 21.65 0.23 -53.39 16 28 Si 0.97 43.68 29.55 68.60 2.03 45.70 16 29 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 30 H -0.30 -14.12 7.11 99.48 0.71 -13.42 16 31 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 32 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.10 2.54 5.96 -2.39 -0.01 2.52 16 35 H 0.11 1.71 8.09 -2.39 -0.02 1.69 16 36 H 0.06 1.02 8.01 -2.39 -0.02 1.01 16 37 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 38 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 39 H 0.06 1.08 8.01 -2.39 -0.02 1.06 16 40 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.04 0.81 8.14 -2.39 -0.02 0.80 16 42 H 0.18 4.39 6.58 -2.91 -0.02 4.37 16 43 H 0.40 12.20 6.81 -92.71 -0.63 11.57 16 44 H 0.03 1.44 7.98 -2.39 -0.02 1.42 16 45 H 0.07 2.45 7.82 -2.39 -0.02 2.43 16 46 H 0.07 2.28 7.82 -2.39 -0.02 2.26 16 47 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 48 H 0.08 2.19 7.82 -2.39 -0.02 2.17 16 49 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 50 H 0.24 13.72 8.31 -92.71 -0.77 12.95 16 Total: -1.00 -62.78 395.50 1.98 -60.80 By element: Atomic # 1 Polarization: 33.45 SS G_CDS: 0.32 Total: 33.77 kcal Atomic # 6 Polarization: 10.35 SS G_CDS: 7.11 Total: 17.46 kcal Atomic # 7 Polarization: -131.11 SS G_CDS: -7.43 Total: -138.54 kcal Atomic # 8 Polarization: -19.15 SS G_CDS: -0.05 Total: -19.20 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.70 kcal Total: -62.78 1.98 -60.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097984477.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.079 kcal (2) G-P(sol) polarization free energy of solvation -62.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds