Wall clock time and date at job start Wed Apr 1 2020 03:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35449 * 125.68813 * 2 1 4 4 N 1.36440 * 107.22252 * 179.97438 * 3 2 1 5 5 C 1.36714 * 132.26772 * 180.02562 * 4 3 2 6 6 C 1.34546 * 120.95141 * 180.02562 * 5 4 3 7 7 C 1.41767 * 120.15165 * 359.95710 * 6 5 4 8 8 C 1.47647 * 120.37659 * 179.97438 * 7 6 5 9 9 O 1.21588 * 120.00467 * 180.02562 * 8 7 6 10 10 N 1.34776 * 119.99968 * 0.02589 * 8 7 6 11 11 C 1.46499 * 120.00283 * 179.97438 * 10 8 7 12 12 C 1.53005 * 109.47078 * 179.97438 * 11 10 8 13 13 C 1.53004 * 109.46917 * 179.97438 * 12 11 10 14 14 C 1.52995 * 109.46857 * 180.02562 * 13 12 11 15 15 C 1.53004 * 109.46857 * 180.02562 * 14 13 12 16 16 C 1.53005 * 109.46917 * 179.97438 * 15 14 13 17 17 N 1.46499 * 109.47078 * 180.02562 * 16 15 14 18 18 C 1.36938 * 120.00100 * 180.02562 * 17 16 15 19 19 H 1.07993 * 120.00166 * 359.97438 * 18 17 16 20 20 C 1.38811 * 119.99866 * 180.02562 * 18 17 16 21 21 N 1.31614 * 120.00311 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99914 * 179.97438 * 20 18 17 23 23 H 1.48493 * 109.46844 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.47139 * 119.99874 * 22 20 18 25 25 H 1.48497 * 109.47116 * 239.99701 * 22 20 18 26 26 C 1.38446 * 119.25517 * 0.02562 * 7 6 5 27 27 C 1.37190 * 106.96657 * 359.97438 * 4 3 2 28 28 N 1.32658 * 108.06554 * 359.77527 * 27 4 3 29 29 H 1.09002 * 109.47152 * 90.00276 * 1 2 3 30 30 H 1.09001 * 109.46980 * 330.00376 * 1 2 3 31 31 H 1.09004 * 109.47113 * 210.00357 * 1 2 3 32 32 H 1.07998 * 126.39114 * 359.93404 * 3 2 1 33 33 H 1.07997 * 119.52962 * 359.97321 * 5 4 3 34 34 H 1.08006 * 119.92140 * 179.97438 * 6 5 4 35 35 H 0.96999 * 119.99828 * 359.97438 * 10 8 7 36 36 H 1.09004 * 109.47357 * 299.99872 * 11 10 8 37 37 H 1.08998 * 109.47379 * 59.99931 * 11 10 8 38 38 H 1.08993 * 109.47255 * 299.99850 * 12 11 10 39 39 H 1.08999 * 109.46985 * 60.00584 * 12 11 10 40 40 H 1.09001 * 109.47148 * 300.00643 * 13 12 11 41 41 H 1.09006 * 109.47098 * 60.00312 * 13 12 11 42 42 H 1.09001 * 109.47674 * 300.00207 * 14 13 12 43 43 H 1.08999 * 109.47107 * 60.00627 * 14 13 12 44 44 H 1.08997 * 109.47495 * 300.00205 * 15 14 13 45 45 H 1.08999 * 109.46750 * 60.00408 * 15 14 13 46 46 H 1.08997 * 109.47298 * 300.00439 * 16 15 14 47 47 H 1.08999 * 109.46985 * 60.00665 * 16 15 14 48 48 H 0.97008 * 120.00165 * 0.02562 * 17 16 15 49 49 H 0.96999 * 120.00605 * 180.02562 * 21 20 18 50 50 H 1.08003 * 120.45771 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2972 1.1001 0.0000 4 7 3.5914 0.6680 0.0006 5 6 4.7840 1.3363 0.0013 6 6 5.9517 0.6680 0.0013 7 6 5.9609 -0.7496 0.0014 8 6 7.2395 -1.4880 0.0008 9 8 7.2394 -2.7039 0.0004 10 7 8.4067 -0.8142 0.0006 11 6 9.6754 -1.5468 0.0006 12 6 10.8384 -0.5526 -0.0002 13 6 12.1634 -1.3178 0.0004 14 6 13.3263 -0.3236 0.0002 15 6 14.6513 -1.0887 0.0001 16 6 15.8143 -0.0945 -0.0007 17 7 17.0830 -0.8271 -0.0014 18 6 18.2690 -0.1425 -0.0016 19 1 18.2691 0.9374 -0.0018 20 6 19.4710 -0.8367 -0.0028 21 7 19.4710 -2.1528 -0.0031 22 14 21.0889 0.0972 -0.0039 23 1 20.8176 1.5571 -0.0027 24 1 21.8685 -0.2619 1.2079 25 1 21.8666 -0.2614 -1.2171 26 6 4.7574 -1.4340 0.0010 27 6 3.5555 -0.7035 0.0015 28 7 2.2840 -1.0817 0.0064 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 0.8900 0.5138 31 1 -0.3633 -0.8900 0.5139 32 1 1.9649 2.1277 -0.0010 33 1 4.7889 2.4163 0.0010 34 1 6.8843 1.2129 0.0014 35 1 8.4068 0.1557 0.0005 36 1 9.7332 -2.1734 0.8907 37 1 9.7331 -2.1736 -0.8893 38 1 10.7805 0.0736 -0.8905 39 1 10.7810 0.0744 0.8895 40 1 12.2211 -1.9438 0.8908 41 1 12.2211 -1.9451 -0.8892 42 1 13.2689 0.3028 -0.8901 43 1 13.2685 0.3034 0.8899 44 1 14.7091 -1.7154 0.8901 45 1 14.7089 -1.7154 -0.8898 46 1 15.7563 0.5317 -0.8909 47 1 15.7569 0.5325 0.8891 48 1 17.0830 -1.7972 -0.0016 49 1 20.3109 -2.6380 -0.0035 50 1 4.7417 -2.5139 0.0015 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001179580241.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:57:19 Heat of formation + Delta-G solvation = 39.952893 kcal Electronic energy + Delta-G solvation = -27077.824533 eV Core-core repulsion = 23105.740381 eV Total energy + Delta-G solvation = -3972.084152 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.42340 -40.31452 -37.78271 -36.88184 -35.50671 -34.25690 -34.00132 -32.44410 -31.84264 -30.10715 -29.85909 -28.30655 -26.87362 -24.78577 -23.72854 -23.66737 -22.32937 -21.58839 -21.25767 -20.68074 -20.57007 -18.50380 -18.20520 -17.12402 -16.97035 -16.63150 -16.28952 -16.18075 -15.34977 -15.22313 -15.18041 -14.67039 -14.41203 -14.35517 -13.86843 -13.79387 -13.60836 -13.49143 -13.41050 -13.01561 -12.85762 -12.75894 -12.46417 -12.36799 -12.03779 -11.79890 -11.49223 -11.40118 -11.22103 -10.94513 -10.76176 -10.74930 -10.68250 -10.54010 -10.33809 -10.27762 -9.94758 -9.65026 -9.52955 -9.31104 -8.85294 -8.45859 -6.89102 -5.74446 -3.02914 -0.11053 0.43573 1.94567 2.05175 2.42883 2.57996 3.10203 3.44235 3.49419 3.52050 3.56304 3.76870 3.95489 4.10713 4.31872 4.47045 4.60272 4.62268 4.64204 4.70062 4.75163 4.90139 4.99607 5.13225 5.15807 5.19654 5.28159 5.33394 5.35029 5.41288 5.45673 5.53907 5.61565 5.65991 5.68674 5.75738 5.90469 5.93187 6.00313 6.03332 6.11148 6.31934 6.32818 6.40100 6.40760 6.47449 6.91011 6.95028 6.98803 7.27213 7.70994 7.72014 8.44922 9.55663 10.15284 10.49673 11.48807 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.046951 B = 0.001096 C = 0.001073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 596.227443 B =25533.329940 C =26082.599190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.060 3.940 3 C -0.089 4.089 4 N -0.354 5.354 5 C 0.053 3.947 6 C -0.119 4.119 7 C -0.126 4.126 8 C 0.563 3.437 9 O -0.529 6.529 10 N -0.722 5.722 11 C 0.117 3.883 12 C -0.131 4.131 13 C -0.117 4.117 14 C -0.113 4.113 15 C -0.127 4.127 16 C 0.152 3.848 17 N -0.736 5.736 18 C -0.239 4.239 19 H 0.070 0.930 20 C -0.015 4.015 21 N -0.934 5.934 22 Si 0.906 3.094 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.003 3.997 27 C 0.209 3.791 28 N -0.475 5.475 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.186 0.814 33 H 0.170 0.830 34 H 0.154 0.846 35 H 0.400 0.600 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.060 0.940 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.016 0.984 47 H 0.016 0.984 48 H 0.383 0.617 49 H 0.254 0.746 50 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -40.226 9.775 -0.002 41.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.074 4.074 3 C -0.222 4.222 4 N -0.026 5.026 5 C -0.068 4.068 6 C -0.140 4.140 7 C -0.135 4.135 8 C 0.349 3.651 9 O -0.406 6.406 10 N -0.374 5.374 11 C -0.006 4.006 12 C -0.169 4.169 13 C -0.155 4.155 14 C -0.151 4.151 15 C -0.165 4.165 16 C 0.025 3.975 17 N -0.380 5.380 18 C -0.370 4.370 19 H 0.088 0.912 20 C -0.211 4.211 21 N -0.583 5.583 22 Si 0.738 3.262 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.218 1.218 26 C -0.019 4.019 27 C -0.032 4.032 28 N -0.195 5.195 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.096 0.904 32 H 0.203 0.797 33 H 0.187 0.813 34 H 0.172 0.828 35 H 0.235 0.765 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.034 0.966 47 H 0.034 0.966 48 H 0.217 0.783 49 H 0.064 0.936 50 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -40.363 8.279 0.005 41.204 hybrid contribution 1.349 1.633 -0.013 2.118 sum -39.014 9.912 -0.008 40.253 Atomic orbital electron populations 1.20183 0.86485 1.03468 1.03039 1.21050 0.97116 0.87760 1.01487 1.22578 0.80647 1.01366 1.17583 1.42815 1.06238 1.08847 1.44681 1.21464 0.82679 0.98893 1.03774 1.20791 0.97757 0.93212 1.02289 1.19894 0.93669 0.93307 1.06635 1.17861 0.83308 0.87093 0.76836 1.90841 1.87406 1.13146 1.49182 1.45904 1.05821 1.10440 1.75246 1.21528 0.81120 0.94978 1.03013 1.21838 0.94025 0.98246 1.02790 1.21521 0.92758 0.98450 1.02747 1.21498 0.93884 0.97859 1.01879 1.21735 0.93832 0.98901 1.02038 1.20654 0.85726 0.93647 0.97502 1.42409 1.00173 1.05922 1.89451 1.19300 0.84282 0.91066 1.42360 0.91182 1.24745 0.97697 0.95523 1.03148 1.69669 1.25510 1.05134 1.58019 0.86118 0.84139 0.78769 0.77205 1.20559 1.21856 1.21850 1.20720 0.86489 1.01416 0.93228 1.20740 0.94311 0.80321 1.07841 1.70612 0.98030 1.29527 1.21370 0.90516 0.90612 0.90436 0.79679 0.81290 0.82808 0.76499 0.90960 0.90966 0.91210 0.91216 0.91545 0.91543 0.92104 0.92099 0.92061 0.92065 0.96616 0.96611 0.78329 0.93571 0.81614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.32 10.42 36.01 0.38 0.05 16 2 C 0.06 0.47 7.06 -83.00 -0.59 -0.12 16 3 C -0.09 -0.53 11.64 -16.50 -0.19 -0.73 16 4 N -0.35 -2.49 2.94 -62.75 -0.18 -2.68 16 5 C 0.05 0.22 10.91 -16.68 -0.18 0.04 16 6 C -0.12 -0.50 9.48 -39.54 -0.37 -0.88 16 7 C -0.13 -0.94 5.90 -104.63 -0.62 -1.56 16 8 C 0.56 5.19 7.77 -12.42 -0.10 5.09 16 9 O -0.53 -7.01 16.36 5.29 0.09 -6.92 16 10 N -0.72 -4.82 5.51 -61.31 -0.34 -5.16 16 11 C 0.12 0.91 5.67 -4.04 -0.02 0.88 16 12 C -0.13 -0.90 5.33 -26.73 -0.14 -1.05 16 13 C -0.12 -1.09 5.21 -26.73 -0.14 -1.23 16 14 C -0.11 -1.32 5.21 -26.73 -0.14 -1.46 16 15 C -0.13 -2.02 5.33 -26.73 -0.14 -2.17 16 16 C 0.15 3.12 6.26 -4.04 -0.03 3.09 16 17 N -0.74 -19.28 5.60 -59.91 -0.34 -19.61 16 18 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 19 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 20 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 21 N -0.93 -28.80 13.06 55.49 0.72 -28.08 16 22 Si 0.91 22.64 29.55 -169.99 -5.02 17.62 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 C 0.00 0.02 9.70 -38.59 -0.37 -0.35 16 27 C 0.21 2.00 7.79 -155.96 -1.22 0.79 16 28 N -0.47 -5.05 11.31 -9.02 -0.10 -5.16 16 29 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.08 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.19 0.41 8.06 -52.49 -0.42 -0.01 16 33 H 0.17 0.08 8.06 -52.49 -0.42 -0.34 16 34 H 0.15 0.13 6.46 -52.48 -0.34 -0.21 16 35 H 0.40 1.41 6.54 -40.82 -0.27 1.15 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 46 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 47 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 48 H 0.38 10.51 7.67 -40.82 -0.31 10.20 16 49 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 50 H 0.17 1.53 7.67 -52.48 -0.40 1.13 16 LS Contribution 417.56 15.07 6.29 6.29 Total: -1.00 -37.37 417.56 -11.06 -48.42 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -8.05 Total: 2.42 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: -4.12 Total: -7.15 kcal Atomic # 7 Polarization: -60.45 SS G_CDS: -0.24 Total: -60.68 kcal Atomic # 8 Polarization: -7.01 SS G_CDS: 0.09 Total: -6.92 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -37.37 -11.06 -48.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001179580241.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.376 kcal (2) G-P(sol) polarization free energy of solvation -37.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds