Wall clock time and date at job start Wed Apr 1 2020 03:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38822 * 120.42185 * 2 1 4 4 C 1.38781 * 118.50885 * 180.02562 * 3 2 1 5 5 N 1.32127 * 119.16527 * 0.02562 * 4 3 2 6 6 C 1.32452 * 120.76678 * 0.02562 * 5 4 3 7 7 C 1.48533 * 119.18109 * 179.71852 * 6 5 4 8 8 O 1.21469 * 119.99968 * 189.38263 * 7 6 5 9 9 N 1.34776 * 120.00390 * 9.39036 * 7 6 5 10 10 C 1.46925 * 120.63037 * 10.65150 * 9 7 6 11 11 C 1.53620 * 108.54369 * 126.37094 * 10 9 7 12 12 C 1.53033 * 109.24159 * 54.86046 * 11 10 9 13 13 N 1.46511 * 109.45184 * 178.49800 * 12 11 10 14 14 C 1.36933 * 119.99539 * 60.05818 * 13 12 11 15 15 H 1.07999 * 120.00341 * 14.34095 * 14 13 12 16 16 C 1.38814 * 119.99698 * 194.33905 * 14 13 12 17 17 N 1.31625 * 119.99997 * 25.67991 * 16 14 13 18 18 Si 1.86795 * 120.00129 * 205.68274 * 16 14 13 19 19 H 1.48504 * 109.47329 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47390 * 119.99796 * 18 16 14 21 21 H 1.48500 * 109.47527 * 239.99687 * 18 16 14 22 22 C 1.46495 * 119.99806 * 240.05748 * 13 12 11 23 23 C 1.53000 * 109.46972 * 81.30696 * 22 13 12 24 24 C 1.53002 * 117.50010 * 243.62141 * 23 22 13 25 25 C 1.52999 * 117.50382 * 174.99716 * 23 22 13 26 26 C 1.53041 * 109.53913 * 298.50698 * 12 11 10 27 27 C 1.46924 * 120.63298 * 190.93757 * 9 7 6 28 28 N 1.32098 * 120.41517 * 180.02562 * 2 1 3 29 29 H 1.09007 * 109.47388 * 89.99510 * 1 2 3 30 30 H 1.09001 * 109.47464 * 209.99870 * 1 2 3 31 31 H 1.08998 * 109.47116 * 329.99952 * 1 2 3 32 32 H 1.07999 * 120.74444 * 359.97438 * 3 2 1 33 33 H 1.07997 * 120.41483 * 180.02562 * 4 3 2 34 34 H 1.09000 * 109.59237 * 246.20691 * 10 9 7 35 35 H 1.09009 * 109.58512 * 6.62948 * 10 9 7 36 36 H 1.09001 * 109.63614 * 294.86444 * 11 10 9 37 37 H 1.09000 * 109.43456 * 174.72505 * 11 10 9 38 38 H 1.08999 * 109.46683 * 58.53203 * 12 11 10 39 39 H 0.96994 * 119.99785 * 180.02562 * 17 16 14 40 40 H 1.08999 * 109.46933 * 201.30210 * 22 13 12 41 41 H 1.08996 * 109.47277 * 321.30849 * 22 13 12 42 42 H 1.09005 * 115.55396 * 29.32560 * 23 22 13 43 43 H 1.09002 * 117.49627 * 359.97438 * 24 23 22 44 44 H 1.08998 * 117.50472 * 145.01904 * 24 23 22 45 45 H 1.08999 * 117.50284 * 214.98252 * 25 23 22 46 46 H 1.09003 * 117.49535 * 359.97438 * 25 23 22 47 47 H 1.08995 * 109.50299 * 301.41897 * 26 12 11 48 48 H 1.09001 * 109.50146 * 181.31237 * 26 12 11 49 49 H 1.08997 * 109.58846 * 353.36620 * 27 9 7 50 50 H 1.08995 * 109.59062 * 113.65110 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1971 0.0000 4 6 3.5970 1.1508 -0.0005 5 7 4.2020 -0.0238 -0.0016 6 6 3.5005 -1.1473 -0.0026 7 6 4.2169 -2.4484 -0.0101 8 8 3.5999 -3.4805 -0.1826 9 7 5.5514 -2.4841 0.1747 10 6 6.2786 -1.2852 0.6136 11 6 7.0980 -1.6410 1.8634 12 6 7.9951 -2.8414 1.5534 13 7 8.8050 -3.1623 2.7314 14 6 8.1953 -3.5014 3.9096 15 1 7.1464 -3.7584 3.9205 16 6 8.9254 -3.5147 5.0902 17 7 9.9963 -2.7589 5.2103 18 14 8.3882 -4.6053 6.5083 19 1 7.1634 -5.3513 6.1228 20 1 9.4722 -5.5678 6.8309 21 1 8.1023 -3.7647 7.6987 22 6 10.2670 -3.1205 2.6486 23 6 10.7450 -1.6746 2.7962 24 6 11.4649 -1.0432 1.6028 25 6 12.2545 -1.4318 2.8544 26 6 7.1275 -4.0478 1.1873 27 6 6.3076 -3.7208 -0.0649 28 7 2.1757 -1.1392 -0.0005 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6891 2.1432 -0.0004 33 1 4.1745 2.0633 -0.0001 34 1 6.9457 -0.9510 -0.1811 35 1 5.5680 -0.4942 0.8537 36 1 6.4251 -1.8918 2.6834 37 1 7.7157 -0.7888 2.1468 38 1 8.6508 -2.5985 0.7172 39 1 10.5067 -2.7685 6.0350 40 1 10.6937 -3.7274 3.4471 41 1 10.5877 -3.5124 1.6834 42 1 10.1077 -1.0279 3.3994 43 1 11.5984 -1.6581 0.7128 44 1 11.3013 0.0190 1.4207 45 1 12.6102 -0.6254 3.4957 46 1 12.9071 -2.3024 2.7880 47 1 6.4543 -4.2760 2.0135 48 1 7.7662 -4.9086 0.9893 49 1 5.6163 -4.5374 -0.2724 50 1 6.9751 -3.5820 -0.9153 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269621664.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:21 Heat of formation + Delta-G solvation = 90.449034 kcal Electronic energy + Delta-G solvation = -30951.716305 eV Core-core repulsion = 26981.821830 eV Total energy + Delta-G solvation = -3969.894475 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.57554 -39.54688 -37.61729 -36.42032 -35.05558 -34.34280 -32.93691 -32.02284 -30.63763 -29.80918 -28.83145 -26.37639 -25.82301 -24.37777 -23.40663 -22.67760 -22.06421 -21.50015 -20.43094 -19.37403 -19.12675 -17.99426 -17.23780 -16.44777 -16.27095 -15.80145 -15.74702 -15.19654 -14.82068 -14.53933 -14.35045 -13.85011 -13.77892 -13.57960 -13.52051 -13.38992 -13.35340 -12.95869 -12.82814 -12.69032 -12.14422 -11.96518 -11.61556 -11.30399 -11.15189 -10.92787 -10.88365 -10.69126 -10.64170 -10.60558 -10.58460 -10.27303 -9.97931 -9.91151 -9.86944 -9.78218 -9.67028 -9.27054 -8.97508 -8.76587 -8.35055 -8.26271 -6.80322 -5.74369 -3.04325 0.24314 0.75403 2.61074 2.75599 3.41127 3.51105 3.53698 3.61627 3.73693 3.92617 4.13442 4.53309 4.54924 4.68233 4.86694 4.90127 5.06730 5.15710 5.24466 5.37149 5.38370 5.40649 5.53619 5.62609 5.65986 5.74748 5.84567 5.88954 5.97127 5.99249 6.08343 6.11325 6.30211 6.32572 6.39360 6.47720 6.54698 6.56523 6.64589 6.70555 6.71933 6.88276 6.89507 7.08324 7.14633 7.29824 7.47198 7.52218 7.71442 7.73186 7.88692 8.22041 8.40034 9.26274 9.92007 10.38417 11.31695 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012385 B = 0.003084 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.255978 B = 9075.507503 C = 9775.630755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.171 3.829 3 C -0.214 4.214 4 C 0.142 3.858 5 N -0.485 5.485 6 C 0.297 3.703 7 C 0.580 3.420 8 O -0.515 6.515 9 N -0.580 5.580 10 C 0.082 3.918 11 C -0.138 4.138 12 C 0.180 3.820 13 N -0.588 5.588 14 C -0.248 4.248 15 H 0.071 0.929 16 C 0.002 3.998 17 N -0.888 5.888 18 Si 0.885 3.115 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.295 1.295 22 C 0.202 3.798 23 C -0.086 4.086 24 C -0.220 4.220 25 C -0.185 4.185 26 C -0.140 4.140 27 C 0.114 3.886 28 N -0.471 5.471 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.152 0.848 33 H 0.177 0.823 34 H 0.063 0.937 35 H 0.127 0.873 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.053 0.947 39 H 0.250 0.750 40 H 0.084 0.916 41 H 0.009 0.991 42 H 0.107 0.893 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.075 0.925 46 H 0.077 0.923 47 H 0.069 0.931 48 H 0.070 0.930 49 H 0.086 0.914 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.967 10.266 -12.371 19.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.024 3.976 3 C -0.236 4.236 4 C -0.023 4.023 5 N -0.202 5.202 6 C 0.027 3.973 7 C 0.362 3.638 8 O -0.389 6.389 9 N -0.313 5.313 10 C -0.040 4.040 11 C -0.178 4.178 12 C 0.072 3.928 13 N -0.307 5.307 14 C -0.377 4.377 15 H 0.088 0.912 16 C -0.196 4.196 17 N -0.533 5.533 18 Si 0.716 3.284 19 H -0.205 1.205 20 H -0.218 1.218 21 H -0.222 1.222 22 C 0.076 3.924 23 C -0.106 4.106 24 C -0.258 4.258 25 C -0.222 4.222 26 C -0.180 4.180 27 C -0.008 4.008 28 N -0.187 5.187 29 H 0.106 0.894 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.170 0.830 33 H 0.194 0.806 34 H 0.081 0.919 35 H 0.144 0.856 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.102 0.898 41 H 0.027 0.973 42 H 0.125 0.875 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.094 0.906 46 H 0.096 0.904 47 H 0.087 0.913 48 H 0.089 0.911 49 H 0.104 0.896 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -10.704 8.787 -12.315 18.532 hybrid contribution -0.390 0.635 1.028 1.270 sum -11.094 9.422 -11.287 18.418 Atomic orbital electron populations 1.20816 0.87306 1.04407 1.03901 1.21895 0.97978 0.87840 0.89886 1.22985 0.96668 1.00626 1.03275 1.23504 0.92322 0.96546 0.89948 1.68662 1.39416 0.98932 1.13216 1.23059 0.87342 0.93166 0.93753 1.17285 0.82094 0.85691 0.78682 1.90773 1.66292 1.32537 1.49295 1.47938 1.05388 1.13581 1.64376 1.22974 0.96968 0.87210 0.96851 1.22484 0.98794 1.00203 0.96299 1.20228 0.91204 0.91258 0.90093 1.44177 1.00658 1.78852 1.06990 1.19109 0.95270 1.38604 0.84739 0.91153 1.24696 0.98488 0.99574 0.96822 1.70223 1.19978 1.37119 1.25935 0.86484 0.77897 0.81270 0.82778 1.20541 1.21770 1.22209 1.20316 0.82909 0.92356 0.96810 1.23002 0.92096 1.00259 0.95261 1.23077 1.09664 0.99966 0.93061 1.22620 0.97440 1.02010 1.00169 1.22381 0.98987 1.00394 0.96250 1.21785 0.94675 0.85888 0.98446 1.68128 1.08587 1.30401 1.11566 0.89445 0.89548 0.89865 0.83032 0.80567 0.91905 0.85607 0.91725 0.91119 0.92885 0.93976 0.89781 0.97317 0.87490 0.90521 0.90832 0.90628 0.90444 0.91276 0.91095 0.89600 0.91551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.69 10.22 36.00 0.37 -0.32 16 2 C 0.17 1.73 6.82 -82.26 -0.56 1.17 16 3 C -0.21 -1.62 9.87 -39.16 -0.39 -2.00 16 4 C 0.14 1.23 11.30 -17.22 -0.19 1.04 16 5 N -0.48 -6.10 6.24 -11.12 -0.07 -6.17 16 6 C 0.30 4.52 7.40 -157.07 -1.16 3.35 16 7 C 0.58 10.14 7.68 -12.01 -0.09 10.05 16 8 O -0.52 -10.40 16.33 5.39 0.09 -10.31 16 9 N -0.58 -9.41 2.97 -173.36 -0.51 -9.92 16 10 C 0.08 1.24 5.81 -3.49 -0.02 1.22 16 11 C -0.14 -2.49 5.32 -26.39 -0.14 -2.63 16 12 C 0.18 3.44 2.57 -67.89 -0.17 3.26 16 13 N -0.59 -13.42 2.48 -165.62 -0.41 -13.83 16 14 C -0.25 -6.37 8.40 -15.06 -0.13 -6.50 16 15 H 0.07 1.86 6.93 -52.49 -0.36 1.49 16 16 C 0.00 0.06 4.78 -17.43 -0.08 -0.02 16 17 N -0.89 -23.92 9.57 55.49 0.53 -23.38 16 18 Si 0.89 21.43 29.62 -169.99 -5.04 16.40 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 22 C 0.20 4.54 5.06 -4.04 -0.02 4.52 16 23 C -0.09 -1.81 4.61 -90.62 -0.42 -2.23 16 24 C -0.22 -3.91 10.18 -26.73 -0.27 -4.18 16 25 C -0.18 -3.50 10.25 -26.73 -0.27 -3.77 16 26 C -0.14 -2.50 5.31 -26.61 -0.14 -2.64 16 27 C 0.11 1.79 6.44 -3.71 -0.02 1.76 16 28 N -0.47 -6.85 10.08 -7.37 -0.07 -6.93 16 29 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.32 8.10 -51.93 -0.42 -0.10 16 32 H 0.15 0.56 8.06 -52.49 -0.42 0.14 16 33 H 0.18 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.13 1.83 4.24 -75.62 -0.32 1.51 16 36 H 0.06 1.34 7.64 -51.93 -0.40 0.94 16 37 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.05 0.97 7.90 -51.93 -0.41 0.56 16 39 H 0.25 6.70 8.31 -40.82 -0.34 6.36 16 40 H 0.08 2.15 6.14 -51.93 -0.32 1.83 16 41 H 0.01 0.18 7.84 -51.93 -0.41 -0.22 16 42 H 0.11 2.63 7.74 -51.93 -0.40 2.23 16 43 H 0.08 1.28 8.03 -51.93 -0.42 0.87 16 44 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 45 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 46 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 47 H 0.07 1.41 7.09 -51.93 -0.37 1.04 16 48 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 49 H 0.09 1.38 7.02 -51.93 -0.36 1.02 16 50 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 LS Contribution 397.00 15.07 5.98 5.98 Total: -1.00 -31.11 397.00 -11.20 -42.31 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -7.97 Total: 3.78 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -3.72 Total: 2.07 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: -0.54 Total: -60.23 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.09 Total: -10.31 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.04 Total: 16.40 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -31.11 -11.20 -42.31 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269621664.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.763 kcal (2) G-P(sol) polarization free energy of solvation -31.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds