Wall clock time and date at job start Wed Apr 1 2020 04:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32141 * 119.90003 * 2 1 4 4 C 1.32081 * 120.06868 * 180.02562 * 3 2 1 5 5 C 1.50707 * 120.06402 * 180.02562 * 4 3 2 6 6 C 1.39438 * 119.87511 * 359.97438 * 4 3 2 7 7 C 1.48159 * 120.09701 * 180.02562 * 6 4 3 8 8 O 1.21509 * 119.99704 * 353.90172 * 7 6 4 9 9 N 1.34773 * 119.99901 * 173.90511 * 7 6 4 10 10 C 1.46499 * 120.00282 * 179.72110 * 9 7 6 11 11 C 1.52998 * 109.47565 * 180.27714 * 10 9 7 12 12 C 1.50703 * 109.46998 * 180.02562 * 11 10 9 13 13 C 1.29452 * 117.69549 * 95.00005 * 12 11 10 14 14 C 1.50317 * 123.65010 * 180.85870 * 13 12 11 15 15 N 1.47002 * 109.16937 * 349.01803 * 14 13 12 16 16 C 1.36940 * 121.37778 * 222.97424 * 15 14 13 17 17 H 1.07998 * 119.99507 * 156.54092 * 16 15 14 18 18 C 1.38808 * 120.00037 * 336.53418 * 16 15 14 19 19 N 1.31623 * 120.00034 * 355.16992 * 18 16 15 20 20 Si 1.86795 * 120.00075 * 175.16304 * 18 16 15 21 21 H 1.48503 * 109.47288 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47311 * 120.00422 * 20 18 16 23 23 H 1.48499 * 109.47088 * 240.00427 * 20 18 16 24 24 C 1.47344 * 117.24548 * 42.95054 * 15 14 13 25 25 C 1.49974 * 117.69098 * 274.73850 * 12 11 10 26 26 N 1.33005 * 119.80760 * 0.27697 * 6 4 3 27 27 C 1.31802 * 119.91965 * 359.45018 * 26 6 4 28 28 C 1.50707 * 119.93197 * 180.27692 * 27 26 6 29 29 H 1.08993 * 109.46960 * 90.00612 * 1 2 3 30 30 H 1.09001 * 109.47038 * 210.00495 * 1 2 3 31 31 H 1.08996 * 109.46945 * 330.00117 * 1 2 3 32 32 H 1.08997 * 109.47142 * 263.03645 * 5 4 3 33 33 H 1.09007 * 109.46416 * 23.03385 * 5 4 3 34 34 H 1.08999 * 109.47407 * 143.03316 * 5 4 3 35 35 H 0.97008 * 119.99885 * 359.97438 * 9 7 6 36 36 H 1.09005 * 109.46803 * 300.28042 * 10 9 7 37 37 H 1.09004 * 109.46529 * 60.27244 * 10 9 7 38 38 H 1.08993 * 109.46711 * 299.99976 * 11 10 9 39 39 H 1.08995 * 109.47008 * 60.00285 * 11 10 9 40 40 H 1.08005 * 118.17062 * 0.87830 * 13 12 11 41 41 H 1.08998 * 109.52350 * 108.93162 * 14 13 12 42 42 H 1.09001 * 109.51667 * 229.11541 * 14 13 12 43 43 H 0.96999 * 120.00171 * 179.97438 * 19 18 16 44 44 H 1.09000 * 109.77989 * 57.81251 * 24 15 14 45 45 H 1.08999 * 109.77533 * 178.61813 * 24 15 14 46 46 H 1.09004 * 109.31252 * 281.28853 * 25 12 11 47 47 H 1.08993 * 109.31583 * 40.72114 * 25 12 11 48 48 H 1.08998 * 109.46792 * 270.27832 * 28 27 26 49 49 H 1.08998 * 109.47087 * 30.27351 * 28 27 26 50 50 H 1.08997 * 109.47260 * 150.27496 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1657 1.1455 0.0000 4 6 3.4865 1.1494 -0.0005 5 6 4.2377 2.4560 0.0001 6 6 4.1847 -0.0576 -0.0005 7 6 5.6662 -0.0590 -0.0005 8 8 6.2747 0.9868 -0.1123 9 7 6.3390 -1.2202 0.1234 10 6 7.8040 -1.2223 0.1173 11 6 8.3126 -2.6577 0.2649 12 6 9.8196 -2.6597 0.2592 13 6 10.4257 -2.6415 1.4029 14 6 11.9212 -2.6221 1.5530 15 7 12.5408 -2.8917 0.2475 16 6 13.6113 -3.7372 0.1272 17 1 13.8157 -4.2184 -0.8178 18 6 14.4335 -3.9757 1.2199 19 7 14.2421 -3.3176 2.3436 20 14 15.8115 -5.2307 1.0955 21 1 15.8157 -5.8282 -0.2640 22 1 17.1137 -4.5624 1.3461 23 1 15.6008 -6.2988 2.1054 24 6 11.9622 -2.2149 -0.9265 25 6 10.5115 -2.6886 -1.0711 26 7 3.5167 -1.2077 -0.0056 27 6 2.1987 -1.2025 0.0004 28 6 1.4415 -2.5056 0.0010 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 4.5264 2.7095 -1.0199 33 1 3.5989 3.2420 0.4030 34 1 5.1309 2.3613 0.6176 35 1 5.8532 -2.0551 0.2130 36 1 8.1640 -0.8041 -0.8228 37 1 8.1716 -0.6193 0.9476 38 1 7.9527 -3.0758 1.2048 39 1 7.9450 -3.2606 -0.5655 40 1 9.8231 -2.6405 2.2993 41 1 12.2386 -1.6430 1.9117 42 1 12.2256 -3.3885 2.2658 43 1 14.8164 -3.4845 3.1073 44 1 11.9887 -1.1351 -0.7800 45 1 12.5263 -2.4805 -1.8205 46 1 10.4979 -3.7059 -1.4625 47 1 9.9870 -2.0315 -1.7647 48 1 1.2587 -2.8199 -1.0265 49 1 2.0287 -3.2667 0.5147 50 1 0.4897 -2.3725 0.5151 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160648610.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:05 Heat of formation + Delta-G solvation = 42.507875 kcal Electronic energy + Delta-G solvation = -29073.591813 eV Core-core repulsion = 25101.618454 eV Total energy + Delta-G solvation = -3971.973360 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.88154 -39.62526 -37.87703 -35.82382 -35.18449 -34.72755 -33.54538 -31.41784 -30.57025 -29.86816 -29.47932 -28.57575 -26.65900 -25.25330 -24.03684 -23.18119 -22.59673 -22.08409 -21.04981 -20.71355 -18.74177 -17.71965 -17.57430 -16.34016 -16.21684 -15.61019 -15.58817 -15.35498 -15.00637 -14.70029 -14.21182 -14.00986 -13.90972 -13.73689 -13.55223 -13.54980 -13.33511 -13.21973 -13.09482 -12.68405 -12.56740 -12.53504 -12.31375 -12.17086 -12.00058 -11.89343 -11.58434 -11.39339 -11.19998 -10.97258 -10.84057 -10.75593 -10.33783 -10.25295 -10.11075 -9.82199 -9.55363 -9.42082 -9.41218 -9.06462 -8.69243 -7.85171 -6.70252 -5.73363 -3.16925 -0.00556 0.60037 2.42272 2.73447 3.06479 3.30989 3.38605 3.45304 3.47366 3.49654 3.52952 3.91222 4.18476 4.46280 4.50268 4.61458 4.76306 4.88039 4.98053 5.08840 5.13841 5.18352 5.21935 5.31330 5.35534 5.42370 5.45470 5.46859 5.58337 5.58911 5.67891 5.78896 5.81737 6.01883 6.04067 6.12081 6.19257 6.25601 6.34644 6.43072 6.60037 6.73808 6.82846 6.93800 7.17602 7.31436 7.39303 7.44862 7.49804 7.75441 7.95245 7.98838 8.44644 9.25048 9.86118 10.43377 11.34010 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.026385 B = 0.001757 C = 0.001703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.944732 B =15933.820831 C =16436.686991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.108 3.892 3 N -0.444 5.444 4 C 0.140 3.860 5 C -0.106 4.106 6 C 0.023 3.977 7 C 0.572 3.428 8 O -0.522 6.522 9 N -0.707 5.707 10 C 0.123 3.877 11 C -0.091 4.091 12 C -0.147 4.147 13 C -0.144 4.144 14 C 0.189 3.811 15 N -0.598 5.598 16 C -0.237 4.237 17 H 0.070 0.930 18 C -0.006 4.006 19 N -0.916 5.916 20 Si 0.909 3.091 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.143 3.857 25 C -0.091 4.091 26 N -0.407 5.407 27 C 0.068 3.932 28 C -0.103 4.103 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.072 0.928 34 H 0.108 0.892 35 H 0.408 0.592 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.090 0.910 41 H 0.035 0.965 42 H 0.109 0.891 43 H 0.253 0.747 44 H 0.025 0.975 45 H 0.055 0.945 46 H 0.061 0.939 47 H 0.052 0.948 48 H 0.084 0.916 49 H 0.082 0.918 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.623 4.767 -4.204 30.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.035 4.035 3 N -0.159 5.159 4 C 0.000 4.000 5 C -0.163 4.163 6 C -0.119 4.119 7 C 0.356 3.644 8 O -0.398 6.398 9 N -0.358 5.358 10 C 0.000 4.000 11 C -0.129 4.129 12 C -0.148 4.148 13 C -0.164 4.164 14 C 0.064 3.936 15 N -0.321 5.321 16 C -0.367 4.367 17 H 0.088 0.912 18 C -0.203 4.203 19 N -0.563 5.563 20 Si 0.739 3.261 21 H -0.204 1.204 22 H -0.217 1.217 23 H -0.217 1.217 24 C 0.016 3.984 25 C -0.130 4.130 26 N -0.124 5.124 27 C -0.076 4.076 28 C -0.160 4.160 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.126 0.874 35 H 0.244 0.756 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.108 0.892 41 H 0.052 0.948 42 H 0.127 0.873 43 H 0.063 0.937 44 H 0.043 0.957 45 H 0.074 0.926 46 H 0.080 0.920 47 H 0.070 0.930 48 H 0.103 0.897 49 H 0.101 0.899 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -28.964 5.495 -4.150 29.771 hybrid contribution 0.362 -1.114 0.070 1.174 sum -28.602 4.381 -4.080 29.222 Atomic orbital electron populations 1.20857 0.87320 1.04398 1.03902 1.22445 0.98650 0.88902 0.93485 1.68335 1.07850 1.28817 1.10906 1.22383 0.89719 0.96735 0.91122 1.21068 1.00015 0.90515 1.04749 1.21984 0.95770 0.90217 1.03901 1.17572 0.84859 0.84403 0.77546 1.90771 1.68466 1.30867 1.49719 1.45965 1.08153 1.09232 1.72420 1.21551 0.77204 0.98228 1.02995 1.20900 0.95158 0.94661 1.02169 1.20198 0.92185 1.06520 0.95892 1.23209 1.00192 0.97043 0.95938 1.19969 0.83792 1.00751 0.89051 1.44168 1.34490 1.51513 1.01971 1.19300 1.01941 1.17954 0.97493 0.91247 1.25040 0.98331 0.99863 0.97047 1.69928 1.40139 1.43368 1.02837 0.86097 0.81986 0.80592 0.77396 1.20403 1.21698 1.21727 1.20992 0.91263 0.94736 0.91406 1.20782 0.97899 1.00601 0.93675 1.68134 1.08665 1.28603 1.07020 1.22114 0.90007 0.97000 0.98498 1.20784 0.99342 0.92119 1.03766 0.89423 0.89500 0.89820 0.89370 0.90921 0.87387 0.75616 0.90910 0.90896 0.91502 0.91441 0.89167 0.94777 0.87305 0.93685 0.95740 0.92638 0.92006 0.92981 0.89747 0.89868 0.89746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.46 9.78 36.01 0.35 -0.11 16 2 C 0.11 0.91 6.79 -82.28 -0.56 0.35 16 3 N -0.44 -4.76 10.34 -5.23 -0.05 -4.82 16 4 C 0.14 1.62 6.82 -82.03 -0.56 1.06 16 5 C -0.11 -1.10 8.86 36.01 0.32 -0.78 16 6 C 0.02 0.27 6.75 -82.84 -0.56 -0.29 16 7 C 0.57 7.54 7.75 -12.19 -0.09 7.45 16 8 O -0.52 -7.92 13.35 5.36 0.07 -7.85 16 9 N -0.71 -8.46 5.54 -61.15 -0.34 -8.79 16 10 C 0.12 1.62 5.66 -4.04 -0.02 1.60 16 11 C -0.09 -1.22 5.32 -27.88 -0.15 -1.37 16 12 C -0.15 -2.58 5.11 -100.99 -0.52 -3.09 16 13 C -0.14 -2.84 9.47 -35.78 -0.34 -3.18 16 14 C 0.19 4.62 5.26 -5.11 -0.03 4.59 16 15 N -0.60 -15.26 3.02 -173.57 -0.52 -15.78 16 16 C -0.24 -6.56 9.76 -15.06 -0.15 -6.71 16 17 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 18 C -0.01 -0.17 5.25 -17.43 -0.09 -0.27 16 19 N -0.92 -26.51 10.44 55.49 0.58 -25.93 16 20 Si 0.91 21.88 29.56 -169.99 -5.02 16.85 16 21 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 C 0.14 3.03 6.59 -3.43 -0.02 3.01 16 25 C -0.09 -1.62 5.95 -28.08 -0.17 -1.79 16 26 N -0.41 -4.35 9.65 -5.88 -0.06 -4.41 16 27 C 0.07 0.57 6.79 -82.42 -0.56 0.01 16 28 C -0.10 -0.47 9.78 36.01 0.35 -0.12 16 29 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.09 0.18 5.94 -51.93 -0.31 -0.13 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.11 1.24 5.87 -51.93 -0.30 0.94 16 35 H 0.41 4.24 7.84 -40.82 -0.32 3.92 16 36 H 0.07 1.02 8.11 -51.93 -0.42 0.60 16 37 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.07 0.85 7.78 -51.93 -0.40 0.44 16 39 H 0.07 0.83 8.11 -51.93 -0.42 0.41 16 40 H 0.09 1.59 7.73 -52.48 -0.41 1.18 16 41 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.11 2.96 5.99 -51.93 -0.31 2.65 16 43 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.06 1.14 7.96 -51.93 -0.41 0.72 16 46 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.05 0.81 8.10 -51.93 -0.42 0.39 16 48 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 49 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.08 0.19 5.94 -51.93 -0.31 -0.11 16 LS Contribution 401.86 15.07 6.06 6.06 Total: -1.00 -32.33 401.86 -9.89 -42.22 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: -7.81 Total: 2.08 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: -2.79 Total: 0.37 kcal Atomic # 7 Polarization: -59.34 SS G_CDS: -0.39 Total: -59.74 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: 0.07 Total: -7.85 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.33 -9.89 -42.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160648610.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.728 kcal (2) G-P(sol) polarization free energy of solvation -32.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds