Wall clock time and date at job start Wed Apr 1 2020 04:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38395 * 120.00191 * 2 1 4 4 N 1.32118 * 119.99895 * 180.23483 * 3 2 1 5 5 C 1.32157 * 120.00111 * 359.48662 * 4 3 2 6 6 C 1.38342 * 120.00142 * 0.51357 * 5 4 3 7 7 C 1.50696 * 120.00017 * 179.76863 * 6 5 4 8 8 N 1.46899 * 109.47407 * 94.97634 * 7 6 5 9 9 C 1.48069 * 110.99888 * 290.42123 * 8 7 6 10 10 C 1.54974 * 104.82216 * 213.97260 * 9 8 7 11 11 C 1.55314 * 101.73777 * 36.66293 * 10 9 8 12 12 C 1.46654 * 111.00153 * 169.99888 * 8 7 6 13 13 C 1.53878 * 110.90538 * 2.14819 * 12 8 7 14 14 C 1.54642 * 101.59382 * 263.46050 * 13 12 8 15 15 N 1.46845 * 105.50573 * 335.23040 * 14 13 12 16 16 C 1.46495 * 124.37248 * 196.90107 * 15 14 13 17 17 C 1.53008 * 109.47027 * 269.95389 * 16 15 14 18 18 C 1.50697 * 109.47063 * 179.97438 * 17 16 15 19 19 H 1.08006 * 120.00117 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00099 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00023 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 119.99910 * 359.97438 * 20 18 17 23 23 H 1.48507 * 109.46814 * 90.00239 * 22 20 18 24 24 H 1.48494 * 109.47446 * 210.00125 * 22 20 18 25 25 H 1.48499 * 109.47268 * 330.00469 * 22 20 18 26 26 C 1.34658 * 111.26114 * 16.88316 * 15 14 13 27 27 O 1.21281 * 125.07727 * 179.14730 * 26 15 14 28 28 N 1.32124 * 120.00235 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.47249 * 90.00415 * 1 2 3 30 30 H 1.09009 * 109.47094 * 210.00314 * 1 2 3 31 31 H 1.08999 * 109.47481 * 330.00051 * 1 2 3 32 32 H 1.08002 * 119.99624 * 359.94968 * 3 2 1 33 33 H 1.07999 * 120.00025 * 180.25270 * 5 4 3 34 34 H 1.09007 * 109.47204 * 214.97546 * 7 6 5 35 35 H 1.08992 * 109.47171 * 334.97428 * 7 6 5 36 36 H 1.08999 * 110.37339 * 332.81168 * 9 8 7 37 37 H 1.09009 * 110.37151 * 95.13797 * 9 8 7 38 38 H 1.09003 * 110.97439 * 278.55089 * 10 9 8 39 39 H 1.08996 * 111.01232 * 154.79079 * 10 9 8 40 40 H 1.08999 * 110.74669 * 206.63438 * 11 10 9 41 41 H 1.09002 * 110.74383 * 83.28599 * 11 10 9 42 42 H 1.09008 * 111.00310 * 21.53744 * 13 12 8 43 43 H 1.09003 * 111.00294 * 145.37945 * 13 12 8 44 44 H 1.09001 * 110.23865 * 216.22132 * 14 13 12 45 45 H 1.09001 * 110.23785 * 94.23989 * 14 13 12 46 46 H 1.09005 * 109.47131 * 29.94923 * 16 15 14 47 47 H 1.08996 * 109.47580 * 149.95414 * 16 15 14 48 48 H 1.08997 * 109.46951 * 300.00093 * 17 16 15 49 49 H 1.08996 * 109.46921 * 59.99621 * 17 16 15 50 50 H 0.97005 * 119.99664 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1989 1.1985 0.0000 4 7 3.5201 1.1985 -0.0047 5 6 4.1809 0.0539 0.0009 6 6 3.4892 -1.1442 0.0009 7 6 4.2427 -2.4492 0.0019 8 7 4.3826 -2.9328 1.3820 9 6 5.3111 -2.0752 2.1532 10 6 6.0290 -3.0438 3.1270 11 6 6.1812 -4.3172 2.2510 12 6 4.8972 -4.3059 1.4081 13 6 5.1873 -4.8107 -0.0162 14 6 3.8927 -5.5927 -0.3385 15 7 3.3380 -5.9869 0.9627 16 6 2.3255 -7.0292 1.1487 17 6 0.9307 -6.4054 1.0691 18 6 -0.1108 -7.4777 1.2597 19 1 0.1918 -8.5017 1.4219 20 6 -1.4501 -7.1514 1.2282 21 7 -2.3589 -8.0871 1.3950 22 14 -1.9735 -5.3799 0.9498 23 1 -2.1341 -5.1342 -0.5060 24 1 -3.2649 -5.1311 1.6392 25 1 -0.9374 -4.4662 1.4946 26 6 3.8803 -5.2669 1.9631 27 8 3.5925 -5.3765 3.1362 28 7 2.1676 -1.1442 0.0005 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6589 2.1338 -0.0008 33 1 5.2609 0.0539 0.0012 34 1 3.6956 -3.1852 -0.5873 35 1 5.2311 -2.2984 -0.4321 36 1 6.0330 -1.6027 1.4872 37 1 4.7562 -1.3199 2.7099 38 1 5.4124 -3.2443 4.0031 39 1 7.0035 -2.6527 3.4195 40 1 6.2267 -5.2109 2.8734 41 1 7.0623 -4.2442 1.6134 42 1 5.3225 -3.9776 -0.7061 43 1 6.0552 -5.4701 -0.0278 44 1 4.1241 -6.4764 -0.9332 45 1 3.1884 -4.9531 -0.8705 46 1 2.4317 -7.7824 0.3678 47 1 2.4595 -7.4961 2.1244 48 1 0.8245 -5.6522 1.8498 49 1 0.7967 -5.9385 0.0933 50 1 -3.3012 -7.8576 1.3725 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272562841.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:28 Heat of formation + Delta-G solvation = 38.708812 kcal Electronic energy + Delta-G solvation = -31530.287662 eV Core-core repulsion = 27558.149563 eV Total energy + Delta-G solvation = -3972.138099 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.64357 -40.96335 -37.99277 -36.03251 -34.73481 -34.20889 -33.61574 -32.00982 -31.50552 -29.55682 -28.45202 -27.84101 -26.69603 -25.22485 -23.87770 -23.41019 -22.56618 -21.81736 -20.97825 -19.96871 -18.70500 -17.86800 -17.23456 -17.08328 -16.81823 -16.29201 -15.54863 -15.32565 -15.20292 -14.95802 -14.51305 -14.21363 -13.94040 -13.75740 -13.58550 -13.38261 -13.09893 -13.05842 -12.83159 -12.80425 -12.62731 -12.55675 -12.40480 -12.04317 -11.94579 -11.66090 -11.57979 -11.43493 -11.18416 -11.16317 -11.01398 -10.96886 -10.86849 -10.39418 -9.95487 -9.83019 -9.55683 -9.31345 -9.21870 -9.17057 -8.50229 -8.42014 -8.09558 -6.01714 -4.00172 0.52509 0.97059 2.77907 3.35297 3.40062 3.42504 3.48754 3.54205 3.69715 3.96478 4.02829 4.11920 4.19497 4.32640 4.49391 4.50962 4.53288 4.67602 4.75820 4.81798 4.94686 4.97973 5.01816 5.08847 5.11622 5.24892 5.33369 5.35357 5.39423 5.40004 5.50928 5.55380 5.60297 5.66365 5.71700 5.82659 5.85645 5.87863 5.99780 6.11153 6.17662 6.35942 6.65020 6.65568 6.69607 6.91983 7.11607 7.25214 7.45515 7.64909 7.69437 7.81711 8.52339 8.67381 9.01313 9.61137 11.11301 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008376 B = 0.004708 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3342.000670 B = 5945.912511 C = 8468.867952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.089 3.911 3 C 0.042 3.958 4 N -0.435 5.435 5 C 0.042 3.958 6 C 0.099 3.901 7 C 0.095 3.905 8 N -0.495 5.495 9 C 0.043 3.957 10 C -0.127 4.127 11 C -0.118 4.118 12 C 0.072 3.928 13 C -0.162 4.162 14 C 0.103 3.897 15 N -0.612 5.612 16 C 0.139 3.861 17 C -0.023 4.023 18 C -0.520 4.520 19 H 0.073 0.927 20 C 0.071 3.929 21 N -0.903 5.903 22 Si 0.876 3.124 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.261 1.261 26 C 0.539 3.461 27 O -0.519 6.519 28 N -0.416 5.416 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.080 0.920 32 H 0.168 0.832 33 H 0.164 0.836 34 H 0.106 0.894 35 H 0.064 0.936 36 H 0.051 0.949 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.099 0.901 43 H 0.090 0.910 44 H 0.079 0.921 45 H 0.070 0.930 46 H 0.070 0.930 47 H 0.076 0.924 48 H 0.022 0.978 49 H 0.012 0.988 50 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.989 17.295 -6.290 26.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.052 4.052 3 C -0.118 4.118 4 N -0.148 5.148 5 C -0.118 4.118 6 C -0.042 4.042 7 C -0.033 4.033 8 N -0.219 5.219 9 C -0.084 4.084 10 C -0.165 4.165 11 C -0.156 4.156 12 C -0.022 4.022 13 C -0.201 4.201 14 C -0.021 4.021 15 N -0.345 5.345 16 C 0.019 3.981 17 C -0.061 4.061 18 C -0.558 4.558 19 H 0.091 0.909 20 C -0.131 4.131 21 N -0.541 5.541 22 Si 0.704 3.296 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.186 1.186 26 C 0.324 3.676 27 O -0.394 6.394 28 N -0.132 5.132 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.099 0.901 32 H 0.185 0.815 33 H 0.181 0.819 34 H 0.124 0.876 35 H 0.082 0.918 36 H 0.069 0.931 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.101 0.899 41 H 0.095 0.905 42 H 0.117 0.883 43 H 0.108 0.892 44 H 0.098 0.902 45 H 0.089 0.911 46 H 0.089 0.911 47 H 0.094 0.906 48 H 0.040 0.960 49 H 0.030 0.970 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 18.076 17.140 -5.423 25.494 hybrid contribution 0.161 0.891 -0.648 1.114 sum 18.237 18.031 -6.071 26.355 Atomic orbital electron populations 1.20754 0.87629 1.04392 1.03663 1.22421 0.98673 0.89313 0.94799 1.23591 0.90833 0.99231 0.98151 1.68407 1.08873 1.29376 1.08167 1.23496 1.01438 0.88425 0.98475 1.22070 0.90737 0.96038 0.95384 1.21380 0.97757 0.92936 0.91267 1.63112 1.47512 0.99919 1.11403 1.23210 0.93454 0.96027 0.95758 1.22735 1.00564 0.94363 0.98799 1.22616 0.94983 1.00042 0.98003 1.21918 0.94600 0.89706 0.95932 1.23355 0.98832 1.01564 0.96325 1.22057 0.93804 0.99469 0.86735 1.48532 1.41052 1.38337 1.06620 1.21577 0.87106 0.87661 1.01782 1.19869 0.92048 0.97434 0.96744 1.20979 0.89910 0.95206 1.49747 0.90872 1.24950 0.96582 0.97106 0.94423 1.69910 1.00876 1.32849 1.50510 0.86806 0.78167 0.86203 0.78474 1.20337 1.21402 1.18582 1.20015 0.81475 0.80577 0.85566 1.90677 1.63766 1.68326 1.16610 1.68219 1.08170 1.29215 1.07611 0.89793 0.89636 0.90124 0.81497 0.81930 0.87587 0.91825 0.93122 0.90257 0.89768 0.90496 0.89852 0.90471 0.88300 0.89193 0.90249 0.91140 0.91133 0.90601 0.95966 0.96971 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.06 10.19 36.00 0.37 -0.70 16 2 C 0.09 1.07 6.79 -82.41 -0.56 0.52 16 3 C 0.04 0.44 10.88 -17.37 -0.19 0.25 16 4 N -0.43 -4.92 10.50 -13.06 -0.14 -5.06 16 5 C 0.04 0.43 10.37 -17.37 -0.18 0.25 16 6 C 0.10 1.20 5.92 -82.41 -0.49 0.71 16 7 C 0.09 1.02 3.75 -4.98 -0.02 1.00 16 8 N -0.49 -6.38 4.84 -218.86 -1.06 -7.44 16 9 C 0.04 0.44 5.83 -2.14 -0.01 0.43 16 10 C -0.13 -1.29 7.08 -24.46 -0.17 -1.46 16 11 C -0.12 -1.23 5.85 -25.19 -0.15 -1.38 16 12 C 0.07 0.92 0.99 -132.20 -0.13 0.79 16 13 C -0.16 -1.55 5.51 -25.41 -0.14 -1.69 16 14 C 0.10 1.31 6.99 -2.99 -0.02 1.29 16 15 N -0.61 -10.85 2.94 -172.50 -0.51 -11.35 16 16 C 0.14 2.90 5.88 -4.04 -0.02 2.88 16 17 C -0.02 -0.57 4.37 -27.88 -0.12 -0.69 16 18 C -0.52 -15.25 9.66 -34.44 -0.33 -15.58 16 19 H 0.07 2.26 7.99 -52.48 -0.42 1.84 16 20 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 21 N -0.90 -28.41 13.96 55.43 0.77 -27.64 16 22 Si 0.88 22.79 27.47 -169.99 -4.67 18.12 16 23 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 25 H -0.26 -6.85 6.54 56.52 0.37 -6.48 16 26 C 0.54 9.91 6.97 -11.12 -0.08 9.83 16 27 O -0.52 -11.78 17.44 5.56 0.10 -11.68 16 28 N -0.42 -6.07 10.35 -5.56 -0.06 -6.12 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 1.05 8.14 -51.92 -0.42 0.63 16 31 H 0.08 0.58 8.09 -51.93 -0.42 0.16 16 32 H 0.17 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.16 1.17 7.89 -52.49 -0.41 0.76 16 34 H 0.11 1.24 5.05 -51.92 -0.26 0.98 16 35 H 0.06 0.46 6.71 -51.93 -0.35 0.11 16 36 H 0.05 0.38 7.43 -51.93 -0.39 0.00 16 37 H 0.08 0.91 8.14 -51.92 -0.42 0.49 16 38 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.99 7.79 -51.93 -0.40 0.58 16 41 H 0.08 0.58 7.81 -51.93 -0.41 0.18 16 42 H 0.10 0.72 4.85 -51.92 -0.25 0.46 16 43 H 0.09 0.69 7.83 -51.93 -0.41 0.29 16 44 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.07 0.92 6.76 -51.93 -0.35 0.57 16 46 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 47 H 0.08 1.69 7.95 -51.93 -0.41 1.28 16 48 H 0.02 0.62 7.20 -51.93 -0.37 0.24 16 49 H 0.01 0.30 7.57 -51.93 -0.39 -0.09 16 50 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 LS Contribution 395.02 15.07 5.95 5.95 Total: -1.00 -37.93 395.02 -9.75 -47.69 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -7.80 Total: -0.93 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -2.35 Total: -1.53 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: -0.99 Total: -57.62 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.10 Total: -11.68 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -4.67 Total: 18.12 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.93 -9.75 -47.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272562841.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.395 kcal (2) G-P(sol) polarization free energy of solvation -37.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.686 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds