Wall clock time and date at job start Wed Apr 1 2020 03:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35455 * 126.39224 * 2 1 4 4 N 1.33181 * 108.62091 * 179.73398 * 3 2 1 5 5 C 1.32654 * 109.12516 * 359.97438 * 4 3 2 6 6 C 1.40652 * 132.14927 * 180.02562 * 5 4 3 7 7 C 1.38437 * 119.08873 * 180.02562 * 6 5 4 8 8 C 1.47656 * 120.37105 * 179.97438 * 7 6 5 9 9 O 1.21583 * 119.99674 * 359.97169 * 8 7 6 10 10 N 1.34773 * 120.00193 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00209 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.46992 * 179.97438 * 11 10 8 13 13 C 1.52999 * 109.46907 * 180.02562 * 12 11 10 14 14 C 1.53007 * 109.47188 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.47185 * 180.02562 * 14 13 12 16 16 C 1.52997 * 109.47270 * 180.02562 * 15 14 13 17 17 N 1.46498 * 109.47357 * 179.97438 * 16 15 14 18 18 C 1.36941 * 119.99950 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99699 * 0.02562 * 18 17 16 20 20 C 1.38809 * 119.99785 * 180.02562 * 18 17 16 21 21 N 1.31622 * 120.00070 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99847 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47187 * 59.99913 * 22 20 18 24 24 H 1.48500 * 109.47073 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47284 * 299.99991 * 22 20 18 26 26 C 1.41769 * 119.25709 * 359.94997 * 7 6 5 27 27 C 1.34541 * 120.15016 * 0.02562 * 26 7 6 28 28 N 1.36432 * 126.38807 * 179.67903 * 2 1 3 29 29 H 1.09004 * 109.46678 * 90.02720 * 1 2 3 30 30 H 1.08997 * 109.47702 * 210.02841 * 1 2 3 31 31 H 1.08999 * 109.47077 * 330.03421 * 1 2 3 32 32 H 1.07998 * 125.68643 * 359.70876 * 3 2 1 33 33 H 1.07998 * 120.45402 * 359.96033 * 6 5 4 34 34 H 0.97005 * 119.99745 * 359.97438 * 10 8 7 35 35 H 1.09001 * 109.47098 * 300.00207 * 11 10 8 36 36 H 1.09004 * 109.47015 * 60.00160 * 11 10 8 37 37 H 1.09001 * 109.47426 * 300.00078 * 12 11 10 38 38 H 1.08992 * 109.47398 * 60.00453 * 12 11 10 39 39 H 1.09001 * 109.47706 * 299.99789 * 13 12 11 40 40 H 1.09004 * 109.47117 * 60.00220 * 13 12 11 41 41 H 1.09005 * 109.46669 * 299.99698 * 14 13 12 42 42 H 1.08996 * 109.47064 * 59.99820 * 14 13 12 43 43 H 1.09001 * 109.46758 * 300.00014 * 15 14 13 44 44 H 1.08996 * 109.47591 * 59.99745 * 15 14 13 45 45 H 1.09005 * 109.47042 * 300.00184 * 16 15 14 46 46 H 1.09004 * 109.46872 * 59.99669 * 16 15 14 47 47 H 0.96991 * 119.99921 * 0.02562 * 17 16 15 48 48 H 0.97002 * 119.99623 * 180.02562 * 21 20 18 49 49 H 1.08001 * 119.92644 * 179.97438 * 26 7 6 50 50 H 1.07996 * 119.52727 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3106 1.0904 0.0000 4 7 3.5789 0.6839 0.0059 5 6 3.6102 -0.6423 0.0102 6 6 4.6750 -1.5612 0.0174 7 6 4.3941 -2.9168 0.0200 8 6 5.4901 -3.9063 0.0270 9 8 6.6469 -3.5321 0.0300 10 7 5.2081 -5.2242 0.0301 11 6 6.2955 -6.2059 0.0364 12 6 5.7073 -7.6183 0.0394 13 6 6.8429 -8.6436 0.0467 14 6 6.2548 -10.0561 0.0491 15 6 7.3904 -11.0814 0.0570 16 6 6.8023 -12.4938 0.0587 17 7 7.8897 -13.4756 0.0657 18 6 7.6031 -14.8146 0.0689 19 1 6.5755 -15.1469 0.0658 20 6 8.6334 -15.7448 0.0760 21 7 9.8857 -15.3398 0.0792 22 14 8.2425 -17.5714 0.0811 23 1 7.4589 -17.9134 -1.1331 24 1 9.5080 -18.3484 0.0880 25 1 7.4499 -17.9047 1.2918 26 6 3.0424 -3.3443 0.0165 27 6 2.0473 -2.4388 0.0101 28 7 2.3164 -1.0983 0.0062 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3634 -0.8897 0.5142 31 1 -0.3633 0.8903 0.5133 32 1 1.9783 2.1179 -0.0045 33 1 5.6977 -1.2141 0.0198 34 1 4.2851 -5.5227 0.0280 35 1 6.9123 -6.0706 -0.8520 36 1 6.9066 -6.0654 0.9280 37 1 5.0907 -7.7533 0.9281 38 1 5.0959 -7.7592 -0.8518 39 1 7.4599 -8.5089 -0.8417 40 1 7.4540 -8.5026 0.9383 41 1 5.6376 -10.1912 0.9374 42 1 5.6440 -10.1968 -0.8426 43 1 8.0079 -10.9464 -0.8310 44 1 8.0009 -10.9406 0.9489 45 1 6.1844 -12.6291 0.9465 46 1 6.1921 -12.6344 -0.8335 47 1 8.8125 -13.1771 0.0688 48 1 10.6057 -15.9898 0.0839 49 1 2.8110 -4.3992 0.0180 50 1 1.0212 -2.7757 0.0078 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001178483475.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:09 Heat of formation + Delta-G solvation = 39.746280 kcal Electronic energy + Delta-G solvation = -27204.753264 eV Core-core repulsion = 23232.660152 eV Total energy + Delta-G solvation = -3972.093111 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.45364 -40.30862 -37.66170 -36.87152 -35.50599 -34.51477 -34.03339 -32.28428 -31.70082 -30.66222 -30.00683 -27.82083 -26.75548 -24.78658 -23.92245 -23.58325 -22.26618 -21.78520 -21.42770 -20.67744 -20.66238 -18.29892 -17.96311 -17.27320 -16.97379 -16.69728 -16.29598 -16.17794 -15.35231 -15.31926 -15.02301 -14.62537 -14.35561 -14.19357 -14.06861 -13.83511 -13.72132 -13.49018 -13.40843 -13.14655 -13.01491 -12.75489 -12.45679 -12.38683 -12.36410 -11.79208 -11.40013 -11.36620 -11.21439 -10.93187 -10.74609 -10.73949 -10.68186 -10.54512 -10.36333 -10.27324 -9.98284 -9.63945 -9.53176 -9.45163 -8.84023 -8.34853 -6.88876 -5.73852 -3.02409 -0.10541 0.42560 1.90615 2.04210 2.46297 2.58637 3.11033 3.45329 3.49229 3.50777 3.61160 3.81118 3.93389 4.07845 4.27713 4.37839 4.47632 4.62170 4.65217 4.70168 4.76020 4.85269 4.88532 4.91246 5.07716 5.19819 5.21183 5.32609 5.35095 5.39382 5.43336 5.54075 5.61750 5.66265 5.68776 5.77379 5.90702 5.93350 6.00093 6.01047 6.11324 6.32106 6.33043 6.39038 6.41119 6.47656 6.91238 6.95271 6.99096 7.24413 7.71257 7.71387 8.45576 9.56090 10.15736 10.50206 11.49227 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.035779 B = 0.001132 C = 0.001099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.398961 B =24734.136297 C =25469.577405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.058 4.058 3 C 0.035 3.965 4 N -0.473 5.473 5 C 0.204 3.796 6 C 0.006 3.994 7 C -0.128 4.128 8 C 0.563 3.437 9 O -0.529 6.529 10 N -0.722 5.722 11 C 0.117 3.883 12 C -0.131 4.131 13 C -0.117 4.117 14 C -0.113 4.113 15 C -0.127 4.127 16 C 0.152 3.848 17 N -0.735 5.735 18 C -0.241 4.241 19 H 0.069 0.931 20 C -0.015 4.015 21 N -0.935 5.935 22 Si 0.908 3.092 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.117 4.117 27 C 0.052 3.948 28 N -0.353 5.353 29 H 0.075 0.925 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.184 0.816 33 H 0.167 0.833 34 H 0.400 0.600 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.016 0.984 46 H 0.016 0.984 47 H 0.383 0.617 48 H 0.255 0.745 49 H 0.154 0.846 50 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.355 34.356 -0.175 40.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.173 4.173 3 C -0.119 4.119 4 N -0.192 5.192 5 C -0.037 4.037 6 C -0.015 4.015 7 C -0.137 4.137 8 C 0.349 3.651 9 O -0.406 6.406 10 N -0.374 5.374 11 C -0.006 4.006 12 C -0.169 4.169 13 C -0.155 4.155 14 C -0.151 4.151 15 C -0.165 4.165 16 C 0.025 3.975 17 N -0.379 5.379 18 C -0.372 4.372 19 H 0.087 0.913 20 C -0.211 4.211 21 N -0.584 5.584 22 Si 0.739 3.261 23 H -0.213 1.213 24 H -0.216 1.216 25 H -0.213 1.213 26 C -0.138 4.138 27 C -0.069 4.069 28 N -0.026 5.026 29 H 0.094 0.906 30 H 0.085 0.915 31 H 0.106 0.894 32 H 0.201 0.799 33 H 0.184 0.816 34 H 0.235 0.765 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.034 0.966 46 H 0.034 0.966 47 H 0.217 0.783 48 H 0.065 0.935 49 H 0.172 0.828 50 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -20.937 34.943 -0.172 40.736 hybrid contribution -1.097 -1.681 0.001 2.007 sum -22.034 33.262 -0.171 39.899 Atomic orbital electron populations 1.20234 0.86112 1.03799 1.03085 1.21416 0.95009 0.85188 1.15692 1.22441 0.87714 0.98895 1.02802 1.70698 1.21942 1.06059 1.20501 1.20704 0.83586 0.90981 1.08413 1.20727 0.98464 0.89433 0.92924 1.19889 0.93465 0.93502 1.06882 1.17859 0.88089 0.82303 0.76823 1.90839 1.20641 1.79913 1.49205 1.45904 1.10747 1.05512 1.75261 1.21526 0.89222 0.86877 1.03008 1.21835 0.99415 0.92859 1.02785 1.21522 0.97164 0.94044 1.02745 1.21499 0.98403 0.93339 1.01873 1.21731 0.97716 0.95011 1.02033 1.20655 0.91757 0.87634 0.97499 1.42386 1.04065 1.01982 1.89481 1.19214 0.92506 0.82820 1.42653 0.91287 1.24744 0.95206 0.98009 1.03097 1.69656 0.97803 1.33058 1.57834 0.86259 0.76763 0.85291 0.77832 1.21281 1.21647 1.21277 1.20782 0.90787 1.00129 1.02145 1.21415 1.01418 0.80239 1.03873 1.42740 1.08920 1.05768 1.45171 0.90595 0.91522 0.89410 0.79855 0.81594 0.76507 0.90963 0.90969 0.91219 0.91216 0.91548 0.91542 0.92110 0.92102 0.92070 0.92065 0.96622 0.96620 0.78328 0.93476 0.82840 0.81484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.16 10.30 36.00 0.37 0.21 16 2 C -0.06 -0.35 7.02 -81.54 -0.57 -0.93 16 3 C 0.04 0.26 11.75 -17.96 -0.21 0.05 16 4 N -0.47 -4.96 11.31 -12.80 -0.14 -5.11 16 5 C 0.20 1.95 7.79 -155.97 -1.22 0.73 16 6 C 0.01 0.05 9.70 -38.60 -0.37 -0.32 16 7 C -0.13 -0.96 5.90 -104.63 -0.62 -1.58 16 8 C 0.56 5.21 7.77 -12.42 -0.10 5.11 16 9 O -0.53 -7.02 16.36 5.29 0.09 -6.94 16 10 N -0.72 -4.85 5.51 -61.31 -0.34 -5.19 16 11 C 0.12 0.91 5.67 -4.05 -0.02 0.89 16 12 C -0.13 -0.91 5.33 -26.73 -0.14 -1.05 16 13 C -0.12 -1.10 5.21 -26.73 -0.14 -1.23 16 14 C -0.11 -1.32 5.21 -26.73 -0.14 -1.46 16 15 C -0.13 -2.02 5.33 -26.73 -0.14 -2.17 16 16 C 0.15 3.12 6.26 -4.04 -0.03 3.09 16 17 N -0.74 -19.28 5.60 -59.91 -0.34 -19.62 16 18 C -0.24 -6.93 9.99 -15.06 -0.15 -7.08 16 19 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 20 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 21 N -0.93 -28.80 13.06 55.49 0.72 -28.07 16 22 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 25 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 26 C -0.12 -0.51 9.48 -39.54 -0.37 -0.88 16 27 C 0.05 0.23 10.80 -16.68 -0.18 0.05 16 28 N -0.35 -2.52 2.94 -58.55 -0.17 -2.70 16 29 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 30 H 0.07 0.09 8.12 -51.93 -0.42 -0.33 16 31 H 0.09 0.08 8.14 -51.93 -0.42 -0.35 16 32 H 0.18 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.17 1.53 7.67 -52.49 -0.40 1.13 16 34 H 0.40 1.43 6.54 -40.82 -0.27 1.16 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 46 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 47 H 0.38 10.52 7.67 -40.82 -0.31 10.20 16 48 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 49 H 0.15 0.15 6.46 -52.49 -0.34 -0.19 16 50 H 0.17 0.15 8.03 -52.49 -0.42 -0.27 16 LS Contribution 417.36 15.07 6.29 6.29 Total: -1.00 -37.26 417.36 -11.10 -48.36 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -8.05 Total: 2.45 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -4.13 Total: -7.10 kcal Atomic # 7 Polarization: -60.42 SS G_CDS: -0.27 Total: -60.68 kcal Atomic # 8 Polarization: -7.02 SS G_CDS: 0.09 Total: -6.94 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -37.26 -11.10 -48.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178483475.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.105 kcal (2) G-P(sol) polarization free energy of solvation -37.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds