Wall clock time and date at job start Wed Apr 1 2020 03:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31880 * 118.95422 * 2 1 4 4 C 1.32136 * 120.96757 * 179.97438 * 3 2 1 5 5 C 1.39969 * 118.92219 * 0.02562 * 4 3 2 6 6 C 1.47831 * 120.93796 * 179.97438 * 5 4 3 7 7 O 1.21551 * 120.00024 * 222.99688 * 6 5 4 8 8 N 1.34775 * 120.00072 * 43.00294 * 6 5 4 9 9 C 1.48118 * 127.84255 * 355.27309 * 8 6 5 10 10 C 1.54332 * 104.69104 * 140.28383 * 9 8 6 11 11 H 1.09004 * 111.85138 * 261.51574 * 10 9 8 12 12 C 1.54157 * 108.86011 * 137.44835 * 10 9 8 13 13 C 1.54843 * 104.32921 * 223.79030 * 12 10 9 14 14 C 1.54838 * 102.73358 * 38.18570 * 13 12 10 15 15 C 1.54162 * 104.32983 * 321.81679 * 14 13 12 16 16 C 1.52997 * 111.82070 * 261.24393 * 15 14 13 17 17 N 1.46498 * 109.47386 * 298.98461 * 16 15 14 18 18 C 1.36938 * 120.00170 * 179.97438 * 17 16 15 19 19 H 1.07991 * 120.00283 * 0.02562 * 18 17 16 20 20 C 1.38818 * 119.99765 * 180.02562 * 18 17 16 21 21 N 1.31621 * 120.00371 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99781 * 180.02562 * 20 18 17 23 23 H 1.48504 * 109.47086 * 59.99807 * 22 20 18 24 24 H 1.48500 * 109.47118 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.46993 * 300.00061 * 22 20 18 26 26 C 1.48114 * 127.84260 * 175.31003 * 8 6 5 27 27 C 1.39936 * 118.12222 * 0.26603 * 5 4 3 28 28 C 1.50689 * 120.53678 * 179.70545 * 27 5 4 29 29 N 1.31859 * 118.94834 * 179.97438 * 2 1 3 30 30 H 1.09006 * 109.47089 * 89.99519 * 1 2 3 31 31 H 1.08998 * 109.46981 * 209.99283 * 1 2 3 32 32 H 1.08999 * 109.46601 * 329.99903 * 1 2 3 33 33 H 1.07998 * 120.53778 * 180.02562 * 4 3 2 34 34 H 1.09002 * 110.39313 * 21.48292 * 9 8 6 35 35 H 1.08997 * 110.39387 * 259.08503 * 9 8 6 36 36 H 1.09003 * 110.46767 * 105.07632 * 12 10 9 37 37 H 1.09002 * 110.57097 * 342.55638 * 12 10 9 38 38 H 1.08993 * 110.75599 * 279.87878 * 13 12 10 39 39 H 1.09006 * 110.75980 * 156.49770 * 13 12 10 40 40 H 1.09008 * 110.46439 * 80.52410 * 14 13 12 41 41 H 1.09000 * 110.46341 * 203.09888 * 14 13 12 42 42 H 1.09000 * 109.47072 * 58.98278 * 16 15 14 43 43 H 1.08998 * 109.47056 * 178.98187 * 16 15 14 44 44 H 0.97000 * 119.99791 * 359.97438 * 17 16 15 45 45 H 0.96992 * 120.00262 * 180.02562 * 21 20 18 46 46 H 1.09005 * 110.39367 * 338.51839 * 26 8 6 47 47 H 1.09003 * 110.39784 * 100.79978 * 26 8 6 48 48 H 1.09006 * 109.47326 * 84.37165 * 28 27 5 49 49 H 1.08999 * 109.47073 * 204.36885 * 28 27 5 50 50 H 1.08999 * 109.47741 * 324.37063 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1455 1.1540 0.0000 4 6 3.4660 1.2004 0.0005 5 6 4.1856 -0.0002 0.0005 6 6 5.6639 -0.0003 0.0005 7 8 6.2716 -0.7702 -0.7174 8 7 6.3378 0.8533 0.7965 9 6 5.7827 1.9208 1.6603 10 6 6.6294 1.8612 2.9493 11 1 6.1267 1.3035 3.7395 12 6 6.9687 3.2991 3.3895 13 6 8.4662 3.2375 3.7784 14 6 9.0566 2.2820 2.7126 15 6 7.9665 1.2098 2.5157 16 6 8.2678 -0.0608 3.3130 17 7 9.5363 -0.6343 2.8567 18 6 10.0141 -1.7825 3.4298 19 1 9.4557 -2.2655 4.2179 20 6 11.2163 -2.3256 2.9977 21 7 11.8967 -1.7373 2.0368 22 14 11.8678 -3.8923 3.7791 23 1 10.8866 -4.9893 3.5809 24 1 13.1583 -4.2624 3.1444 25 1 12.0759 -3.6710 5.2326 26 6 7.8017 0.9372 1.0056 27 6 3.4661 -1.2004 -0.0058 28 6 4.1856 -2.5244 -0.0128 29 7 2.1452 -1.1538 0.0005 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5137 32 1 -0.3632 0.8900 0.5139 33 1 3.9817 2.1493 0.0009 34 1 4.7348 1.7214 1.8847 35 1 5.8908 2.8930 1.1795 36 1 6.3634 3.5874 4.2490 37 1 6.8172 3.9975 2.5665 38 1 8.5887 2.8231 4.7790 39 1 8.9244 4.2242 3.7089 40 1 9.2380 2.8165 1.7801 41 1 9.9774 1.8267 3.0772 42 1 8.3401 0.1838 4.3727 43 1 7.4665 -0.7838 3.1608 44 1 10.0377 -0.2007 2.1485 45 1 12.7365 -2.1170 1.7347 46 1 8.2786 -0.0050 0.7356 47 1 8.2225 1.7560 0.4220 48 1 4.4477 -2.8009 1.0085 49 1 3.5366 -3.2884 -0.4408 50 1 5.0930 -2.4418 -0.6110 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112547838.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:04:34 Heat of formation + Delta-G solvation = 5.421259 kcal Electronic energy + Delta-G solvation = -31159.622100 eV Core-core repulsion = 27186.040544 eV Total energy + Delta-G solvation = -3973.581556 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.57758 -41.51068 -39.75575 -36.59021 -35.92859 -35.50737 -34.59143 -33.44232 -31.18074 -30.82637 -30.26475 -29.45147 -27.28864 -26.62989 -25.56838 -24.78907 -23.81691 -23.23479 -21.46671 -20.75749 -19.89131 -19.30153 -19.11594 -18.03243 -17.35391 -17.11485 -16.68826 -16.64602 -16.49457 -16.27148 -15.53041 -15.33582 -15.17189 -14.84052 -14.58293 -14.45941 -14.40432 -14.17992 -14.10134 -13.60111 -13.42004 -13.33020 -13.27473 -13.14011 -13.09996 -12.88760 -12.81116 -12.67901 -12.25566 -12.16059 -11.90605 -11.79817 -11.76386 -11.67737 -11.48893 -11.38998 -11.36286 -10.98990 -10.88125 -10.54126 -10.48221 -9.85185 -9.00459 -7.96745 -5.24751 -0.65200 -0.17643 1.42368 1.43407 1.46749 1.52648 1.76084 2.48892 2.53427 2.75646 2.86928 3.17347 3.20453 3.35583 3.39941 3.55641 3.66004 3.76438 4.04332 4.13694 4.14981 4.19249 4.27025 4.31810 4.42503 4.44128 4.45722 4.54058 4.56461 4.63004 4.70605 4.73484 4.78142 4.84449 4.86814 4.89314 4.94496 5.01219 5.06154 5.08430 5.20642 5.24997 5.30813 5.31497 5.40699 5.45496 5.50126 5.58249 5.71880 6.25289 6.39035 6.85169 6.90275 7.32141 8.07813 8.31929 9.26379 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.011229 B = 0.003386 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2492.949897 B = 8266.781375 C = 9970.401177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.327 3.673 3 N -0.527 5.527 4 C 0.198 3.802 5 C -0.255 4.255 6 C 0.585 3.415 7 O -0.570 6.570 8 N -0.609 5.609 9 C 0.098 3.902 10 C -0.092 4.092 11 H 0.086 0.914 12 C -0.102 4.102 13 C -0.116 4.116 14 C -0.113 4.113 15 C -0.069 4.069 16 C 0.178 3.822 17 N -0.737 5.737 18 C -0.247 4.247 19 H 0.069 0.931 20 C -0.072 4.072 21 N -0.966 5.966 22 Si 0.970 3.030 23 H -0.282 1.282 24 H -0.293 1.293 25 H -0.275 1.275 26 C 0.119 3.881 27 C 0.224 3.776 28 C -0.124 4.124 29 N -0.534 5.534 30 H 0.104 0.896 31 H 0.096 0.904 32 H 0.104 0.896 33 H 0.203 0.797 34 H 0.089 0.911 35 H 0.116 0.884 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.055 0.945 39 H 0.084 0.916 40 H 0.079 0.921 41 H 0.044 0.956 42 H 0.023 0.977 43 H -0.002 1.002 44 H 0.376 0.624 45 H 0.251 0.749 46 H 0.045 0.955 47 H 0.091 0.909 48 H 0.087 0.913 49 H 0.098 0.902 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.547 14.227 -0.810 26.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.062 3.938 3 N -0.242 5.242 4 C 0.031 3.969 5 C -0.262 4.262 6 C 0.373 3.627 7 O -0.450 6.450 8 N -0.341 5.341 9 C -0.023 4.023 10 C -0.112 4.112 11 H 0.104 0.896 12 C -0.140 4.140 13 C -0.154 4.154 14 C -0.151 4.151 15 C -0.070 4.070 16 C 0.051 3.949 17 N -0.380 5.380 18 C -0.379 4.379 19 H 0.087 0.913 20 C -0.264 4.264 21 N -0.616 5.616 22 Si 0.799 3.201 23 H -0.209 1.209 24 H -0.220 1.220 25 H -0.201 1.201 26 C -0.003 4.003 27 C 0.078 3.922 28 C -0.181 4.181 29 N -0.250 5.250 30 H 0.122 0.878 31 H 0.114 0.886 32 H 0.123 0.877 33 H 0.220 0.780 34 H 0.108 0.892 35 H 0.134 0.866 36 H 0.105 0.895 37 H 0.113 0.887 38 H 0.074 0.926 39 H 0.103 0.897 40 H 0.098 0.902 41 H 0.063 0.937 42 H 0.041 0.959 43 H 0.015 0.985 44 H 0.209 0.791 45 H 0.060 0.940 46 H 0.064 0.936 47 H 0.109 0.891 48 H 0.105 0.895 49 H 0.117 0.883 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -23.312 13.605 -1.135 27.015 hybrid contribution 2.264 -1.471 -0.032 2.700 sum -21.048 12.134 -1.167 24.323 Atomic orbital electron populations 1.20798 0.82466 1.05626 1.05384 1.24326 1.00145 0.82920 0.86384 1.68450 1.09326 1.29918 1.16514 1.23929 0.89477 0.97749 0.85707 1.21372 0.94487 0.97558 1.12798 1.17678 0.86315 0.79366 0.79305 1.90772 1.70190 1.41474 1.42519 1.48968 1.08331 1.33781 1.42993 1.23151 0.98564 0.90944 0.89611 1.22737 0.93341 0.98226 0.96919 0.89565 1.22427 0.95472 0.93471 1.02581 1.22459 0.96123 0.99150 0.97663 1.22432 0.96779 0.95401 1.00439 1.22129 0.96807 0.95088 0.92984 1.20562 0.86799 0.91915 0.95618 1.42492 1.22628 1.28499 1.44376 1.19526 1.02648 1.01453 1.14273 0.91257 1.25515 0.98362 1.02563 0.99978 1.69794 1.16708 1.42654 1.32493 0.85262 0.77086 0.79716 0.78010 1.20882 1.21959 1.20110 1.22528 0.80091 1.01790 0.95914 1.21960 0.89440 0.95612 0.85229 1.21055 1.00880 0.91843 1.04284 1.68325 1.08444 1.31050 1.17144 0.87773 0.88579 0.87705 0.78039 0.89248 0.86627 0.89522 0.88747 0.92571 0.89704 0.90228 0.93674 0.95885 0.98455 0.79113 0.93984 0.93596 0.89069 0.89495 0.88279 0.89489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 10.31 71.24 0.73 -0.24 16 2 C 0.33 6.68 7.64 138.71 1.06 7.74 16 3 N -0.53 -10.59 10.31 -186.79 -1.93 -12.52 16 4 C 0.20 3.93 9.12 85.07 0.78 4.70 16 5 C -0.25 -6.68 5.44 -19.91 -0.11 -6.79 16 6 C 0.59 18.72 7.19 86.78 0.62 19.34 16 7 O -0.57 -23.47 14.92 -3.88 -0.06 -23.53 16 8 N -0.61 -16.81 3.31 -811.74 -2.69 -19.50 16 9 C 0.10 1.71 5.10 86.52 0.44 2.15 16 10 C -0.09 -1.87 3.54 -9.29 -0.03 -1.91 16 11 H 0.09 1.83 7.92 -2.38 -0.02 1.82 16 12 C -0.10 -1.44 6.36 31.62 0.20 -1.24 16 13 C -0.12 -2.29 6.90 31.85 0.22 -2.07 16 14 C -0.11 -3.09 5.69 31.62 0.18 -2.91 16 15 C -0.07 -2.05 0.62 -50.68 -0.03 -2.08 16 16 C 0.18 7.24 5.24 86.38 0.45 7.70 16 17 N -0.74 -38.16 4.63 -343.46 -1.59 -39.75 16 18 C -0.25 -14.26 9.99 84.03 0.84 -13.42 16 19 H 0.07 3.88 7.83 -2.91 -0.02 3.86 16 20 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 21 N -0.97 -60.40 13.06 21.65 0.28 -60.12 16 22 Si 0.97 47.55 29.55 68.60 2.03 49.58 16 23 H -0.28 -13.53 7.11 99.48 0.71 -12.83 16 24 H -0.29 -14.40 7.11 99.48 0.71 -13.69 16 25 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 26 C 0.12 3.85 5.94 86.52 0.51 4.37 16 27 C 0.22 6.13 6.86 42.92 0.29 6.42 16 28 C -0.12 -3.41 9.72 71.23 0.69 -2.72 16 29 N -0.53 -13.19 10.26 -175.03 -1.80 -14.99 16 30 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 31 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.20 2.61 6.73 -2.91 -0.02 2.59 16 34 H 0.09 1.32 6.05 -2.39 -0.01 1.31 16 35 H 0.12 1.24 7.19 -2.39 -0.02 1.23 16 36 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.09 0.92 7.18 -2.39 -0.02 0.90 16 38 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 40 H 0.08 1.92 7.18 -2.38 -0.02 1.91 16 41 H 0.04 1.61 7.16 -2.39 -0.02 1.59 16 42 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 44 H 0.38 20.56 6.68 -92.71 -0.62 19.94 16 45 H 0.25 15.27 8.31 -92.71 -0.77 14.50 16 46 H 0.05 2.00 7.06 -2.38 -0.02 1.98 16 47 H 0.09 2.57 7.19 -2.39 -0.02 2.55 16 48 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 49 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 50 H 0.09 2.86 5.67 -2.39 -0.01 2.85 16 Total: -1.00 -77.44 392.08 1.92 -75.52 By element: Atomic # 1 Polarization: 29.68 SS G_CDS: 0.34 Total: 30.02 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: 7.32 Total: 15.29 kcal Atomic # 7 Polarization: -139.15 SS G_CDS: -7.72 Total: -146.87 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -0.06 Total: -23.53 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.58 kcal Total: -77.44 1.92 -75.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112547838.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.938 kcal (2) G-P(sol) polarization free energy of solvation -77.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds