Wall clock time and date at job start Wed Apr 1 2020 03:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31880 * 118.95422 * 2 1 4 4 C 1.32136 * 120.96757 * 179.97438 * 3 2 1 5 5 C 1.39969 * 118.92219 * 0.02562 * 4 3 2 6 6 C 1.47831 * 120.93796 * 179.97438 * 5 4 3 7 7 O 1.21551 * 120.00024 * 222.99688 * 6 5 4 8 8 N 1.34775 * 120.00072 * 43.00294 * 6 5 4 9 9 C 1.48118 * 127.84255 * 355.27309 * 8 6 5 10 10 C 1.54332 * 104.69104 * 140.28383 * 9 8 6 11 11 H 1.09004 * 111.85138 * 261.51574 * 10 9 8 12 12 C 1.54157 * 108.86011 * 137.44835 * 10 9 8 13 13 C 1.54843 * 104.32921 * 223.79030 * 12 10 9 14 14 C 1.54838 * 102.73358 * 38.18570 * 13 12 10 15 15 C 1.54162 * 104.32983 * 321.81679 * 14 13 12 16 16 C 1.52997 * 111.82070 * 261.24393 * 15 14 13 17 17 N 1.46498 * 109.47386 * 298.98461 * 16 15 14 18 18 C 1.36938 * 120.00170 * 179.97438 * 17 16 15 19 19 H 1.07991 * 120.00283 * 0.02562 * 18 17 16 20 20 C 1.38818 * 119.99765 * 180.02562 * 18 17 16 21 21 N 1.31621 * 120.00371 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99781 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47086 * 59.99807 * 22 20 18 24 24 H 1.48500 * 109.47118 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.46993 * 300.00061 * 22 20 18 26 26 C 1.48114 * 127.84260 * 175.31003 * 8 6 5 27 27 C 1.39936 * 118.12222 * 0.26603 * 5 4 3 28 28 C 1.50689 * 120.53678 * 179.70545 * 27 5 4 29 29 N 1.31859 * 118.94834 * 179.97438 * 2 1 3 30 30 H 1.09006 * 109.47089 * 89.99519 * 1 2 3 31 31 H 1.08998 * 109.46981 * 209.99283 * 1 2 3 32 32 H 1.08999 * 109.46601 * 329.99903 * 1 2 3 33 33 H 1.07998 * 120.53778 * 180.02562 * 4 3 2 34 34 H 1.09002 * 110.39313 * 21.48292 * 9 8 6 35 35 H 1.08997 * 110.39387 * 259.08503 * 9 8 6 36 36 H 1.09003 * 110.46767 * 105.07632 * 12 10 9 37 37 H 1.09002 * 110.57097 * 342.55638 * 12 10 9 38 38 H 1.08993 * 110.75599 * 279.87878 * 13 12 10 39 39 H 1.09006 * 110.75980 * 156.49770 * 13 12 10 40 40 H 1.09008 * 110.46439 * 80.52410 * 14 13 12 41 41 H 1.09000 * 110.46341 * 203.09888 * 14 13 12 42 42 H 1.09000 * 109.47072 * 58.98278 * 16 15 14 43 43 H 1.08998 * 109.47056 * 178.98187 * 16 15 14 44 44 H 0.97000 * 119.99791 * 359.97438 * 17 16 15 45 45 H 0.96992 * 120.00262 * 180.02562 * 21 20 18 46 46 H 1.09005 * 110.39367 * 338.51839 * 26 8 6 47 47 H 1.09003 * 110.39784 * 100.79978 * 26 8 6 48 48 H 1.09006 * 109.47326 * 84.37165 * 28 27 5 49 49 H 1.08999 * 109.47073 * 204.36885 * 28 27 5 50 50 H 1.08999 * 109.47741 * 324.37063 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1455 1.1540 0.0000 4 6 3.4660 1.2004 0.0005 5 6 4.1856 -0.0002 0.0005 6 6 5.6639 -0.0003 0.0005 7 8 6.2716 -0.7702 -0.7174 8 7 6.3378 0.8533 0.7965 9 6 5.7827 1.9208 1.6603 10 6 6.6294 1.8612 2.9493 11 1 6.1267 1.3035 3.7395 12 6 6.9687 3.2991 3.3895 13 6 8.4662 3.2375 3.7784 14 6 9.0566 2.2820 2.7126 15 6 7.9665 1.2098 2.5157 16 6 8.2678 -0.0608 3.3130 17 7 9.5363 -0.6343 2.8567 18 6 10.0141 -1.7825 3.4298 19 1 9.4557 -2.2655 4.2179 20 6 11.2163 -2.3256 2.9977 21 7 11.8967 -1.7373 2.0368 22 14 11.8678 -3.8923 3.7791 23 1 10.8866 -4.9893 3.5809 24 1 13.1583 -4.2624 3.1444 25 1 12.0759 -3.6710 5.2326 26 6 7.8017 0.9372 1.0056 27 6 3.4661 -1.2004 -0.0058 28 6 4.1856 -2.5244 -0.0128 29 7 2.1452 -1.1538 0.0005 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5137 32 1 -0.3632 0.8900 0.5139 33 1 3.9817 2.1493 0.0009 34 1 4.7348 1.7214 1.8847 35 1 5.8908 2.8930 1.1795 36 1 6.3634 3.5874 4.2490 37 1 6.8172 3.9975 2.5665 38 1 8.5887 2.8231 4.7790 39 1 8.9244 4.2242 3.7089 40 1 9.2380 2.8165 1.7801 41 1 9.9774 1.8267 3.0772 42 1 8.3401 0.1838 4.3727 43 1 7.4665 -0.7838 3.1608 44 1 10.0377 -0.2007 2.1485 45 1 12.7365 -2.1170 1.7347 46 1 8.2786 -0.0050 0.7356 47 1 8.2225 1.7560 0.4220 48 1 4.4477 -2.8009 1.0085 49 1 3.5366 -3.2884 -0.4408 50 1 5.0930 -2.4418 -0.6110 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112547838.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:35 Heat of formation + Delta-G solvation = 26.740043 kcal Electronic energy + Delta-G solvation = -31158.697648 eV Core-core repulsion = 27186.040544 eV Total energy + Delta-G solvation = -3972.657104 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.60393 -40.41946 -38.55750 -35.18351 -34.59395 -34.32833 -33.68646 -31.65286 -29.86801 -29.72830 -29.36070 -28.32587 -25.72115 -25.64397 -24.31175 -23.42138 -22.61733 -22.09263 -20.44306 -19.68771 -18.59272 -18.19590 -17.49859 -16.70280 -16.30905 -16.20076 -15.59971 -15.49373 -15.14612 -14.61120 -14.38358 -14.10568 -13.79884 -13.55302 -13.37941 -13.28617 -13.14573 -13.02741 -12.85430 -12.69394 -12.63039 -12.51338 -12.21679 -12.04441 -11.77304 -11.56781 -11.22858 -11.00247 -10.84494 -10.81427 -10.78225 -10.59202 -10.57415 -10.38361 -10.26195 -9.98678 -9.76461 -9.63278 -9.56823 -9.54156 -8.86482 -8.68874 -6.90840 -5.74951 -3.03468 0.29774 0.76648 2.58602 2.85968 3.43050 3.45483 3.50090 3.50839 3.58156 3.74646 4.12215 4.19957 4.39002 4.57447 4.60410 4.70877 4.75246 4.87021 5.07366 5.10408 5.19576 5.22033 5.29903 5.34491 5.36728 5.48024 5.49681 5.53481 5.54427 5.59283 5.61731 5.69201 5.75862 5.84055 5.90403 5.94014 6.03929 6.10910 6.15038 6.18346 6.21858 6.36458 6.41820 6.46102 6.65318 6.68219 6.74128 6.80825 7.51283 7.70906 7.76601 8.07927 8.43670 9.55147 10.11485 10.46448 11.47734 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011229 B = 0.003386 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.949897 B = 8266.781375 C = 9970.401177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.332 3.668 3 N -0.527 5.527 4 C 0.184 3.816 5 C -0.239 4.239 6 C 0.588 3.412 7 O -0.519 6.519 8 N -0.611 5.611 9 C 0.098 3.902 10 C -0.098 4.098 11 H 0.089 0.911 12 C -0.115 4.115 13 C -0.121 4.121 14 C -0.114 4.114 15 C -0.072 4.072 16 C 0.175 3.825 17 N -0.728 5.728 18 C -0.240 4.240 19 H 0.068 0.932 20 C -0.011 4.011 21 N -0.932 5.932 22 Si 0.906 3.094 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.287 1.287 26 C 0.115 3.885 27 C 0.237 3.763 28 C -0.128 4.128 29 N -0.522 5.522 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.172 0.828 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.068 0.932 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.086 0.914 42 H 0.023 0.977 43 H 0.016 0.984 44 H 0.384 0.616 45 H 0.256 0.744 46 H 0.100 0.900 47 H 0.072 0.928 48 H 0.090 0.910 49 H 0.084 0.916 50 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.728 11.526 -1.722 22.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.066 3.934 3 N -0.242 5.242 4 C 0.017 3.983 5 C -0.247 4.247 6 C 0.375 3.625 7 O -0.395 6.395 8 N -0.344 5.344 9 C -0.025 4.025 10 C -0.117 4.117 11 H 0.107 0.893 12 C -0.153 4.153 13 C -0.158 4.158 14 C -0.152 4.152 15 C -0.074 4.074 16 C 0.048 3.952 17 N -0.373 5.373 18 C -0.371 4.371 19 H 0.086 0.914 20 C -0.207 4.207 21 N -0.581 5.581 22 Si 0.737 3.263 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.006 4.006 27 C 0.090 3.910 28 C -0.185 4.185 29 N -0.237 5.237 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.189 0.811 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.104 0.896 42 H 0.040 0.960 43 H 0.034 0.966 44 H 0.219 0.781 45 H 0.065 0.935 46 H 0.118 0.882 47 H 0.090 0.910 48 H 0.108 0.892 49 H 0.103 0.897 50 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -20.436 10.871 -2.100 23.242 hybrid contribution 1.453 -0.624 0.237 1.599 sum -18.983 10.246 -1.863 21.652 Atomic orbital electron populations 1.20620 0.85358 1.04409 1.04095 1.23483 0.98419 0.83394 0.88122 1.68292 1.09497 1.30090 1.16282 1.23498 0.89517 0.97606 0.87649 1.21548 0.96058 0.96517 1.10584 1.17294 0.85350 0.80006 0.79826 1.90798 1.68985 1.39471 1.40237 1.48900 1.09021 1.33289 1.43156 1.22826 0.98157 0.90710 0.90796 1.22740 0.95735 0.96931 0.96328 0.89265 1.22442 0.97096 0.95002 1.00784 1.22479 0.94576 0.99238 0.99552 1.22483 0.98839 0.95159 0.98703 1.22261 0.93941 0.96860 0.94304 1.20488 0.89619 0.90200 0.94921 1.42336 1.21148 1.29061 1.44757 1.19132 1.02670 1.00637 1.14650 0.91411 1.24710 0.97772 0.99245 0.99002 1.69634 1.16456 1.41095 1.30867 0.86289 0.78075 0.83457 0.78487 1.21300 1.21697 1.21344 1.22686 0.78920 1.03969 0.95024 1.21911 0.88751 0.95501 0.84799 1.21170 1.01554 0.90930 1.04854 1.68258 1.09075 1.30065 1.16296 0.89326 0.89372 0.89372 0.81055 0.90914 0.90361 0.91727 0.91421 0.91315 0.91766 0.91748 0.89571 0.95970 0.96602 0.78115 0.93456 0.88170 0.90994 0.89185 0.89723 0.87038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.63 10.31 36.01 0.37 -0.26 16 2 C 0.33 3.77 7.64 -157.07 -1.20 2.57 16 3 N -0.53 -6.09 10.31 -10.39 -0.11 -6.20 16 4 C 0.18 2.07 9.12 -16.77 -0.15 1.92 16 5 C -0.24 -3.22 5.44 -104.69 -0.57 -3.79 16 6 C 0.59 9.21 7.19 -12.34 -0.09 9.12 16 7 O -0.52 -9.98 14.92 5.32 0.08 -9.90 16 8 N -0.61 -8.59 3.31 -170.54 -0.57 -9.16 16 9 C 0.10 1.02 5.10 -2.45 -0.01 1.01 16 10 C -0.10 -1.12 3.54 -88.30 -0.31 -1.43 16 11 H 0.09 1.05 7.92 -51.93 -0.41 0.64 16 12 C -0.12 -1.09 6.36 -25.15 -0.16 -1.25 16 13 C -0.12 -1.35 6.90 -24.79 -0.17 -1.53 16 14 C -0.11 -1.60 5.69 -25.16 -0.14 -1.74 16 15 C -0.07 -1.08 0.62 -152.19 -0.09 -1.17 16 16 C 0.18 3.43 5.24 -4.04 -0.02 3.41 16 17 N -0.73 -17.87 4.63 -59.91 -0.28 -18.15 16 18 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 19 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 20 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 21 N -0.93 -28.01 13.06 55.49 0.72 -27.29 16 22 Si 0.91 22.55 29.55 -169.99 -5.02 17.52 16 23 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 26 C 0.12 1.83 5.94 -2.46 -0.01 1.81 16 27 C 0.24 3.24 6.86 -81.82 -0.56 2.68 16 28 C -0.13 -1.67 9.72 36.00 0.35 -1.32 16 29 N -0.52 -6.73 10.26 -6.67 -0.07 -6.80 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.17 1.48 6.73 -52.49 -0.35 1.13 16 34 H 0.07 0.69 6.05 -51.93 -0.31 0.38 16 35 H 0.08 0.65 7.19 -51.93 -0.37 0.28 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.07 0.55 7.18 -51.93 -0.37 0.18 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.82 7.18 -51.92 -0.37 0.45 16 41 H 0.09 1.48 7.16 -51.93 -0.37 1.11 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.38 9.85 6.68 -40.82 -0.27 9.58 16 45 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 46 H 0.10 2.02 7.06 -51.93 -0.37 1.65 16 47 H 0.07 1.03 7.19 -51.93 -0.37 0.65 16 48 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 49 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 50 H 0.11 1.67 5.67 -51.93 -0.29 1.38 16 LS Contribution 392.08 15.07 5.91 5.91 Total: -1.00 -33.12 392.08 -10.00 -43.12 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -7.65 Total: 8.13 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: -3.03 Total: 2.81 kcal Atomic # 7 Polarization: -67.30 SS G_CDS: -0.29 Total: -67.60 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.08 Total: -9.90 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.12 -10.00 -43.12 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112547838.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.864 kcal (2) G-P(sol) polarization free energy of solvation -33.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.124 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds