Wall clock time and date at job start Wed Apr 1 2020 04:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.32141 * 119.90003 * 2 1 4 4 C 1.32081 * 120.06868 * 180.02562 * 3 2 1 5 5 C 1.50707 * 120.06402 * 180.02562 * 4 3 2 6 6 C 1.39438 * 119.87511 * 359.97438 * 4 3 2 7 7 C 1.48159 * 120.09701 * 180.02562 * 6 4 3 8 8 O 1.21509 * 119.99704 * 353.90172 * 7 6 4 9 9 N 1.34773 * 119.99901 * 173.90511 * 7 6 4 10 10 C 1.46499 * 120.00282 * 179.72110 * 9 7 6 11 11 C 1.52998 * 109.47565 * 180.27714 * 10 9 7 12 12 C 1.50703 * 109.46998 * 180.02562 * 11 10 9 13 13 C 1.29452 * 117.69549 * 95.00005 * 12 11 10 14 14 C 1.50317 * 123.65010 * 180.85870 * 13 12 11 15 15 N 1.47002 * 109.16937 * 349.01803 * 14 13 12 16 16 C 1.36940 * 121.37778 * 222.97424 * 15 14 13 17 17 H 1.07998 * 119.99507 * 156.54092 * 16 15 14 18 18 C 1.38808 * 120.00037 * 336.53418 * 16 15 14 19 19 N 1.31623 * 120.00034 * 355.16992 * 18 16 15 20 20 Si 1.86795 * 120.00075 * 175.16304 * 18 16 15 21 21 H 1.48503 * 109.47288 * 0.02562 * 20 18 16 22 22 H 1.48498 * 109.47311 * 120.00422 * 20 18 16 23 23 H 1.48499 * 109.47088 * 240.00427 * 20 18 16 24 24 C 1.47344 * 117.24548 * 42.95054 * 15 14 13 25 25 C 1.49974 * 117.69098 * 274.73850 * 12 11 10 26 26 N 1.33005 * 119.80760 * 0.27697 * 6 4 3 27 27 C 1.31802 * 119.91965 * 359.45018 * 26 6 4 28 28 C 1.50707 * 119.93197 * 180.27692 * 27 26 6 29 29 H 1.08993 * 109.46960 * 90.00612 * 1 2 3 30 30 H 1.09001 * 109.47038 * 210.00495 * 1 2 3 31 31 H 1.08996 * 109.46945 * 330.00117 * 1 2 3 32 32 H 1.08997 * 109.47142 * 263.03645 * 5 4 3 33 33 H 1.09007 * 109.46416 * 23.03385 * 5 4 3 34 34 H 1.08999 * 109.47407 * 143.03316 * 5 4 3 35 35 H 0.97008 * 119.99885 * 359.97438 * 9 7 6 36 36 H 1.09005 * 109.46803 * 300.28042 * 10 9 7 37 37 H 1.09004 * 109.46529 * 60.27244 * 10 9 7 38 38 H 1.08993 * 109.46711 * 299.99976 * 11 10 9 39 39 H 1.08995 * 109.47008 * 60.00285 * 11 10 9 40 40 H 1.08005 * 118.17062 * 0.87830 * 13 12 11 41 41 H 1.08998 * 109.52350 * 108.93162 * 14 13 12 42 42 H 1.09001 * 109.51667 * 229.11541 * 14 13 12 43 43 H 0.96999 * 120.00171 * 179.97438 * 19 18 16 44 44 H 1.09000 * 109.77989 * 57.81251 * 24 15 14 45 45 H 1.08999 * 109.77533 * 178.61813 * 24 15 14 46 46 H 1.09004 * 109.31252 * 281.28853 * 25 12 11 47 47 H 1.08993 * 109.31583 * 40.72114 * 25 12 11 48 48 H 1.08998 * 109.46792 * 270.27832 * 28 27 26 49 49 H 1.08998 * 109.47087 * 30.27351 * 28 27 26 50 50 H 1.08997 * 109.47260 * 150.27496 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1657 1.1455 0.0000 4 6 3.4865 1.1494 -0.0005 5 6 4.2377 2.4560 0.0001 6 6 4.1847 -0.0576 -0.0005 7 6 5.6662 -0.0590 -0.0005 8 8 6.2747 0.9868 -0.1123 9 7 6.3390 -1.2202 0.1234 10 6 7.8040 -1.2223 0.1173 11 6 8.3126 -2.6577 0.2649 12 6 9.8196 -2.6597 0.2592 13 6 10.4257 -2.6415 1.4029 14 6 11.9212 -2.6221 1.5530 15 7 12.5408 -2.8917 0.2475 16 6 13.6113 -3.7372 0.1272 17 1 13.8157 -4.2184 -0.8178 18 6 14.4335 -3.9757 1.2199 19 7 14.2421 -3.3176 2.3436 20 14 15.8115 -5.2307 1.0955 21 1 15.8157 -5.8282 -0.2640 22 1 17.1137 -4.5624 1.3461 23 1 15.6008 -6.2988 2.1054 24 6 11.9622 -2.2149 -0.9265 25 6 10.5115 -2.6886 -1.0711 26 7 3.5167 -1.2077 -0.0056 27 6 2.1987 -1.2025 0.0004 28 6 1.4415 -2.5056 0.0010 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 4.5264 2.7095 -1.0199 33 1 3.5989 3.2420 0.4030 34 1 5.1309 2.3613 0.6176 35 1 5.8532 -2.0551 0.2130 36 1 8.1640 -0.8041 -0.8228 37 1 8.1716 -0.6193 0.9476 38 1 7.9527 -3.0758 1.2048 39 1 7.9450 -3.2606 -0.5655 40 1 9.8231 -2.6405 2.2993 41 1 12.2386 -1.6430 1.9117 42 1 12.2256 -3.3885 2.2658 43 1 14.8164 -3.4845 3.1073 44 1 11.9887 -1.1351 -0.7800 45 1 12.5263 -2.4805 -1.8205 46 1 10.4979 -3.7059 -1.4625 47 1 9.9870 -2.0315 -1.7647 48 1 1.2587 -2.8199 -1.0265 49 1 2.0287 -3.2667 0.5147 50 1 0.4897 -2.3725 0.5151 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160648610.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:03:04 Heat of formation + Delta-G solvation = 21.700714 kcal Electronic energy + Delta-G solvation = -29074.494079 eV Core-core repulsion = 25101.618454 eV Total energy + Delta-G solvation = -3972.875626 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.62066 -40.61034 -39.45232 -36.95997 -36.11745 -35.39152 -35.08111 -33.16007 -31.47834 -31.21666 -30.53908 -29.61829 -27.64197 -26.76193 -24.85264 -24.51199 -24.05496 -23.06400 -22.43365 -21.81283 -19.56843 -19.43004 -18.55669 -17.64844 -17.21260 -17.00850 -16.81082 -16.25965 -16.22497 -15.79170 -15.52815 -15.41423 -15.13427 -14.96805 -14.55392 -14.43429 -14.26266 -13.97546 -13.83495 -13.76838 -13.71636 -13.43900 -13.34220 -13.23119 -13.14919 -12.86177 -12.84160 -12.73871 -12.61096 -12.48689 -12.35710 -12.12040 -11.89603 -11.83150 -11.69121 -11.30829 -11.12360 -10.73572 -10.30553 -10.22650 -9.89720 -9.46449 -8.73899 -7.83464 -5.30642 -0.76241 -0.12102 1.41272 1.46977 1.47426 1.53158 1.58193 1.94276 2.50677 2.52573 2.78291 2.88240 3.21573 3.31591 3.53549 3.68715 3.79089 3.94538 3.96306 4.09525 4.11581 4.14780 4.28814 4.54304 4.56646 4.57524 4.63822 4.67865 4.68480 4.75084 4.78719 4.86305 4.87264 4.91162 4.96734 4.97483 5.03289 5.08443 5.18848 5.20031 5.26163 5.36357 5.46583 5.47486 5.57330 5.63576 5.89347 6.01735 6.29161 6.33200 6.38554 6.60011 6.99855 7.15502 7.84697 8.37963 9.21935 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.026385 B = 0.001757 C = 0.001703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.944732 B =15933.820831 C =16436.686991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.110 3.890 3 N -0.462 5.462 4 C 0.124 3.876 5 C -0.100 4.100 6 C 0.000 4.000 7 C 0.570 3.430 8 O -0.550 6.550 9 N -0.698 5.698 10 C 0.132 3.868 11 C -0.079 4.079 12 C -0.123 4.123 13 C -0.172 4.172 14 C 0.199 3.801 15 N -0.618 5.618 16 C -0.251 4.251 17 H 0.074 0.926 18 C -0.062 4.062 19 N -0.945 5.945 20 Si 0.975 3.025 21 H -0.265 1.265 22 H -0.293 1.293 23 H -0.291 1.291 24 C 0.135 3.865 25 C -0.087 4.087 26 N -0.418 5.418 27 C 0.066 3.934 28 C -0.101 4.101 29 H 0.104 0.896 30 H 0.116 0.884 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.418 0.582 36 H 0.067 0.933 37 H 0.058 0.942 38 H 0.080 0.920 39 H 0.090 0.910 40 H 0.110 0.890 41 H 0.000 1.000 42 H 0.074 0.926 43 H 0.248 0.752 44 H 0.020 0.980 45 H 0.060 0.940 46 H 0.067 0.933 47 H 0.085 0.915 48 H 0.099 0.901 49 H 0.081 0.919 50 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.039 3.204 -5.573 33.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.034 4.034 3 N -0.178 5.178 4 C -0.014 4.014 5 C -0.157 4.157 6 C -0.140 4.140 7 C 0.355 3.645 8 O -0.428 6.428 9 N -0.349 5.349 10 C 0.009 3.991 11 C -0.116 4.116 12 C -0.124 4.124 13 C -0.191 4.191 14 C 0.074 3.926 15 N -0.342 5.342 16 C -0.381 4.381 17 H 0.091 0.909 18 C -0.255 4.255 19 N -0.593 5.593 20 Si 0.804 3.196 21 H -0.190 1.190 22 H -0.220 1.220 23 H -0.218 1.218 24 C 0.010 3.990 25 C -0.126 4.126 26 N -0.135 5.135 27 C -0.079 4.079 28 C -0.158 4.158 29 H 0.123 0.877 30 H 0.134 0.866 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.111 0.889 35 H 0.255 0.745 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.099 0.901 39 H 0.109 0.891 40 H 0.128 0.872 41 H 0.017 0.983 42 H 0.092 0.908 43 H 0.058 0.942 44 H 0.039 0.961 45 H 0.078 0.922 46 H 0.085 0.915 47 H 0.104 0.896 48 H 0.117 0.883 49 H 0.100 0.900 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -32.386 3.934 -5.544 33.092 hybrid contribution 1.264 -0.616 0.420 1.467 sum -31.123 3.318 -5.124 31.716 Atomic orbital electron populations 1.21053 0.84147 1.05826 1.05302 1.23213 1.00630 0.88268 0.91254 1.68391 1.07407 1.30182 1.11782 1.22465 0.90369 0.96818 0.91794 1.20957 0.99554 0.90848 1.04342 1.21746 0.95020 0.91007 1.06191 1.17813 0.85598 0.84139 0.76926 1.90755 1.69256 1.31804 1.51014 1.45796 1.07513 1.09470 1.72094 1.21311 0.77998 0.97678 1.02124 1.20788 0.91731 0.95116 1.03985 1.20522 0.94655 1.02408 0.94832 1.22902 0.97328 1.00951 0.97966 1.19583 0.87081 0.97767 0.88186 1.44446 1.34594 1.51812 1.03336 1.19649 1.02547 1.18262 0.97621 0.90871 1.25850 1.00803 1.02035 0.96841 1.70148 1.40937 1.44895 1.03340 0.85064 0.78675 0.78122 0.77774 1.18974 1.21998 1.21755 1.21191 0.93443 0.94302 0.90074 1.20748 0.95687 1.01477 0.94648 1.68138 1.09888 1.27949 1.07542 1.22848 0.89443 0.98781 0.96803 1.20961 0.99958 0.89825 1.05065 0.87743 0.86600 0.89870 0.89576 0.89827 0.88949 0.74505 0.91464 0.92402 0.90115 0.89138 0.87197 0.98260 0.90803 0.94213 0.96143 0.92185 0.91458 0.89643 0.88270 0.89977 0.86884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.53 9.78 71.24 0.70 0.17 16 2 C 0.11 1.59 6.79 42.63 0.29 1.88 16 3 N -0.46 -9.44 10.34 -170.47 -1.76 -11.20 16 4 C 0.12 2.86 6.82 42.81 0.29 3.15 16 5 C -0.10 -2.13 8.86 71.24 0.63 -1.50 16 6 C 0.00 -0.01 6.75 41.89 0.28 0.27 16 7 C 0.57 14.97 7.75 86.88 0.67 15.64 16 8 O -0.55 -17.09 13.35 -3.74 -0.05 -17.14 16 9 N -0.70 -15.80 5.54 -465.67 -2.58 -18.38 16 10 C 0.13 3.29 5.66 86.38 0.49 3.78 16 11 C -0.08 -1.89 5.32 29.85 0.16 -1.73 16 12 C -0.12 -4.12 5.11 -15.13 -0.08 -4.20 16 13 C -0.17 -6.81 9.47 27.11 0.26 -6.55 16 14 C 0.20 10.17 5.26 85.42 0.45 10.62 16 15 N -0.62 -32.25 3.02 -703.04 -2.12 -34.37 16 16 C -0.25 -14.11 9.76 84.03 0.82 -13.29 16 17 H 0.07 3.96 7.83 -2.91 -0.02 3.93 16 18 C -0.06 -3.52 5.25 84.86 0.45 -3.08 16 19 N -0.95 -56.95 10.44 21.65 0.23 -56.72 16 20 Si 0.98 45.73 29.56 68.60 2.03 47.75 16 21 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 22 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 23 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 24 C 0.14 5.73 6.59 86.31 0.57 6.30 16 25 C -0.09 -2.94 5.95 29.72 0.18 -2.76 16 26 N -0.42 -8.31 9.65 -172.52 -1.67 -9.98 16 27 C 0.07 0.96 6.79 42.68 0.29 1.25 16 28 C -0.10 -0.54 9.78 71.24 0.70 0.15 16 29 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 30 H 0.12 -0.09 5.94 -2.39 -0.01 -0.10 16 31 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.08 1.51 8.14 -2.38 -0.02 1.49 16 34 H 0.09 2.26 5.87 -2.39 -0.01 2.25 16 35 H 0.42 7.85 7.84 -92.70 -0.73 7.12 16 36 H 0.07 1.77 8.11 -2.38 -0.02 1.75 16 37 H 0.06 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.08 1.80 7.78 -2.39 -0.02 1.78 16 39 H 0.09 1.85 8.11 -2.39 -0.02 1.84 16 40 H 0.11 3.85 7.73 -2.91 -0.02 3.83 16 41 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 42 H 0.07 4.25 5.99 -2.39 -0.01 4.24 16 43 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 44 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.06 2.43 7.96 -2.39 -0.02 2.42 16 46 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 47 H 0.09 2.37 8.10 -2.39 -0.02 2.35 16 48 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 49 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 50 H 0.11 -0.05 5.94 -2.39 -0.01 -0.06 16 Total: -1.00 -73.79 401.86 1.44 -72.35 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 0.23 Total: 17.58 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: 7.14 Total: 10.11 kcal Atomic # 7 Polarization: -122.75 SS G_CDS: -7.91 Total: -130.66 kcal Atomic # 8 Polarization: -17.09 SS G_CDS: -0.05 Total: -17.14 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 2.03 Total: 47.75 kcal Total: -73.79 1.44 -72.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160648610.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.046 kcal (2) G-P(sol) polarization free energy of solvation -73.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds