Wall clock time and date at job start Wed Apr 1 2020 03:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35455 * 126.39224 * 2 1 4 4 N 1.33181 * 108.62091 * 179.73398 * 3 2 1 5 5 C 1.32654 * 109.12516 * 359.97438 * 4 3 2 6 6 C 1.40652 * 132.14927 * 180.02562 * 5 4 3 7 7 C 1.38437 * 119.08873 * 180.02562 * 6 5 4 8 8 C 1.47656 * 120.37105 * 179.97438 * 7 6 5 9 9 O 1.21583 * 119.99674 * 359.97169 * 8 7 6 10 10 N 1.34773 * 120.00193 * 179.97438 * 8 7 6 11 11 C 1.46498 * 120.00209 * 179.97438 * 10 8 7 12 12 C 1.52995 * 109.46992 * 179.97438 * 11 10 8 13 13 C 1.52999 * 109.46907 * 180.02562 * 12 11 10 14 14 C 1.53007 * 109.47188 * 180.02562 * 13 12 11 15 15 C 1.52999 * 109.47185 * 180.02562 * 14 13 12 16 16 C 1.52997 * 109.47270 * 180.02562 * 15 14 13 17 17 N 1.46498 * 109.47357 * 179.97438 * 16 15 14 18 18 C 1.36941 * 119.99950 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99699 * 0.02562 * 18 17 16 20 20 C 1.38809 * 119.99785 * 180.02562 * 18 17 16 21 21 N 1.31622 * 120.00070 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99847 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47187 * 59.99913 * 22 20 18 24 24 H 1.48500 * 109.47073 * 179.97438 * 22 20 18 25 25 H 1.48498 * 109.47284 * 299.99991 * 22 20 18 26 26 C 1.41769 * 119.25709 * 359.94997 * 7 6 5 27 27 C 1.34541 * 120.15016 * 0.02562 * 26 7 6 28 28 N 1.36432 * 126.38807 * 179.67903 * 2 1 3 29 29 H 1.09004 * 109.46678 * 90.02720 * 1 2 3 30 30 H 1.08997 * 109.47702 * 210.02841 * 1 2 3 31 31 H 1.08999 * 109.47077 * 330.03421 * 1 2 3 32 32 H 1.07998 * 125.68643 * 359.70876 * 3 2 1 33 33 H 1.07998 * 120.45402 * 359.96033 * 6 5 4 34 34 H 0.97005 * 119.99745 * 359.97438 * 10 8 7 35 35 H 1.09001 * 109.47098 * 300.00207 * 11 10 8 36 36 H 1.09004 * 109.47015 * 60.00160 * 11 10 8 37 37 H 1.09001 * 109.47426 * 300.00078 * 12 11 10 38 38 H 1.08992 * 109.47398 * 60.00453 * 12 11 10 39 39 H 1.09001 * 109.47706 * 299.99789 * 13 12 11 40 40 H 1.09004 * 109.47117 * 60.00220 * 13 12 11 41 41 H 1.09005 * 109.46669 * 299.99698 * 14 13 12 42 42 H 1.08996 * 109.47064 * 59.99820 * 14 13 12 43 43 H 1.09001 * 109.46758 * 300.00014 * 15 14 13 44 44 H 1.08996 * 109.47591 * 59.99745 * 15 14 13 45 45 H 1.09005 * 109.47042 * 300.00184 * 16 15 14 46 46 H 1.09004 * 109.46872 * 59.99669 * 16 15 14 47 47 H 0.96991 * 119.99921 * 0.02562 * 17 16 15 48 48 H 0.97002 * 119.99623 * 180.02562 * 21 20 18 49 49 H 1.08001 * 119.92644 * 179.97438 * 26 7 6 50 50 H 1.07996 * 119.52727 * 180.02562 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3106 1.0904 0.0000 4 7 3.5789 0.6839 0.0059 5 6 3.6102 -0.6423 0.0102 6 6 4.6750 -1.5612 0.0174 7 6 4.3941 -2.9168 0.0200 8 6 5.4901 -3.9063 0.0270 9 8 6.6469 -3.5321 0.0300 10 7 5.2081 -5.2242 0.0301 11 6 6.2955 -6.2059 0.0364 12 6 5.7073 -7.6183 0.0394 13 6 6.8429 -8.6436 0.0467 14 6 6.2548 -10.0561 0.0491 15 6 7.3904 -11.0814 0.0570 16 6 6.8023 -12.4938 0.0587 17 7 7.8897 -13.4756 0.0657 18 6 7.6031 -14.8146 0.0689 19 1 6.5755 -15.1469 0.0658 20 6 8.6334 -15.7448 0.0760 21 7 9.8857 -15.3398 0.0792 22 14 8.2425 -17.5714 0.0811 23 1 7.4589 -17.9134 -1.1331 24 1 9.5080 -18.3484 0.0880 25 1 7.4499 -17.9047 1.2918 26 6 3.0424 -3.3443 0.0165 27 6 2.0473 -2.4388 0.0101 28 7 2.3164 -1.0983 0.0062 29 1 -0.3633 -0.0005 -1.0277 30 1 -0.3634 -0.8897 0.5142 31 1 -0.3633 0.8903 0.5133 32 1 1.9783 2.1179 -0.0045 33 1 5.6977 -1.2141 0.0198 34 1 4.2851 -5.5227 0.0280 35 1 6.9123 -6.0706 -0.8520 36 1 6.9066 -6.0654 0.9280 37 1 5.0907 -7.7533 0.9281 38 1 5.0959 -7.7592 -0.8518 39 1 7.4599 -8.5089 -0.8417 40 1 7.4540 -8.5026 0.9383 41 1 5.6376 -10.1912 0.9374 42 1 5.6440 -10.1968 -0.8426 43 1 8.0079 -10.9464 -0.8310 44 1 8.0009 -10.9406 0.9489 45 1 6.1844 -12.6291 0.9465 46 1 6.1921 -12.6344 -0.8335 47 1 8.8125 -13.1771 0.0688 48 1 10.6057 -15.9898 0.0839 49 1 2.8110 -4.3992 0.0180 50 1 1.0212 -2.7757 0.0078 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001178483475.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:08 Heat of formation + Delta-G solvation = 15.907065 kcal Electronic energy + Delta-G solvation = -27205.787010 eV Core-core repulsion = 23232.660152 eV Total energy + Delta-G solvation = -3973.126857 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.94369 -41.01382 -38.19715 -37.84965 -36.79433 -35.36698 -35.03245 -33.57316 -32.45794 -31.45323 -31.05438 -28.69586 -27.59516 -25.94700 -24.84427 -24.31767 -23.45615 -22.30096 -22.16038 -22.00212 -21.38826 -19.12930 -18.85768 -18.46956 -17.72373 -17.22033 -17.01566 -16.85202 -16.64520 -16.29341 -15.75055 -15.61487 -15.35651 -15.35012 -15.16523 -14.61987 -14.58479 -14.20455 -14.12298 -13.87609 -13.85262 -13.41297 -13.33417 -13.03600 -12.94937 -12.87611 -12.86255 -12.62310 -12.37875 -12.20802 -12.00086 -11.93501 -11.78496 -11.77754 -11.52582 -11.31524 -11.23235 -11.14675 -10.91728 -10.21028 -9.93069 -9.00854 -8.82057 -7.95750 -5.25405 -0.66574 -0.00913 1.47128 1.49176 1.50917 1.52188 1.57248 1.87546 1.95238 2.52273 2.56412 3.15257 3.37744 3.38613 3.51518 3.66695 3.74542 3.90877 4.01419 4.04707 4.05546 4.27026 4.27877 4.32062 4.33437 4.39798 4.48682 4.61471 4.66412 4.72318 4.78523 4.80696 4.85779 4.91631 4.99381 5.00208 5.02735 5.09291 5.11001 5.17902 5.31131 5.31316 5.36281 5.41572 5.48628 5.54427 5.56098 5.59125 5.97488 6.26877 6.42943 6.72821 7.08327 7.32275 8.09874 8.32338 9.27973 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.035779 B = 0.001132 C = 0.001099 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.398961 B =24734.136297 C =25469.577405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.049 4.049 3 C 0.011 3.989 4 N -0.519 5.519 5 C 0.177 3.823 6 C -0.024 4.024 7 C -0.122 4.122 8 C 0.560 3.440 9 O -0.579 6.579 10 N -0.703 5.703 11 C 0.118 3.882 12 C -0.117 4.117 13 C -0.115 4.115 14 C -0.103 4.103 15 C -0.118 4.118 16 C 0.148 3.852 17 N -0.752 5.752 18 C -0.252 4.252 19 H 0.076 0.924 20 C -0.077 4.077 21 N -0.972 5.972 22 Si 0.977 3.023 23 H -0.276 1.276 24 H -0.294 1.294 25 H -0.276 1.276 26 C -0.116 4.116 27 C 0.057 3.943 28 N -0.357 5.357 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.101 0.899 32 H 0.206 0.794 33 H 0.145 0.855 34 H 0.419 0.581 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.020 0.980 46 H 0.020 0.980 47 H 0.372 0.628 48 H 0.252 0.748 49 H 0.195 0.805 50 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.602 33.510 -0.168 42.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.164 4.164 3 C -0.141 4.141 4 N -0.240 5.240 5 C -0.063 4.063 6 C -0.045 4.045 7 C -0.131 4.131 8 C 0.347 3.653 9 O -0.460 6.460 10 N -0.355 5.355 11 C -0.005 4.005 12 C -0.155 4.155 13 C -0.153 4.153 14 C -0.141 4.141 15 C -0.156 4.156 16 C 0.022 3.978 17 N -0.394 5.394 18 C -0.384 4.384 19 H 0.094 0.906 20 C -0.269 4.269 21 N -0.623 5.623 22 Si 0.805 3.195 23 H -0.202 1.202 24 H -0.220 1.220 25 H -0.202 1.202 26 C -0.137 4.137 27 C -0.063 4.063 28 N -0.030 5.030 29 H 0.106 0.894 30 H 0.101 0.899 31 H 0.120 0.880 32 H 0.222 0.778 33 H 0.163 0.837 34 H 0.258 0.742 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.104 0.896 38 H 0.104 0.896 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.038 0.962 46 H 0.038 0.962 47 H 0.204 0.796 48 H 0.061 0.939 49 H 0.212 0.788 50 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -25.271 34.094 -0.165 42.439 hybrid contribution 0.159 -1.376 -0.004 1.385 sum -25.111 32.718 -0.169 41.244 Atomic orbital electron populations 1.20408 0.82905 1.05349 1.04263 1.22072 0.96624 0.84353 1.13302 1.22983 0.87123 1.00668 1.03359 1.70611 1.24045 1.07182 1.22114 1.20672 0.84836 0.90933 1.09875 1.20614 0.97810 0.90550 0.95558 1.19870 0.94653 0.92253 1.06345 1.18177 0.87786 0.83227 0.76088 1.90815 1.22770 1.80785 1.51639 1.45721 1.11640 1.04406 1.73769 1.21431 0.89449 0.87757 1.01882 1.21698 0.98518 0.90862 1.04387 1.21461 0.97986 0.93472 1.02399 1.21416 0.96837 0.92994 1.02841 1.21651 0.98999 0.93650 1.01303 1.20887 0.90607 0.88864 0.97482 1.42671 1.04898 1.02372 1.89496 1.19670 0.92890 0.84258 1.41584 0.90564 1.25631 0.95068 1.02689 1.03491 1.69825 0.98715 1.34307 1.59407 0.85164 0.76436 0.79563 0.78324 1.20196 1.22035 1.20187 1.21172 0.88813 1.02216 1.01482 1.22216 1.03495 0.78867 1.01713 1.42989 1.08079 1.07151 1.44803 0.89404 0.89862 0.87995 0.77772 0.83744 0.74250 0.92242 0.92249 0.89575 0.89572 0.92033 0.92025 0.91109 0.91102 0.92850 0.92840 0.96242 0.96243 0.79629 0.93940 0.78831 0.77068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.06 10.30 71.24 0.73 0.67 16 2 C -0.05 -0.51 7.02 41.20 0.29 -0.22 16 3 C 0.01 0.16 11.75 83.84 0.99 1.15 16 4 N -0.52 -11.78 11.31 -194.41 -2.20 -13.97 16 5 C 0.18 3.59 7.79 133.97 1.04 4.64 16 6 C -0.02 -0.48 9.70 22.91 0.22 -0.25 16 7 C -0.12 -1.81 5.90 -19.87 -0.12 -1.93 16 8 C 0.56 10.40 7.77 86.73 0.67 11.08 16 9 O -0.58 -16.48 16.36 -3.98 -0.07 -16.54 16 10 N -0.70 -8.14 5.51 -466.16 -2.57 -10.71 16 11 C 0.12 1.69 5.67 86.38 0.49 2.18 16 12 C -0.12 -1.26 5.33 30.59 0.16 -1.10 16 13 C -0.11 -1.93 5.21 30.60 0.16 -1.77 16 14 C -0.10 -2.15 5.21 30.60 0.16 -1.99 16 15 C -0.12 -3.66 5.33 30.59 0.16 -3.50 16 16 C 0.15 5.93 6.26 86.38 0.54 6.47 16 17 N -0.75 -39.60 5.60 -343.45 -1.92 -41.53 16 18 C -0.25 -14.46 9.99 84.03 0.84 -13.62 16 19 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 20 C -0.08 -4.48 5.50 84.86 0.47 -4.02 16 21 N -0.97 -60.65 13.06 21.65 0.28 -60.37 16 22 Si 0.98 46.36 29.55 68.60 2.03 48.39 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 24 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 25 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 26 C -0.12 -0.67 9.48 22.30 0.21 -0.45 16 27 C 0.06 0.31 10.80 83.08 0.90 1.21 16 28 N -0.36 -4.62 2.94 -339.14 -1.00 -5.61 16 29 H 0.09 -0.06 8.14 -2.39 -0.02 -0.08 16 30 H 0.08 -0.16 8.12 -2.39 -0.02 -0.18 16 31 H 0.10 -0.16 8.14 -2.39 -0.02 -0.18 16 32 H 0.21 1.67 8.06 -2.91 -0.02 1.64 16 33 H 0.14 3.30 7.67 -2.91 -0.02 3.27 16 34 H 0.42 1.45 6.54 -92.70 -0.61 0.84 16 35 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 37 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.06 1.10 8.14 -2.39 -0.02 1.09 16 40 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 41 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 42 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 45 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 46 H 0.02 0.78 8.14 -2.38 -0.02 0.76 16 47 H 0.37 20.84 7.67 -92.71 -0.71 20.13 16 48 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 49 H 0.19 -0.61 6.46 -2.91 -0.02 -0.63 16 50 H 0.21 -0.82 8.03 -2.91 -0.02 -0.84 16 Total: -1.00 -85.15 417.36 2.11 -83.04 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -0.37 Total: 18.76 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: 7.92 Total: -1.46 kcal Atomic # 7 Polarization: -124.78 SS G_CDS: -7.41 Total: -132.18 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.07 Total: -16.54 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -85.15 2.11 -83.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001178483475.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.951 kcal (2) G-P(sol) polarization free energy of solvation -85.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds