Wall clock time and date at job start Wed Apr 1 2020 03:59:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35450 * 126.39116 * 2 1 4 4 N 1.33189 * 108.62105 * 180.02562 * 3 2 1 5 5 C 1.32644 * 109.12549 * 0.02562 * 4 3 2 6 6 C 1.40654 * 132.14823 * 180.31498 * 5 4 3 7 7 C 1.38442 * 119.08607 * 180.18837 * 6 5 4 8 8 C 1.47658 * 120.36670 * 179.73652 * 7 6 5 9 9 O 1.21583 * 120.00339 * 359.73090 * 8 7 6 10 10 N 1.34777 * 119.99657 * 179.45602 * 8 7 6 11 11 C 1.46499 * 120.00195 * 180.27903 * 10 8 7 12 12 H 1.08999 * 109.46621 * 324.99673 * 11 10 8 13 13 C 1.52998 * 109.47145 * 84.99285 * 11 10 8 14 14 C 1.52995 * 109.47290 * 204.99666 * 11 10 8 15 15 C 1.53001 * 109.47285 * 64.99571 * 14 11 10 16 16 C 1.52999 * 109.47616 * 179.97438 * 15 14 11 17 17 C 1.53001 * 109.47098 * 180.02562 * 16 15 14 18 18 N 1.46502 * 109.46496 * 180.02562 * 17 16 15 19 19 C 1.36945 * 119.99761 * 180.02562 * 18 17 16 20 20 H 1.07999 * 119.99487 * 359.97438 * 19 18 17 21 21 C 1.38808 * 120.00078 * 179.97438 * 19 18 17 22 22 N 1.31617 * 120.00148 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 120.00126 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46806 * 59.99883 * 23 21 19 25 25 H 1.48498 * 109.47295 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47266 * 300.00261 * 23 21 19 27 27 C 1.41771 * 119.25506 * 359.47249 * 7 6 5 28 28 C 1.34539 * 120.15106 * 0.26414 * 27 7 6 29 29 N 1.36441 * 126.38901 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.47029 * 270.00263 * 1 2 3 31 31 H 1.09005 * 109.46866 * 29.99328 * 1 2 3 32 32 H 1.08997 * 109.47146 * 149.99483 * 1 2 3 33 33 H 1.08001 * 125.69088 * 0.02562 * 3 2 1 34 34 H 1.07995 * 120.45375 * 359.93680 * 6 5 4 35 35 H 0.97000 * 119.99736 * 0.27175 * 10 8 7 36 36 H 1.08995 * 109.47315 * 300.00483 * 13 11 10 37 37 H 1.08999 * 109.47045 * 60.00647 * 13 11 10 38 38 H 1.09007 * 109.46732 * 180.02562 * 13 11 10 39 39 H 1.09000 * 109.47218 * 184.99612 * 14 11 10 40 40 H 1.09000 * 109.47293 * 304.99778 * 14 11 10 41 41 H 1.09001 * 109.47549 * 300.00190 * 15 14 11 42 42 H 1.09005 * 109.47234 * 60.00003 * 15 14 11 43 43 H 1.09000 * 109.47132 * 300.00191 * 16 15 14 44 44 H 1.09000 * 109.47048 * 60.00155 * 16 15 14 45 45 H 1.08992 * 109.47246 * 299.99789 * 17 16 15 46 46 H 1.08991 * 109.47284 * 60.00685 * 17 16 15 47 47 H 0.96996 * 120.00607 * 359.97438 * 18 17 16 48 48 H 0.97002 * 120.00424 * 179.97438 * 22 21 19 49 49 H 1.08001 * 119.92467 * 180.25253 * 27 7 6 50 50 H 1.07996 * 119.51900 * 180.02562 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3106 1.0904 0.0000 4 7 3.5790 0.6839 -0.0006 5 6 3.6103 -0.6422 -0.0015 6 6 4.6752 -1.5611 0.0034 7 6 4.3943 -2.9168 -0.0032 8 6 5.4904 -3.9062 -0.0042 9 8 6.6472 -3.5320 -0.0042 10 7 5.2084 -5.2241 0.0005 11 6 6.2958 -6.2058 0.0057 12 1 7.1303 -5.8267 -0.5842 13 6 6.7568 -6.4487 1.4442 14 6 5.7991 -7.5203 -0.5995 15 6 5.4552 -7.3048 -2.0747 16 6 4.9591 -8.6194 -2.6801 17 6 4.6159 -8.4040 -4.1555 18 7 4.1402 -9.6627 -4.7349 19 6 3.7724 -9.7138 -6.0531 20 1 3.8325 -8.8261 -6.6652 21 6 3.3222 -10.9065 -6.6022 22 7 3.2494 -11.9885 -5.8563 23 14 2.8197 -10.9761 -8.4001 24 1 3.9772 -10.6030 -9.2522 25 1 2.3803 -12.3537 -8.7383 26 1 1.7029 -10.0270 -8.6390 27 6 3.0426 -3.3442 -0.0033 28 6 2.0475 -2.4388 -0.0023 29 7 2.3165 -1.0984 -0.0005 30 1 -0.3633 0.0000 1.0277 31 1 -0.3633 0.8901 -0.5138 32 1 -0.3633 -0.8899 -0.5139 33 1 1.9783 2.1180 0.0004 34 1 5.6978 -1.2139 0.0080 35 1 4.2855 -5.5226 0.0005 36 1 7.1106 -5.5122 1.8753 37 1 5.9223 -6.8278 2.0340 38 1 7.5662 -7.1788 1.4479 39 1 6.5791 -8.2769 -0.5150 40 1 4.9100 -7.8537 -0.0642 41 1 4.6751 -6.5482 -2.1593 42 1 6.3443 -6.9714 -2.6101 43 1 5.7395 -9.3757 -2.5957 44 1 4.0701 -8.9533 -2.1449 45 1 3.8357 -7.6477 -4.2404 46 1 5.5050 -8.0705 -4.6904 47 1 4.0866 -10.4601 -4.1852 48 1 2.9345 -12.8219 -6.2399 49 1 2.8111 -4.3992 -0.0042 50 1 1.0214 -2.7758 -0.0020 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170784989.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:33 Heat of formation + Delta-G solvation = 21.055134 kcal Electronic energy + Delta-G solvation = -28621.937068 eV Core-core repulsion = 24649.033447 eV Total energy + Delta-G solvation = -3972.903620 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.93636 -41.12544 -38.39129 -37.85291 -36.84315 -35.02462 -34.80580 -33.21472 -32.35793 -31.46692 -31.01560 -28.80534 -27.86339 -25.97654 -25.22538 -24.33506 -23.62429 -22.22517 -22.07585 -21.90206 -21.56998 -19.13127 -18.93910 -18.43281 -17.73100 -17.18482 -17.12398 -16.68552 -16.28435 -16.09195 -15.74478 -15.64659 -15.33443 -15.26898 -14.74073 -14.61591 -14.51266 -14.18912 -14.16835 -14.03537 -13.85795 -13.34169 -13.25777 -13.01645 -12.88617 -12.87960 -12.85119 -12.83313 -12.43546 -12.27621 -12.19656 -11.92316 -11.87022 -11.78966 -11.48373 -11.38571 -11.23655 -11.13622 -10.92786 -10.15331 -9.92589 -9.00983 -8.81379 -7.96408 -5.25486 -0.64895 -0.00398 1.46503 1.49404 1.49693 1.54827 1.56011 1.88841 2.00431 2.54281 2.55329 3.16132 3.36633 3.39942 3.52041 3.63017 3.68114 3.90985 4.03612 4.05634 4.07944 4.15193 4.33129 4.33585 4.38055 4.43492 4.49307 4.62016 4.67366 4.72208 4.77747 4.80969 4.88545 4.90255 4.95273 5.00991 5.02539 5.04989 5.10131 5.13434 5.29528 5.34557 5.35689 5.44361 5.46337 5.55038 5.55282 5.57525 5.97204 6.26568 6.47309 6.72929 7.12708 7.32314 8.09447 8.32709 9.26825 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.009637 B = 0.001997 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2904.696130 B =14017.456461 C =16196.912872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.051 4.051 3 C 0.013 3.987 4 N -0.517 5.517 5 C 0.177 3.823 6 C -0.022 4.022 7 C -0.123 4.123 8 C 0.564 3.436 9 O -0.575 6.575 10 N -0.699 5.699 11 C 0.143 3.857 12 H 0.069 0.931 13 C -0.158 4.158 14 C -0.116 4.116 15 C -0.107 4.107 16 C -0.112 4.112 17 C 0.147 3.853 18 N -0.749 5.749 19 C -0.251 4.251 20 H 0.072 0.928 21 C -0.076 4.076 22 N -0.968 5.968 23 Si 0.975 3.025 24 H -0.280 1.280 25 H -0.293 1.293 26 H -0.276 1.276 27 C -0.117 4.117 28 C 0.056 3.944 29 N -0.357 5.357 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.207 0.793 34 H 0.147 0.853 35 H 0.415 0.585 36 H 0.041 0.959 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.068 0.932 42 H 0.052 0.948 43 H 0.056 0.944 44 H 0.066 0.934 45 H 0.019 0.981 46 H 0.010 0.990 47 H 0.375 0.625 48 H 0.252 0.748 49 H 0.190 0.810 50 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.990 21.462 20.397 30.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.166 4.166 3 C -0.140 4.140 4 N -0.237 5.237 5 C -0.063 4.063 6 C -0.043 4.043 7 C -0.132 4.132 8 C 0.352 3.648 9 O -0.456 6.456 10 N -0.352 5.352 11 C 0.039 3.961 12 H 0.087 0.913 13 C -0.216 4.216 14 C -0.154 4.154 15 C -0.145 4.145 16 C -0.150 4.150 17 C 0.021 3.979 18 N -0.391 5.391 19 C -0.383 4.383 20 H 0.090 0.910 21 C -0.269 4.269 22 N -0.619 5.619 23 Si 0.803 3.197 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.202 1.202 27 C -0.138 4.138 28 C -0.065 4.065 29 N -0.030 5.030 30 H 0.107 0.893 31 H 0.120 0.880 32 H 0.098 0.902 33 H 0.224 0.776 34 H 0.165 0.835 35 H 0.253 0.747 36 H 0.060 0.940 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.108 0.892 41 H 0.087 0.913 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.085 0.915 45 H 0.037 0.963 46 H 0.028 0.972 47 H 0.206 0.794 48 H 0.061 0.939 49 H 0.207 0.793 50 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -4.551 22.263 20.231 30.425 hybrid contribution -0.810 -0.927 -1.002 1.587 sum -5.361 21.336 19.229 29.219 Atomic orbital electron populations 1.20401 0.83056 1.05223 1.04254 1.22077 0.96620 0.84420 1.13499 1.22981 0.87110 1.00599 1.03286 1.70608 1.23931 1.07033 1.22125 1.20710 0.84784 0.90998 1.09815 1.20611 0.97823 0.90406 0.95503 1.19919 0.94599 0.92493 1.06198 1.18081 0.87707 0.83160 0.75889 1.90792 1.22443 1.80687 1.51672 1.45878 1.11370 1.04394 1.73524 1.21035 0.89517 0.88189 0.97343 0.91278 1.22126 1.02471 1.01696 0.95339 1.21851 1.03282 0.95652 0.94579 1.21447 1.01021 0.96295 0.95722 1.21597 1.01085 0.98414 0.93874 1.20867 0.95484 0.87884 0.93679 1.42621 1.78791 1.08701 1.09028 1.19607 1.34960 0.95355 0.88330 0.90994 1.25598 1.03188 0.95560 1.02507 1.69801 1.54610 1.00491 1.36974 0.85198 0.78230 0.76409 0.79846 1.20572 1.21865 1.20217 1.21150 0.89158 1.02032 1.01448 1.22151 1.03372 0.79023 1.01909 1.42975 1.08200 1.07025 1.44798 0.89287 0.87956 0.90217 0.77630 0.83492 0.74680 0.93967 0.90782 0.90439 0.89447 0.89221 0.91312 0.92875 0.92543 0.91500 0.96301 0.97222 0.79363 0.93886 0.79339 0.77442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.33 10.30 71.24 0.73 0.40 16 2 C -0.05 -0.71 7.02 41.20 0.29 -0.43 16 3 C 0.01 0.22 11.75 83.84 0.99 1.21 16 4 N -0.52 -13.02 11.31 -194.41 -2.20 -15.21 16 5 C 0.18 4.13 7.79 133.97 1.04 5.18 16 6 C -0.02 -0.50 9.70 22.91 0.22 -0.28 16 7 C -0.12 -2.26 5.90 -19.87 -0.12 -2.37 16 8 C 0.56 11.99 7.74 86.73 0.67 12.66 16 9 O -0.58 -17.15 16.03 -3.98 -0.06 -17.22 16 10 N -0.70 -10.49 4.48 -445.59 -2.00 -12.49 16 11 C 0.14 2.35 2.57 44.99 0.12 2.47 16 12 H 0.07 1.49 7.58 -2.39 -0.02 1.48 16 13 C -0.16 -2.31 9.48 71.98 0.68 -1.62 16 14 C -0.12 -1.74 4.75 30.59 0.15 -1.60 16 15 C -0.11 -2.25 5.10 30.59 0.16 -2.09 16 16 C -0.11 -3.22 5.33 30.59 0.16 -3.06 16 17 C 0.15 5.82 6.26 86.38 0.54 6.36 16 18 N -0.75 -38.47 5.60 -343.46 -1.92 -40.40 16 19 C -0.25 -14.23 9.99 84.03 0.84 -13.39 16 20 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 21 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 22 N -0.97 -59.14 13.06 21.65 0.28 -58.86 16 23 Si 0.97 46.10 29.55 68.60 2.03 48.13 16 24 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 25 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 26 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 27 C -0.12 -1.24 9.48 22.30 0.21 -1.03 16 28 C 0.06 0.56 10.80 83.08 0.90 1.46 16 29 N -0.36 -5.96 2.94 -339.15 -1.00 -6.96 16 30 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.10 0.20 8.14 -2.38 -0.02 0.18 16 32 H 0.08 0.21 8.12 -2.39 -0.02 0.19 16 33 H 0.21 2.18 8.06 -2.91 -0.02 2.16 16 34 H 0.15 3.67 7.67 -2.91 -0.02 3.65 16 35 H 0.41 3.59 6.67 -92.71 -0.62 2.97 16 36 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.08 0.99 8.14 -2.38 -0.02 0.98 16 39 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.07 1.34 7.75 -2.39 -0.02 1.32 16 42 H 0.05 1.24 8.14 -2.38 -0.02 1.22 16 43 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 47 H 0.37 20.18 7.67 -92.71 -0.71 19.47 16 48 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 49 H 0.19 0.53 6.46 -2.91 -0.02 0.51 16 50 H 0.21 0.32 8.04 -2.91 -0.02 0.30 16 Total: -1.00 -81.72 415.62 2.80 -78.92 By element: Atomic # 1 Polarization: 24.53 SS G_CDS: -0.38 Total: 24.15 kcal Atomic # 6 Polarization: -8.11 SS G_CDS: 8.05 Total: -0.06 kcal Atomic # 7 Polarization: -127.09 SS G_CDS: -6.84 Total: -133.92 kcal Atomic # 8 Polarization: -17.15 SS G_CDS: -0.06 Total: -17.22 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -81.72 2.80 -78.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170784989.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.977 kcal (2) G-P(sol) polarization free energy of solvation -81.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds