Wall clock time and date at job start Wed Apr 1 2020 03:59:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35450 * 126.39116 * 2 1 4 4 N 1.33189 * 108.62105 * 180.02562 * 3 2 1 5 5 C 1.32644 * 109.12549 * 0.02562 * 4 3 2 6 6 C 1.40654 * 132.14823 * 180.31498 * 5 4 3 7 7 C 1.38442 * 119.08607 * 180.18837 * 6 5 4 8 8 C 1.47658 * 120.36670 * 179.73652 * 7 6 5 9 9 O 1.21583 * 120.00339 * 359.73090 * 8 7 6 10 10 N 1.34777 * 119.99657 * 179.45602 * 8 7 6 11 11 C 1.46499 * 120.00195 * 180.27903 * 10 8 7 12 12 H 1.08999 * 109.46621 * 324.99673 * 11 10 8 13 13 C 1.52998 * 109.47145 * 84.99285 * 11 10 8 14 14 C 1.52995 * 109.47290 * 204.99666 * 11 10 8 15 15 C 1.53001 * 109.47285 * 64.99571 * 14 11 10 16 16 C 1.52999 * 109.47616 * 179.97438 * 15 14 11 17 17 C 1.53001 * 109.47098 * 180.02562 * 16 15 14 18 18 N 1.46502 * 109.46496 * 180.02562 * 17 16 15 19 19 C 1.36945 * 119.99761 * 180.02562 * 18 17 16 20 20 H 1.07999 * 119.99487 * 359.97438 * 19 18 17 21 21 C 1.38808 * 120.00078 * 179.97438 * 19 18 17 22 22 N 1.31617 * 120.00148 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00126 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46806 * 59.99883 * 23 21 19 25 25 H 1.48498 * 109.47295 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47266 * 300.00261 * 23 21 19 27 27 C 1.41771 * 119.25506 * 359.47249 * 7 6 5 28 28 C 1.34539 * 120.15106 * 0.26414 * 27 7 6 29 29 N 1.36441 * 126.38901 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.47029 * 270.00263 * 1 2 3 31 31 H 1.09005 * 109.46866 * 29.99328 * 1 2 3 32 32 H 1.08997 * 109.47146 * 149.99483 * 1 2 3 33 33 H 1.08001 * 125.69088 * 0.02562 * 3 2 1 34 34 H 1.07995 * 120.45375 * 359.93680 * 6 5 4 35 35 H 0.97000 * 119.99736 * 0.27175 * 10 8 7 36 36 H 1.08995 * 109.47315 * 300.00483 * 13 11 10 37 37 H 1.08999 * 109.47045 * 60.00647 * 13 11 10 38 38 H 1.09007 * 109.46732 * 180.02562 * 13 11 10 39 39 H 1.09000 * 109.47218 * 184.99612 * 14 11 10 40 40 H 1.09000 * 109.47293 * 304.99778 * 14 11 10 41 41 H 1.09001 * 109.47549 * 300.00190 * 15 14 11 42 42 H 1.09005 * 109.47234 * 60.00003 * 15 14 11 43 43 H 1.09000 * 109.47132 * 300.00191 * 16 15 14 44 44 H 1.09000 * 109.47048 * 60.00155 * 16 15 14 45 45 H 1.08992 * 109.47246 * 299.99789 * 17 16 15 46 46 H 1.08991 * 109.47284 * 60.00685 * 17 16 15 47 47 H 0.96996 * 120.00607 * 359.97438 * 18 17 16 48 48 H 0.97002 * 120.00424 * 179.97438 * 22 21 19 49 49 H 1.08001 * 119.92467 * 180.25253 * 27 7 6 50 50 H 1.07996 * 119.51900 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3106 1.0904 0.0000 4 7 3.5790 0.6839 -0.0006 5 6 3.6103 -0.6422 -0.0015 6 6 4.6752 -1.5611 0.0034 7 6 4.3943 -2.9168 -0.0032 8 6 5.4904 -3.9062 -0.0042 9 8 6.6472 -3.5320 -0.0042 10 7 5.2084 -5.2241 0.0005 11 6 6.2958 -6.2058 0.0057 12 1 7.1303 -5.8267 -0.5842 13 6 6.7568 -6.4487 1.4442 14 6 5.7991 -7.5203 -0.5995 15 6 5.4552 -7.3048 -2.0747 16 6 4.9591 -8.6194 -2.6801 17 6 4.6159 -8.4040 -4.1555 18 7 4.1402 -9.6627 -4.7349 19 6 3.7724 -9.7138 -6.0531 20 1 3.8325 -8.8261 -6.6652 21 6 3.3222 -10.9065 -6.6022 22 7 3.2494 -11.9885 -5.8563 23 14 2.8197 -10.9761 -8.4001 24 1 3.9772 -10.6030 -9.2522 25 1 2.3803 -12.3537 -8.7383 26 1 1.7029 -10.0270 -8.6390 27 6 3.0426 -3.3442 -0.0033 28 6 2.0475 -2.4388 -0.0023 29 7 2.3165 -1.0984 -0.0005 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8901 -0.5138 32 1 -0.3633 -0.8899 -0.5139 33 1 1.9783 2.1180 0.0004 34 1 5.6978 -1.2139 0.0080 35 1 4.2855 -5.5226 0.0005 36 1 7.1106 -5.5122 1.8753 37 1 5.9223 -6.8278 2.0340 38 1 7.5662 -7.1788 1.4479 39 1 6.5791 -8.2769 -0.5150 40 1 4.9100 -7.8537 -0.0642 41 1 4.6751 -6.5482 -2.1593 42 1 6.3443 -6.9714 -2.6101 43 1 5.7395 -9.3757 -2.5957 44 1 4.0701 -8.9533 -2.1449 45 1 3.8357 -7.6477 -4.2404 46 1 5.5050 -8.0705 -4.6904 47 1 4.0866 -10.4601 -4.1852 48 1 2.9345 -12.8219 -6.2399 49 1 2.8111 -4.3992 -0.0042 50 1 1.0214 -2.7758 -0.0020 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170784989.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:34 Heat of formation + Delta-G solvation = 43.545562 kcal Electronic energy + Delta-G solvation = -28620.961809 eV Core-core repulsion = 24649.033447 eV Total energy + Delta-G solvation = -3971.928362 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.30603 -40.31486 -37.67759 -36.92814 -35.31831 -34.36594 -33.35855 -32.20313 -31.27798 -30.50090 -30.21259 -27.48217 -27.31395 -24.75067 -24.08802 -23.68094 -22.21577 -21.63022 -21.11757 -20.82626 -20.68065 -18.23857 -17.79043 -17.14260 -16.97467 -16.53733 -16.37503 -15.36306 -15.25047 -15.02625 -14.86830 -14.64196 -14.08574 -14.00353 -13.97794 -13.67332 -13.61809 -13.50409 -13.16989 -13.00174 -12.98538 -12.96313 -12.40903 -12.28655 -12.23269 -11.80102 -11.52307 -11.31526 -11.21172 -11.02158 -10.81057 -10.73808 -10.54777 -10.46387 -10.35006 -10.27418 -10.02457 -9.67981 -9.35911 -9.29820 -8.86463 -8.20035 -6.91544 -5.76400 -3.04893 0.04638 0.58441 2.05759 2.19527 2.60539 2.74573 3.26338 3.43756 3.47850 3.49154 3.76332 3.96941 4.09106 4.22719 4.43886 4.47942 4.52910 4.62700 4.79404 4.82759 4.91536 4.95089 4.99221 5.04116 5.21235 5.23116 5.34678 5.37381 5.41563 5.51895 5.53488 5.56727 5.58913 5.66183 5.75055 5.85519 5.92277 5.92968 6.06509 6.14343 6.16394 6.27766 6.31867 6.36457 6.44341 6.53984 6.87805 6.91678 7.17428 7.38234 7.69514 7.88046 8.43055 9.53668 10.12789 10.47335 11.46572 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009637 B = 0.001997 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2904.696130 B =14017.456461 C =16196.912872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.059 4.059 3 C 0.034 3.966 4 N -0.474 5.474 5 C 0.204 3.796 6 C 0.004 3.996 7 C -0.127 4.127 8 C 0.566 3.434 9 O -0.532 6.532 10 N -0.714 5.714 11 C 0.141 3.859 12 H 0.092 0.908 13 C -0.163 4.163 14 C -0.127 4.127 15 C -0.115 4.115 16 C -0.125 4.125 17 C 0.152 3.848 18 N -0.735 5.735 19 C -0.239 4.239 20 H 0.069 0.931 21 C -0.016 4.016 22 N -0.935 5.935 23 Si 0.908 3.092 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.116 4.116 28 C 0.052 3.948 29 N -0.352 5.352 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.184 0.816 34 H 0.166 0.834 35 H 0.400 0.600 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.015 0.985 46 H 0.017 0.983 47 H 0.383 0.617 48 H 0.255 0.745 49 H 0.155 0.845 50 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.436 21.794 19.985 29.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.174 4.174 3 C -0.119 4.119 4 N -0.194 5.194 5 C -0.036 4.036 6 C -0.018 4.018 7 C -0.136 4.136 8 C 0.353 3.647 9 O -0.409 6.409 10 N -0.366 5.366 11 C 0.037 3.963 12 H 0.110 0.890 13 C -0.222 4.222 14 C -0.165 4.165 15 C -0.153 4.153 16 C -0.163 4.163 17 C 0.025 3.975 18 N -0.379 5.379 19 C -0.371 4.371 20 H 0.087 0.913 21 C -0.212 4.212 22 N -0.584 5.584 23 Si 0.739 3.261 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.137 4.137 28 C -0.069 4.069 29 N -0.025 5.025 30 H 0.093 0.907 31 H 0.106 0.894 32 H 0.086 0.914 33 H 0.201 0.799 34 H 0.183 0.817 35 H 0.235 0.765 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.100 0.900 40 H 0.087 0.913 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.033 0.967 46 H 0.034 0.966 47 H 0.217 0.783 48 H 0.065 0.935 49 H 0.172 0.828 50 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -1.979 22.577 19.809 30.100 hybrid contribution -1.595 -1.086 -0.890 2.125 sum -3.574 21.491 18.919 28.854 Atomic orbital electron populations 1.20232 0.86154 1.03861 1.02991 1.21410 0.95008 0.85204 1.15740 1.22418 0.87748 0.98838 1.02942 1.70684 1.21912 1.06074 1.20682 1.20702 0.83613 0.90972 1.08359 1.20703 0.98371 0.89439 0.93246 1.19917 0.93523 0.93518 1.06609 1.17837 0.88021 0.82365 0.76507 1.90813 1.20605 1.79940 1.49549 1.45982 1.10570 1.05273 1.74773 1.21109 0.89966 0.88289 0.96951 0.89023 1.22181 1.01568 1.02284 0.96146 1.21950 1.02180 0.95798 0.96584 1.21532 1.01320 0.98247 0.94202 1.21726 1.00919 0.96605 0.97086 1.20646 0.96075 0.90048 0.90772 1.42382 1.78657 1.07176 1.09672 1.19207 1.35691 0.95215 0.86950 0.91302 1.24750 1.02460 0.95784 0.98172 1.69649 1.53346 1.00128 1.35251 0.86253 0.78377 0.76555 0.84930 1.21252 1.21657 1.21292 1.20805 0.90796 1.00215 1.01918 1.21425 1.01486 0.80192 1.03810 1.42734 1.08903 1.05775 1.45097 0.90676 0.89448 0.91448 0.79924 0.81686 0.76461 0.92177 0.92436 0.91335 0.90000 0.91301 0.92182 0.91880 0.92009 0.92141 0.96682 0.96561 0.78349 0.93489 0.82777 0.81457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.29 10.30 36.01 0.37 0.08 16 2 C -0.06 -0.46 7.02 -81.54 -0.57 -1.03 16 3 C 0.03 0.30 11.75 -17.96 -0.21 0.09 16 4 N -0.47 -5.65 11.31 -12.80 -0.14 -5.79 16 5 C 0.20 2.28 7.79 -155.97 -1.22 1.06 16 6 C 0.00 0.04 9.70 -38.59 -0.37 -0.34 16 7 C -0.13 -1.17 5.90 -104.63 -0.62 -1.78 16 8 C 0.57 6.00 7.74 -12.41 -0.10 5.90 16 9 O -0.53 -7.49 16.03 5.29 0.08 -7.41 16 10 N -0.71 -5.96 4.48 -54.81 -0.25 -6.20 16 11 C 0.14 1.26 2.57 -67.93 -0.17 1.08 16 12 H 0.09 0.99 7.58 -51.93 -0.39 0.60 16 13 C -0.16 -1.32 9.48 37.16 0.35 -0.97 16 14 C -0.13 -1.13 4.75 -26.73 -0.13 -1.26 16 15 C -0.11 -1.33 5.10 -26.73 -0.14 -1.47 16 16 C -0.13 -1.91 5.33 -26.73 -0.14 -2.06 16 17 C 0.15 3.08 6.26 -4.04 -0.03 3.05 16 18 N -0.73 -18.98 5.60 -59.91 -0.34 -19.32 16 19 C -0.24 -6.84 9.99 -15.06 -0.15 -6.99 16 20 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 21 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 22 N -0.93 -28.48 13.06 55.49 0.72 -27.76 16 23 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 27 C -0.12 -0.76 9.48 -39.54 -0.37 -1.13 16 28 C 0.05 0.34 10.80 -16.68 -0.18 0.16 16 29 N -0.35 -3.15 2.94 -58.55 -0.17 -3.32 16 30 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.07 0.23 8.12 -51.93 -0.42 -0.20 16 33 H 0.18 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.17 1.74 7.67 -52.49 -0.40 1.34 16 35 H 0.40 2.38 6.67 -40.82 -0.27 2.11 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.67 7.75 -51.93 -0.40 0.26 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.38 10.30 7.67 -40.82 -0.31 9.99 16 48 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 49 H 0.15 0.54 6.46 -52.49 -0.34 0.21 16 50 H 0.17 0.54 8.04 -52.49 -0.42 0.12 16 LS Contribution 415.62 15.07 6.26 6.26 Total: -1.00 -36.40 415.62 -10.63 -47.03 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -8.01 Total: 5.10 kcal Atomic # 6 Polarization: -2.38 SS G_CDS: -3.77 Total: -6.15 kcal Atomic # 7 Polarization: -62.22 SS G_CDS: -0.17 Total: -62.40 kcal Atomic # 8 Polarization: -7.49 SS G_CDS: 0.08 Total: -7.41 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -36.40 -10.63 -47.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170784989.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.576 kcal (2) G-P(sol) polarization free energy of solvation -36.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds