Wall clock time and date at job start Wed Apr 1 2020 03:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38822 * 120.42185 * 2 1 4 4 C 1.38781 * 118.50885 * 180.02562 * 3 2 1 5 5 N 1.32127 * 119.16527 * 0.02562 * 4 3 2 6 6 C 1.32452 * 120.76678 * 0.02562 * 5 4 3 7 7 C 1.48533 * 119.18109 * 179.71852 * 6 5 4 8 8 O 1.21469 * 119.99968 * 189.38263 * 7 6 5 9 9 N 1.34776 * 120.00390 * 9.39036 * 7 6 5 10 10 C 1.46925 * 120.63037 * 10.65150 * 9 7 6 11 11 C 1.53620 * 108.54369 * 126.37094 * 10 9 7 12 12 C 1.53033 * 109.24159 * 54.86046 * 11 10 9 13 13 N 1.46511 * 109.45184 * 178.49800 * 12 11 10 14 14 C 1.36933 * 119.99539 * 60.05818 * 13 12 11 15 15 H 1.07999 * 120.00341 * 14.34095 * 14 13 12 16 16 C 1.38814 * 119.99698 * 194.33905 * 14 13 12 17 17 N 1.31625 * 119.99997 * 25.67991 * 16 14 13 18 18 Si 1.86795 * 120.00129 * 205.68274 * 16 14 13 19 19 H 1.48504 * 109.47329 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47390 * 119.99796 * 18 16 14 21 21 H 1.48500 * 109.47527 * 239.99687 * 18 16 14 22 22 C 1.46495 * 119.99806 * 240.05748 * 13 12 11 23 23 C 1.53000 * 109.46972 * 81.30696 * 22 13 12 24 24 C 1.53002 * 117.50010 * 243.62141 * 23 22 13 25 25 C 1.52999 * 117.50382 * 174.99716 * 23 22 13 26 26 C 1.53041 * 109.53913 * 298.50698 * 12 11 10 27 27 C 1.46924 * 120.63298 * 190.93757 * 9 7 6 28 28 N 1.32098 * 120.41517 * 180.02562 * 2 1 3 29 29 H 1.09007 * 109.47388 * 89.99510 * 1 2 3 30 30 H 1.09001 * 109.47464 * 209.99870 * 1 2 3 31 31 H 1.08998 * 109.47116 * 329.99952 * 1 2 3 32 32 H 1.07999 * 120.74444 * 359.97438 * 3 2 1 33 33 H 1.07997 * 120.41483 * 180.02562 * 4 3 2 34 34 H 1.09000 * 109.59237 * 246.20691 * 10 9 7 35 35 H 1.09009 * 109.58512 * 6.62948 * 10 9 7 36 36 H 1.09001 * 109.63614 * 294.86444 * 11 10 9 37 37 H 1.09000 * 109.43456 * 174.72505 * 11 10 9 38 38 H 1.08999 * 109.46683 * 58.53203 * 12 11 10 39 39 H 0.96994 * 119.99785 * 180.02562 * 17 16 14 40 40 H 1.08999 * 109.46933 * 201.30210 * 22 13 12 41 41 H 1.08996 * 109.47277 * 321.30849 * 22 13 12 42 42 H 1.09005 * 115.55396 * 29.32560 * 23 22 13 43 43 H 1.09002 * 117.49627 * 359.97438 * 24 23 22 44 44 H 1.08998 * 117.50472 * 145.01904 * 24 23 22 45 45 H 1.08999 * 117.50284 * 214.98252 * 25 23 22 46 46 H 1.09003 * 117.49535 * 359.97438 * 25 23 22 47 47 H 1.08995 * 109.50299 * 301.41897 * 26 12 11 48 48 H 1.09001 * 109.50146 * 181.31237 * 26 12 11 49 49 H 1.08997 * 109.58846 * 353.36620 * 27 9 7 50 50 H 1.08995 * 109.59062 * 113.65110 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1971 0.0000 4 6 3.5970 1.1508 -0.0005 5 7 4.2020 -0.0238 -0.0016 6 6 3.5005 -1.1473 -0.0026 7 6 4.2169 -2.4484 -0.0101 8 8 3.5999 -3.4805 -0.1826 9 7 5.5514 -2.4841 0.1747 10 6 6.2786 -1.2852 0.6136 11 6 7.0980 -1.6410 1.8634 12 6 7.9951 -2.8414 1.5534 13 7 8.8050 -3.1623 2.7314 14 6 8.1953 -3.5014 3.9096 15 1 7.1464 -3.7584 3.9205 16 6 8.9254 -3.5147 5.0902 17 7 9.9963 -2.7589 5.2103 18 14 8.3882 -4.6053 6.5083 19 1 7.1634 -5.3513 6.1228 20 1 9.4722 -5.5678 6.8309 21 1 8.1023 -3.7647 7.6987 22 6 10.2670 -3.1205 2.6486 23 6 10.7450 -1.6746 2.7962 24 6 11.4649 -1.0432 1.6028 25 6 12.2545 -1.4318 2.8544 26 6 7.1275 -4.0478 1.1873 27 6 6.3076 -3.7208 -0.0649 28 7 2.1757 -1.1392 -0.0005 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6891 2.1432 -0.0004 33 1 4.1745 2.0633 -0.0001 34 1 6.9457 -0.9510 -0.1811 35 1 5.5680 -0.4942 0.8537 36 1 6.4251 -1.8918 2.6834 37 1 7.7157 -0.7888 2.1468 38 1 8.6508 -2.5985 0.7172 39 1 10.5067 -2.7685 6.0350 40 1 10.6937 -3.7274 3.4471 41 1 10.5877 -3.5124 1.6834 42 1 10.1077 -1.0279 3.3994 43 1 11.5984 -1.6581 0.7128 44 1 11.3013 0.0190 1.4207 45 1 12.6102 -0.6254 3.4957 46 1 12.9071 -2.3024 2.7880 47 1 6.4543 -4.2760 2.0135 48 1 7.7662 -4.9086 0.9893 49 1 5.6163 -4.5374 -0.2724 50 1 6.9751 -3.5820 -0.9153 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269621664.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:28:20 Heat of formation + Delta-G solvation = 73.513761 kcal Electronic energy + Delta-G solvation = -30952.450673 eV Core-core repulsion = 26981.821830 eV Total energy + Delta-G solvation = -3970.628844 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -42.47843 -40.79857 -39.17793 -37.91863 -36.28290 -35.56551 -33.93616 -33.58443 -31.97670 -31.49167 -29.50901 -27.98528 -27.26271 -25.75251 -24.25851 -23.97792 -23.54805 -22.96645 -21.82101 -21.06614 -20.52485 -18.91960 -18.52231 -17.98755 -17.42386 -16.90290 -16.88480 -16.76324 -16.12272 -15.70168 -15.60457 -15.49189 -15.21590 -15.08021 -14.83243 -14.50911 -14.45024 -14.17000 -13.86006 -13.64033 -13.31397 -13.22088 -13.17059 -13.13424 -12.68575 -12.53955 -12.32597 -12.24199 -12.15430 -12.10217 -12.00559 -11.78688 -11.70054 -11.50203 -11.30276 -10.99979 -10.77057 -10.57863 -10.51560 -10.17836 -9.98373 -9.67377 -8.68380 -7.76964 -5.05548 -0.62873 0.02933 1.42339 1.48553 1.48952 1.55387 1.63493 2.55879 2.69361 2.80442 3.05441 3.32354 3.35201 3.53607 3.60387 3.70225 4.02132 4.03424 4.21206 4.23543 4.30065 4.32900 4.42422 4.45603 4.48875 4.57115 4.59926 4.70433 4.71627 4.77948 4.82650 4.86322 4.90476 4.95265 4.99733 5.08625 5.14191 5.16755 5.21882 5.38749 5.44090 5.46391 5.54013 5.58960 5.65779 5.73759 5.82923 5.92162 5.98504 6.23149 6.42292 6.74770 7.01496 7.27454 8.02603 8.42441 9.26071 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.012385 B = 0.003084 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.255978 B = 9075.507503 C = 9775.630755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.149 3.851 3 C -0.184 4.184 4 C 0.134 3.866 5 N -0.496 5.496 6 C 0.266 3.734 7 C 0.573 3.427 8 O -0.558 6.558 9 N -0.582 5.582 10 C 0.095 3.905 11 C -0.125 4.125 12 C 0.178 3.822 13 N -0.598 5.598 14 C -0.243 4.243 15 H 0.055 0.945 16 C -0.039 4.039 17 N -0.901 5.901 18 Si 0.932 3.068 19 H -0.283 1.283 20 H -0.293 1.293 21 H -0.299 1.299 22 C 0.207 3.793 23 C -0.106 4.106 24 C -0.185 4.185 25 C -0.184 4.184 26 C -0.129 4.129 27 C 0.120 3.880 28 N -0.510 5.510 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.116 0.884 32 H 0.202 0.798 33 H 0.220 0.780 34 H 0.087 0.913 35 H 0.138 0.862 36 H 0.028 0.972 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.243 0.757 40 H 0.047 0.953 41 H 0.028 0.972 42 H 0.069 0.931 43 H 0.095 0.905 44 H 0.090 0.910 45 H 0.078 0.922 46 H 0.082 0.918 47 H 0.033 0.967 48 H 0.074 0.926 49 H 0.078 0.922 50 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.314 13.264 -14.536 22.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.004 3.996 3 C -0.205 4.205 4 C -0.029 4.029 5 N -0.214 5.214 6 C -0.003 4.003 7 C 0.357 3.643 8 O -0.435 6.435 9 N -0.313 5.313 10 C -0.027 4.027 11 C -0.165 4.165 12 C 0.071 3.929 13 N -0.318 5.318 14 C -0.373 4.373 15 H 0.073 0.927 16 C -0.236 4.236 17 N -0.547 5.547 18 Si 0.763 3.237 19 H -0.209 1.209 20 H -0.220 1.220 21 H -0.227 1.227 22 C 0.082 3.918 23 C -0.127 4.127 24 C -0.222 4.222 25 C -0.222 4.222 26 C -0.169 4.169 27 C -0.003 4.003 28 N -0.227 5.227 29 H 0.119 0.881 30 H 0.088 0.912 31 H 0.135 0.865 32 H 0.219 0.781 33 H 0.236 0.764 34 H 0.105 0.895 35 H 0.154 0.846 36 H 0.047 0.953 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.053 0.947 40 H 0.066 0.934 41 H 0.046 0.954 42 H 0.087 0.913 43 H 0.113 0.887 44 H 0.109 0.891 45 H 0.096 0.904 46 H 0.100 0.900 47 H 0.052 0.948 48 H 0.092 0.908 49 H 0.096 0.904 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -11.055 11.810 -14.497 21.722 hybrid contribution -0.383 -0.190 1.672 1.726 sum -11.438 11.619 -12.824 20.744 Atomic orbital electron populations 1.20943 0.84979 1.05228 1.04973 1.22618 0.99593 0.87724 0.89674 1.23515 0.96269 1.01523 0.99188 1.24304 0.93549 0.96360 0.88691 1.68451 1.39849 0.99451 1.13672 1.22450 0.87783 0.92832 0.97224 1.17771 0.82232 0.86549 0.77707 1.90724 1.67101 1.34339 1.51295 1.48026 1.05389 1.13898 1.64021 1.22976 0.96969 0.86992 0.95777 1.22299 0.98071 0.99373 0.96766 1.20414 0.91368 0.91892 0.89195 1.44305 1.01302 1.79089 1.07078 1.19104 0.94629 1.37603 0.85961 0.92716 1.25137 0.99211 1.00842 0.98384 1.70340 1.20613 1.37926 1.25774 0.85754 0.77156 0.79932 0.80866 1.20878 1.22025 1.22717 1.20172 0.82502 0.92894 0.96246 1.22537 0.93021 0.98956 0.98184 1.23108 1.05811 1.00942 0.92363 1.22670 0.95867 1.02343 1.01277 1.22226 0.98376 1.00101 0.96224 1.21749 0.94581 0.85926 0.98007 1.68040 1.08669 1.33192 1.12842 0.88115 0.91230 0.86512 0.78108 0.76352 0.89532 0.84576 0.95334 0.91839 0.90902 0.94723 0.93423 0.95423 0.91309 0.88665 0.89112 0.90375 0.89975 0.94762 0.90768 0.90357 0.88450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.10 10.22 71.23 0.73 -0.37 16 2 C 0.15 2.72 6.82 42.66 0.29 3.01 16 3 C -0.18 -2.01 9.87 22.54 0.22 -1.79 16 4 C 0.13 1.84 11.30 84.78 0.96 2.80 16 5 N -0.50 -11.61 6.24 -189.10 -1.18 -12.80 16 6 C 0.27 8.12 7.40 137.68 1.02 9.14 16 7 C 0.57 20.63 7.68 86.99 0.67 21.30 16 8 O -0.56 -23.69 16.33 -3.62 -0.06 -23.75 16 9 N -0.58 -18.89 2.97 -820.69 -2.43 -21.32 16 10 C 0.09 2.76 5.81 86.51 0.50 3.26 16 11 C -0.12 -4.57 5.32 30.81 0.16 -4.40 16 12 C 0.18 6.77 2.57 45.01 0.12 6.89 16 13 N -0.60 -27.84 2.48 -677.89 -1.68 -29.52 16 14 C -0.24 -12.95 8.40 84.03 0.71 -12.24 16 15 H 0.05 3.05 6.93 -2.91 -0.02 3.03 16 16 C -0.04 -2.15 4.78 84.86 0.41 -1.75 16 17 N -0.90 -50.04 9.57 21.65 0.21 -49.84 16 18 Si 0.93 45.63 29.62 68.60 2.03 47.66 16 19 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 20 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 21 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 22 C 0.21 9.36 5.06 86.38 0.44 9.80 16 23 C -0.11 -4.46 4.61 -10.79 -0.05 -4.51 16 24 C -0.19 -6.02 10.18 30.59 0.31 -5.71 16 25 C -0.18 -6.70 10.25 30.59 0.31 -6.39 16 26 C -0.13 -4.70 5.31 30.67 0.16 -4.54 16 27 C 0.12 3.71 6.44 86.37 0.56 4.27 16 28 N -0.51 -14.87 10.08 -177.24 -1.79 -16.66 16 29 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.12 0.42 8.10 -2.39 -0.02 0.40 16 32 H 0.20 0.17 8.06 -2.91 -0.02 0.14 16 33 H 0.22 0.99 8.06 -2.91 -0.02 0.96 16 34 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 35 H 0.14 3.81 4.24 -49.17 -0.21 3.60 16 36 H 0.03 1.22 7.64 -2.39 -0.02 1.21 16 37 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 38 H 0.07 2.50 7.90 -2.39 -0.02 2.48 16 39 H 0.24 13.43 8.31 -92.71 -0.77 12.66 16 40 H 0.05 2.49 6.14 -2.39 -0.01 2.47 16 41 H 0.03 1.12 7.84 -2.39 -0.02 1.11 16 42 H 0.07 3.44 7.74 -2.38 -0.02 3.42 16 43 H 0.09 2.78 8.03 -2.39 -0.02 2.76 16 44 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 45 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 46 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 47 H 0.03 1.46 7.09 -2.39 -0.02 1.45 16 48 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 49 H 0.08 2.58 7.02 -2.39 -0.02 2.56 16 50 H 0.10 2.45 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -73.82 397.00 3.35 -70.47 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: 0.74 Total: 16.96 kcal Atomic # 6 Polarization: 11.28 SS G_CDS: 7.51 Total: 18.79 kcal Atomic # 7 Polarization: -123.26 SS G_CDS: -6.87 Total: -130.13 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.06 Total: -23.75 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -73.82 3.35 -70.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269621664.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.987 kcal (2) G-P(sol) polarization free energy of solvation -73.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds