Wall clock time and date at job start Wed Apr 1 2020 04:02:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.32139 * 119.90173 * 2 1 4 4 C 1.32082 * 120.07001 * 180.25056 * 3 2 1 5 5 C 1.50700 * 120.06191 * 179.75425 * 4 3 2 6 6 C 1.39438 * 119.87123 * 359.73923 * 4 3 2 7 7 C 1.48150 * 120.09529 * 180.02562 * 6 4 3 8 8 O 1.21515 * 120.00227 * 354.20887 * 7 6 4 9 9 N 1.34783 * 120.00126 * 174.21391 * 7 6 4 10 10 C 1.46496 * 120.00119 * 179.97438 * 9 7 6 11 11 C 1.54326 * 111.69393 * 298.98514 * 10 9 7 12 12 C 1.55050 * 103.93629 * 262.79050 * 11 10 9 13 13 C 1.55064 * 102.10929 * 319.94283 * 12 11 10 14 14 C 1.54321 * 103.93559 * 40.05684 * 13 12 11 15 15 H 1.09006 * 111.01465 * 96.80976 * 14 13 12 16 16 C 1.53774 * 109.79116 * 221.69188 * 14 13 12 17 17 N 1.47213 * 106.38301 * 95.21872 * 16 14 13 18 18 C 1.36932 * 126.70540 * 211.28631 * 17 16 14 19 19 H 1.07996 * 120.00079 * 180.02562 * 18 17 16 20 20 C 1.38813 * 119.99744 * 0.02562 * 18 17 16 21 21 N 1.31620 * 119.99940 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99666 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47423 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47164 * 120.00137 * 22 20 18 25 25 H 1.48503 * 109.46982 * 239.99709 * 22 20 18 26 26 C 1.48680 * 107.09040 * 30.74259 * 17 16 14 27 27 N 1.33004 * 119.80921 * 359.97438 * 6 4 3 28 28 C 1.31800 * 119.92677 * 359.97438 * 27 6 4 29 29 C 1.50691 * 119.93853 * 179.97438 * 28 27 6 30 30 H 1.08999 * 109.47117 * 270.26679 * 1 2 3 31 31 H 1.09001 * 109.46936 * 30.26724 * 1 2 3 32 32 H 1.08997 * 109.46864 * 150.26512 * 1 2 3 33 33 H 1.08992 * 109.47235 * 263.27504 * 5 4 3 34 34 H 1.09003 * 109.47023 * 23.28054 * 5 4 3 35 35 H 1.09002 * 109.46670 * 143.27754 * 5 4 3 36 36 H 0.97001 * 119.99597 * 0.02562 * 9 7 6 37 37 H 1.08998 * 110.53034 * 21.39747 * 11 10 9 38 38 H 1.09000 * 110.53351 * 144.16900 * 11 10 9 39 39 H 1.09000 * 110.90854 * 78.14315 * 12 11 10 40 40 H 1.09001 * 110.90048 * 201.70963 * 12 11 10 41 41 H 1.08991 * 110.53377 * 158.67347 * 13 12 11 42 42 H 1.08997 * 110.53134 * 281.30453 * 13 12 11 43 43 H 1.09010 * 110.07236 * 214.45053 * 16 14 13 44 44 H 1.09003 * 110.07253 * 335.98671 * 16 14 13 45 45 H 0.97005 * 119.99437 * 180.02562 * 21 20 18 46 46 H 1.09002 * 110.90812 * 210.53374 * 26 17 16 47 47 H 1.08995 * 109.94812 * 88.51605 * 26 17 16 48 48 H 1.09004 * 109.47374 * 89.99743 * 29 28 27 49 49 H 1.08999 * 109.47278 * 209.99726 * 29 28 27 50 50 H 1.08997 * 109.47449 * 330.00438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1658 1.1455 0.0000 4 6 3.4866 1.1494 -0.0050 5 6 4.2377 2.4559 -0.0106 6 6 4.1846 -0.0577 -0.0048 7 6 5.6661 -0.0591 -0.0098 8 8 6.2744 0.9870 -0.1203 9 7 6.3394 -1.2208 0.1081 10 6 7.8043 -1.2223 0.1026 11 6 8.3703 -0.6611 -1.2189 12 6 8.6794 -1.9265 -2.0600 13 6 9.2639 -2.8902 -0.9950 14 6 8.3781 -2.6536 0.2463 15 1 7.5878 -3.4016 0.3109 16 6 9.2529 -2.6152 1.5105 17 7 9.5427 -1.1958 1.7719 18 6 10.6741 -0.6843 2.3491 19 1 10.7737 0.3818 2.4904 20 6 11.6932 -1.5360 2.7528 21 7 11.5716 -2.8353 2.5811 22 14 13.2364 -0.8383 3.5409 23 1 13.1266 0.6405 3.6201 24 1 13.3904 -1.3977 4.9078 25 1 14.4194 -1.2031 2.7206 26 6 8.3783 -0.4140 1.2782 27 7 3.5166 -1.2078 0.0010 28 6 2.1986 -1.2026 0.0070 29 6 1.4415 -2.5055 0.0129 30 1 -0.3633 0.0048 1.0276 31 1 -0.3633 0.8876 -0.5180 32 1 -0.3633 -0.8923 -0.5097 33 1 4.5192 2.7087 -1.0327 34 1 3.6019 3.2422 0.3963 35 1 5.1352 2.3615 0.6007 36 1 5.8538 -2.0560 0.1958 37 1 7.6273 -0.0410 -1.7203 38 1 9.2819 -0.0929 -1.0337 39 1 7.7682 -2.3357 -2.4963 40 1 9.4154 -1.7088 -2.8339 41 1 9.1842 -3.9242 -1.3302 42 1 10.3023 -2.6379 -0.7801 43 1 8.7126 -3.0481 2.3526 44 1 10.1807 -3.1613 1.3401 45 1 12.2836 -3.4305 2.8635 46 1 8.6893 0.5734 0.9368 47 1 7.6322 -0.3199 2.0671 48 1 1.2636 -2.8177 1.0420 49 1 0.4871 -2.3735 -0.4968 50 1 2.0260 -3.2679 -0.5020 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098933646.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:02:39 Heat of formation + Delta-G solvation = 37.112338 kcal Electronic energy + Delta-G solvation = -31272.808066 eV Core-core repulsion = 27300.600738 eV Total energy + Delta-G solvation = -3972.207328 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.67650 -40.04880 -38.12786 -35.32037 -34.51944 -34.34241 -33.34139 -31.37688 -30.35928 -29.60643 -29.09226 -27.77049 -26.26775 -24.63521 -24.39468 -23.77177 -22.38082 -21.22158 -20.54476 -19.65458 -18.89803 -18.28727 -17.45067 -16.63231 -16.04984 -15.57701 -15.40520 -14.97637 -14.71425 -14.51524 -14.12704 -13.74841 -13.57014 -13.46662 -13.44180 -13.39339 -13.24146 -13.07791 -12.89057 -12.63475 -12.40811 -12.28330 -12.12378 -11.88330 -11.71601 -11.30847 -11.05141 -10.97126 -10.89228 -10.64949 -10.56053 -10.27843 -10.22851 -10.02472 -9.95195 -9.92242 -9.80995 -9.60798 -9.14993 -9.12063 -8.72118 -8.57375 -6.84188 -5.62140 -3.06162 0.22259 0.81125 2.72034 3.13350 3.41272 3.47306 3.49575 3.56833 3.71541 3.74098 4.12010 4.38234 4.50809 4.66690 4.82155 4.93419 4.98678 5.06374 5.14050 5.15839 5.24894 5.37137 5.38484 5.49622 5.51827 5.60994 5.64934 5.66727 5.78401 5.86213 5.89424 5.98883 6.02903 6.13241 6.14875 6.22191 6.32604 6.38079 6.45342 6.57695 6.64553 6.77893 6.84289 6.95493 6.97826 7.12368 7.43987 7.45287 7.63446 7.77047 7.85986 8.34267 8.43217 9.23534 9.82654 10.50099 11.39182 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.017055 B = 0.002860 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.396324 B = 9786.837187 C =10169.149713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.103 3.897 3 N -0.444 5.444 4 C 0.138 3.862 5 C -0.106 4.106 6 C 0.028 3.972 7 C 0.572 3.428 8 O -0.517 6.517 9 N -0.687 5.687 10 C 0.156 3.844 11 C -0.112 4.112 12 C -0.125 4.125 13 C -0.108 4.108 14 C -0.112 4.112 15 H 0.069 0.931 16 C 0.142 3.858 17 N -0.595 5.595 18 C -0.212 4.212 19 H 0.079 0.921 20 C -0.014 4.014 21 N -0.923 5.923 22 Si 0.915 3.085 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.139 3.861 27 N -0.407 5.407 28 C 0.066 3.934 29 C -0.102 4.102 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.070 0.930 35 H 0.111 0.889 36 H 0.405 0.595 37 H 0.064 0.936 38 H 0.080 0.920 39 H 0.056 0.944 40 H 0.060 0.940 41 H 0.056 0.944 42 H 0.080 0.920 43 H 0.004 0.996 44 H 0.130 0.870 45 H 0.251 0.749 46 H 0.055 0.945 47 H 0.016 0.984 48 H 0.084 0.916 49 H 0.082 0.918 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.360 0.835 -8.661 23.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.040 4.040 3 N -0.160 5.160 4 C -0.002 4.002 5 C -0.163 4.163 6 C -0.113 4.113 7 C 0.355 3.645 8 O -0.394 6.394 9 N -0.336 5.336 10 C 0.070 3.930 11 C -0.150 4.150 12 C -0.163 4.163 13 C -0.146 4.146 14 C -0.133 4.133 15 H 0.087 0.913 16 C 0.017 3.983 17 N -0.319 5.319 18 C -0.341 4.341 19 H 0.097 0.903 20 C -0.209 4.209 21 N -0.572 5.572 22 Si 0.746 3.254 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.011 3.989 27 N -0.124 5.124 28 C -0.077 4.077 29 C -0.159 4.159 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.088 0.912 35 H 0.129 0.871 36 H 0.240 0.760 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.099 0.901 43 H 0.022 0.978 44 H 0.147 0.853 45 H 0.062 0.938 46 H 0.074 0.926 47 H 0.034 0.966 48 H 0.102 0.898 49 H 0.101 0.899 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -20.611 1.546 -8.616 22.392 hybrid contribution 0.291 -0.180 0.533 0.634 sum -20.319 1.365 -8.083 21.911 Atomic orbital electron populations 1.20832 0.87507 1.04188 1.03793 1.22399 0.98522 0.88979 0.94057 1.68309 1.07938 1.28789 1.10946 1.22377 0.89645 0.96810 0.91323 1.21069 1.00169 0.90397 1.04661 1.22117 0.96103 0.90045 1.03072 1.17535 0.84528 0.84693 0.77696 1.90749 1.68166 1.30773 1.49670 1.45958 1.07218 1.08758 1.71696 1.21945 0.76759 0.97425 0.96896 1.22659 1.01024 0.97040 0.94275 1.22602 0.99735 0.96404 0.97554 1.22433 1.00501 0.97996 0.93666 1.23028 0.97832 0.93116 0.99277 0.91256 1.21983 0.99469 0.87198 0.89649 1.44810 1.15580 1.01593 1.69930 1.19169 0.92157 0.92186 1.30566 0.90306 1.24753 0.98738 0.95445 1.01921 1.69597 1.32994 1.01392 1.53239 0.85982 0.82917 0.77969 0.78581 1.20530 1.21840 1.21777 1.21831 0.90112 0.94729 0.92188 1.68158 1.08529 1.28741 1.06983 1.22092 0.90117 0.96891 0.98624 1.20767 0.99217 0.92235 1.03717 0.89546 0.89969 0.89645 0.89509 0.91158 0.87113 0.75962 0.91772 0.90174 0.92543 0.92086 0.92517 0.90119 0.97845 0.85265 0.93763 0.92634 0.96615 0.89793 0.89906 0.89952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 9.78 36.01 0.35 -0.28 16 2 C 0.10 1.07 6.79 -82.27 -0.56 0.51 16 3 N -0.44 -5.65 10.34 -5.23 -0.05 -5.70 16 4 C 0.14 1.91 6.82 -82.04 -0.56 1.35 16 5 C -0.11 -1.33 8.88 36.01 0.32 -1.01 16 6 C 0.03 0.41 6.75 -82.84 -0.56 -0.15 16 7 C 0.57 9.34 7.04 -12.19 -0.09 9.26 16 8 O -0.52 -9.25 11.25 5.35 0.06 -9.19 16 9 N -0.69 -11.15 5.18 -46.51 -0.24 -11.39 16 10 C 0.16 2.89 0.93 -129.73 -0.12 2.77 16 11 C -0.11 -1.97 5.50 -24.95 -0.14 -2.11 16 12 C -0.13 -1.96 6.92 -24.56 -0.17 -2.13 16 13 C -0.11 -1.89 6.25 -24.95 -0.16 -2.04 16 14 C -0.11 -2.11 3.63 -88.53 -0.32 -2.44 16 15 H 0.07 1.17 7.71 -51.93 -0.40 0.77 16 16 C 0.14 3.42 5.62 -3.25 -0.02 3.40 16 17 N -0.59 -15.30 3.42 -169.93 -0.58 -15.88 16 18 C -0.21 -5.93 10.33 -15.06 -0.16 -6.09 16 19 H 0.08 2.16 7.83 -52.49 -0.41 1.75 16 20 C -0.01 -0.39 5.49 -17.43 -0.10 -0.48 16 21 N -0.92 -26.44 10.08 55.49 0.56 -25.88 16 22 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 26 C 0.14 3.09 5.36 -2.43 -0.01 3.08 16 27 N -0.41 -5.37 9.65 -5.89 -0.06 -5.43 16 28 C 0.07 0.70 6.79 -82.43 -0.56 0.14 16 29 C -0.10 -0.66 9.79 36.00 0.35 -0.31 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.31 5.94 -51.93 -0.31 0.00 16 33 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.11 1.57 5.84 -51.93 -0.30 1.27 16 36 H 0.40 5.98 7.66 -40.82 -0.31 5.66 16 37 H 0.06 1.12 6.64 -51.93 -0.35 0.77 16 38 H 0.08 1.56 7.57 -51.93 -0.39 1.17 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.08 1.64 7.62 -51.93 -0.40 1.24 16 43 H 0.00 0.09 8.14 -51.92 -0.42 -0.33 16 44 H 0.13 3.44 4.93 -51.93 -0.26 3.18 16 45 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 46 H 0.06 1.28 7.52 -51.93 -0.39 0.89 16 47 H 0.02 0.37 8.05 -51.93 -0.42 -0.04 16 48 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 49 H 0.08 0.33 5.93 -51.93 -0.31 0.02 16 50 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 386.43 15.07 5.82 5.82 Total: -1.00 -31.53 386.43 -9.60 -41.14 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -7.60 Total: 5.92 kcal Atomic # 6 Polarization: 5.97 SS G_CDS: -2.49 Total: 3.48 kcal Atomic # 7 Polarization: -63.91 SS G_CDS: -0.37 Total: -64.28 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.06 Total: -9.19 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.53 -9.60 -41.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098933646.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.251 kcal (2) G-P(sol) polarization free energy of solvation -31.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds