Wall clock time and date at job start Wed Apr 1 2020 04:13:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38395 * 120.00191 * 2 1 4 4 N 1.32118 * 119.99895 * 180.23483 * 3 2 1 5 5 C 1.32157 * 120.00111 * 359.48662 * 4 3 2 6 6 C 1.38342 * 120.00142 * 0.51357 * 5 4 3 7 7 C 1.50696 * 120.00017 * 179.76863 * 6 5 4 8 8 N 1.46899 * 109.47407 * 94.97634 * 7 6 5 9 9 C 1.48069 * 110.99888 * 290.42123 * 8 7 6 10 10 C 1.54974 * 104.82216 * 213.97260 * 9 8 7 11 11 C 1.55314 * 101.73777 * 36.66293 * 10 9 8 12 12 C 1.46654 * 111.00153 * 169.99888 * 8 7 6 13 13 C 1.53878 * 110.90538 * 2.14819 * 12 8 7 14 14 C 1.54642 * 101.59382 * 263.46050 * 13 12 8 15 15 N 1.46845 * 105.50573 * 335.23040 * 14 13 12 16 16 C 1.46495 * 124.37248 * 196.90107 * 15 14 13 17 17 C 1.53008 * 109.47027 * 269.95389 * 16 15 14 18 18 C 1.50697 * 109.47063 * 179.97438 * 17 16 15 19 19 H 1.08006 * 120.00117 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00099 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00023 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 119.99910 * 359.97438 * 20 18 17 23 23 H 1.48507 * 109.46814 * 90.00239 * 22 20 18 24 24 H 1.48494 * 109.47446 * 210.00125 * 22 20 18 25 25 H 1.48499 * 109.47268 * 330.00469 * 22 20 18 26 26 C 1.34658 * 111.26114 * 16.88316 * 15 14 13 27 27 O 1.21281 * 125.07727 * 179.14730 * 26 15 14 28 28 N 1.32124 * 120.00235 * 179.97438 * 2 1 3 29 29 H 1.08996 * 109.47249 * 90.00415 * 1 2 3 30 30 H 1.09009 * 109.47094 * 210.00314 * 1 2 3 31 31 H 1.08999 * 109.47481 * 330.00051 * 1 2 3 32 32 H 1.08002 * 119.99624 * 359.94968 * 3 2 1 33 33 H 1.07999 * 120.00025 * 180.25270 * 5 4 3 34 34 H 1.09007 * 109.47204 * 214.97546 * 7 6 5 35 35 H 1.08992 * 109.47171 * 334.97428 * 7 6 5 36 36 H 1.08999 * 110.37339 * 332.81168 * 9 8 7 37 37 H 1.09009 * 110.37151 * 95.13797 * 9 8 7 38 38 H 1.09003 * 110.97439 * 278.55089 * 10 9 8 39 39 H 1.08996 * 111.01232 * 154.79079 * 10 9 8 40 40 H 1.08999 * 110.74669 * 206.63438 * 11 10 9 41 41 H 1.09002 * 110.74383 * 83.28599 * 11 10 9 42 42 H 1.09008 * 111.00310 * 21.53744 * 13 12 8 43 43 H 1.09003 * 111.00294 * 145.37945 * 13 12 8 44 44 H 1.09001 * 110.23865 * 216.22132 * 14 13 12 45 45 H 1.09001 * 110.23785 * 94.23989 * 14 13 12 46 46 H 1.09005 * 109.47131 * 29.94923 * 16 15 14 47 47 H 1.08996 * 109.47580 * 149.95414 * 16 15 14 48 48 H 1.08997 * 109.46951 * 300.00093 * 17 16 15 49 49 H 1.08996 * 109.46921 * 59.99621 * 17 16 15 50 50 H 0.97005 * 119.99664 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1989 1.1985 0.0000 4 7 3.5201 1.1985 -0.0047 5 6 4.1809 0.0539 0.0009 6 6 3.4892 -1.1442 0.0009 7 6 4.2427 -2.4492 0.0019 8 7 4.3826 -2.9328 1.3820 9 6 5.3111 -2.0752 2.1532 10 6 6.0290 -3.0438 3.1270 11 6 6.1812 -4.3172 2.2510 12 6 4.8972 -4.3059 1.4081 13 6 5.1873 -4.8107 -0.0162 14 6 3.8927 -5.5927 -0.3385 15 7 3.3380 -5.9869 0.9627 16 6 2.3255 -7.0292 1.1487 17 6 0.9307 -6.4054 1.0691 18 6 -0.1108 -7.4777 1.2597 19 1 0.1918 -8.5017 1.4219 20 6 -1.4501 -7.1514 1.2282 21 7 -2.3589 -8.0871 1.3950 22 14 -1.9735 -5.3799 0.9498 23 1 -2.1341 -5.1342 -0.5060 24 1 -3.2649 -5.1311 1.6392 25 1 -0.9374 -4.4662 1.4946 26 6 3.8803 -5.2669 1.9631 27 8 3.5925 -5.3765 3.1362 28 7 2.1676 -1.1442 0.0005 29 1 -0.3633 -0.0001 -1.0276 30 1 -0.3634 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.6589 2.1338 -0.0008 33 1 5.2609 0.0539 0.0012 34 1 3.6956 -3.1852 -0.5873 35 1 5.2311 -2.2984 -0.4321 36 1 6.0330 -1.6027 1.4872 37 1 4.7562 -1.3199 2.7099 38 1 5.4124 -3.2443 4.0031 39 1 7.0035 -2.6527 3.4195 40 1 6.2267 -5.2109 2.8734 41 1 7.0623 -4.2442 1.6134 42 1 5.3225 -3.9776 -0.7061 43 1 6.0552 -5.4701 -0.0278 44 1 4.1241 -6.4764 -0.9332 45 1 3.1884 -4.9531 -0.8705 46 1 2.4317 -7.7824 0.3678 47 1 2.4595 -7.4961 2.1244 48 1 0.8245 -5.6522 1.8498 49 1 0.7967 -5.9385 0.0933 50 1 -3.3012 -7.8576 1.3725 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272562841.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:27 Heat of formation + Delta-G solvation = 9.526327 kcal Electronic energy + Delta-G solvation = -31531.553110 eV Core-core repulsion = 27558.149563 eV Total energy + Delta-G solvation = -3973.403547 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.56074 -41.90453 -39.17284 -37.45358 -35.59374 -35.53781 -34.98171 -33.74089 -32.39363 -31.15850 -29.27746 -28.81119 -27.61811 -26.91977 -24.80551 -24.31284 -23.57877 -23.12657 -22.18424 -21.21712 -19.92970 -19.10617 -18.69063 -18.12695 -17.80167 -17.33893 -16.85898 -16.60729 -16.14255 -16.08138 -15.84509 -15.68684 -15.01937 -14.94543 -14.72323 -14.65050 -14.45737 -14.30550 -13.96045 -13.83110 -13.72024 -13.57803 -13.32200 -13.30653 -12.98863 -12.88261 -12.77450 -12.56874 -12.46302 -12.22970 -12.06327 -12.03211 -11.95329 -11.84515 -11.75608 -11.71385 -11.55001 -10.86405 -10.82698 -10.07855 -10.01766 -9.59985 -9.30447 -8.38420 -6.42269 -0.25033 0.14479 1.23636 1.27729 1.42692 1.52096 2.13192 2.27790 2.57679 2.95402 2.96466 3.08306 3.27133 3.32919 3.33884 3.50035 3.70796 3.74323 3.86435 3.96670 4.01950 4.20338 4.21594 4.24754 4.26596 4.29758 4.42059 4.47347 4.52746 4.58330 4.65151 4.67482 4.73361 4.74820 4.79807 4.81414 4.89552 4.97978 5.02657 5.06052 5.09731 5.13891 5.23652 5.31296 5.42149 5.46440 5.70794 5.83776 5.97866 6.16501 6.31059 6.34202 6.63486 6.85501 7.21771 7.27494 8.77838 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.008376 B = 0.004708 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3342.000670 B = 5945.912511 C = 8468.867952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.067 3.933 3 C 0.047 3.953 4 N -0.450 5.450 5 C 0.051 3.949 6 C 0.084 3.916 7 C 0.096 3.904 8 N -0.533 5.533 9 C 0.048 3.952 10 C -0.126 4.126 11 C -0.112 4.112 12 C 0.079 3.921 13 C -0.143 4.143 14 C 0.091 3.909 15 N -0.619 5.619 16 C 0.148 3.852 17 C -0.008 4.008 18 C -0.532 4.532 19 H 0.044 0.956 20 C 0.017 3.983 21 N -0.941 5.941 22 Si 0.943 3.057 23 H -0.255 1.255 24 H -0.277 1.277 25 H -0.273 1.273 26 C 0.518 3.482 27 O -0.582 6.582 28 N -0.466 5.466 29 H 0.095 0.905 30 H 0.053 0.947 31 H 0.108 0.892 32 H 0.198 0.802 33 H 0.200 0.800 34 H 0.092 0.908 35 H 0.113 0.887 36 H 0.094 0.906 37 H 0.058 0.942 38 H 0.041 0.959 39 H 0.110 0.890 40 H 0.060 0.940 41 H 0.124 0.876 42 H 0.133 0.867 43 H 0.120 0.880 44 H 0.104 0.896 45 H 0.065 0.935 46 H 0.092 0.908 47 H 0.049 0.951 48 H -0.011 1.011 49 H 0.020 0.980 50 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.202 20.219 -8.977 31.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.073 4.073 3 C -0.113 4.113 4 N -0.163 5.163 5 C -0.109 4.109 6 C -0.057 4.057 7 C -0.032 4.032 8 N -0.259 5.259 9 C -0.078 4.078 10 C -0.164 4.164 11 C -0.150 4.150 12 C -0.014 4.014 13 C -0.180 4.180 14 C -0.030 4.030 15 N -0.351 5.351 16 C 0.026 3.974 17 C -0.047 4.047 18 C -0.570 4.570 19 H 0.063 0.937 20 C -0.181 4.181 21 N -0.581 5.581 22 Si 0.767 3.233 23 H -0.180 1.180 24 H -0.203 1.203 25 H -0.198 1.198 26 C 0.305 3.695 27 O -0.460 6.460 28 N -0.183 5.183 29 H 0.113 0.887 30 H 0.072 0.928 31 H 0.127 0.873 32 H 0.215 0.785 33 H 0.216 0.784 34 H 0.110 0.890 35 H 0.130 0.870 36 H 0.112 0.888 37 H 0.076 0.924 38 H 0.060 0.940 39 H 0.129 0.871 40 H 0.079 0.921 41 H 0.142 0.858 42 H 0.151 0.849 43 H 0.138 0.862 44 H 0.122 0.878 45 H 0.084 0.916 46 H 0.111 0.889 47 H 0.068 0.932 48 H 0.007 0.993 49 H 0.039 0.961 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 21.307 20.077 -8.160 30.392 hybrid contribution -0.899 -0.075 0.256 0.938 sum 20.407 20.002 -7.903 29.648 Atomic orbital electron populations 1.20798 0.86941 1.04130 1.04327 1.22732 0.99442 0.89552 0.95576 1.24003 0.90855 0.99728 0.96732 1.68500 1.09208 1.29864 1.08766 1.23989 1.02927 0.87404 0.96598 1.22394 0.90173 0.97388 0.95743 1.21496 0.99744 0.91902 0.90028 1.62817 1.49484 1.00252 1.13315 1.23203 0.93469 0.95174 0.95958 1.22721 1.01456 0.94782 0.97426 1.22671 0.95326 0.98982 0.98054 1.21767 0.93160 0.88515 0.97965 1.23436 0.97777 1.02530 0.94307 1.22440 0.95274 1.01020 0.84308 1.48642 1.40017 1.37331 1.09105 1.21147 0.86062 0.88867 1.01278 1.19662 0.93847 0.95503 0.95644 1.21281 0.91258 0.95021 1.49479 0.93734 1.25800 0.96678 1.01441 0.94170 1.70025 1.01494 1.35043 1.51578 0.85767 0.77553 0.80393 0.79574 1.17959 1.20267 1.19850 1.21337 0.82188 0.81076 0.84877 1.90622 1.66040 1.70065 1.19319 1.68162 1.10036 1.30947 1.09151 0.88669 0.92832 0.87333 0.78534 0.78360 0.88977 0.86987 0.88836 0.92371 0.93989 0.87138 0.92127 0.85776 0.84874 0.86190 0.87807 0.91640 0.88927 0.93207 0.99277 0.96125 0.92203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.04 10.19 71.23 0.73 -1.31 16 2 C 0.07 1.58 6.79 42.55 0.29 1.87 16 3 C 0.05 0.88 10.88 84.69 0.92 1.80 16 4 N -0.45 -8.93 10.50 -195.22 -2.05 -10.98 16 5 C 0.05 0.87 10.37 84.67 0.88 1.75 16 6 C 0.08 1.86 5.92 42.53 0.25 2.11 16 7 C 0.10 1.73 3.75 85.56 0.32 2.05 16 8 N -0.53 -12.68 4.84 -846.33 -4.10 -16.78 16 9 C 0.05 0.86 5.83 86.75 0.51 1.36 16 10 C -0.13 -2.33 7.08 32.06 0.23 -2.10 16 11 C -0.11 -2.02 5.85 31.59 0.18 -1.84 16 12 C 0.08 1.86 0.99 3.27 0.00 1.86 16 13 C -0.14 -2.08 5.51 31.45 0.17 -1.91 16 14 C 0.09 2.10 6.99 86.87 0.61 2.71 16 15 N -0.62 -22.12 2.94 -818.12 -2.41 -24.52 16 16 C 0.15 6.47 5.88 86.38 0.51 6.98 16 17 C -0.01 -0.43 4.37 29.85 0.13 -0.30 16 18 C -0.53 -32.59 9.66 25.60 0.25 -32.34 16 19 H 0.04 2.90 7.99 -2.91 -0.02 2.88 16 20 C 0.02 1.06 5.47 84.65 0.46 1.52 16 21 N -0.94 -60.83 13.96 21.45 0.30 -60.53 16 22 Si 0.94 48.42 27.47 68.60 1.88 50.31 16 23 H -0.26 -12.14 7.11 99.48 0.71 -11.43 16 24 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 25 H -0.27 -14.47 6.54 99.48 0.65 -13.82 16 26 C 0.52 19.54 6.97 87.62 0.61 20.15 16 27 O -0.58 -28.32 17.44 -3.03 -0.05 -28.37 16 28 N -0.47 -13.40 10.35 -171.51 -1.77 -15.17 16 29 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 31 H 0.11 1.41 8.09 -2.39 -0.02 1.39 16 32 H 0.20 2.24 8.06 -2.91 -0.02 2.22 16 33 H 0.20 1.76 7.89 -2.91 -0.02 1.74 16 34 H 0.09 1.91 5.05 -2.38 -0.01 1.90 16 35 H 0.11 0.88 6.71 -2.39 -0.02 0.86 16 36 H 0.09 0.86 7.43 -2.39 -0.02 0.84 16 37 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 38 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.06 1.39 7.79 -2.39 -0.02 1.37 16 41 H 0.12 1.11 7.81 -2.39 -0.02 1.10 16 42 H 0.13 1.08 4.85 -2.38 -0.01 1.07 16 43 H 0.12 1.11 7.83 -2.39 -0.02 1.09 16 44 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 45 H 0.07 1.59 6.76 -2.39 -0.02 1.57 16 46 H 0.09 3.57 8.14 -2.38 -0.02 3.55 16 47 H 0.05 2.39 7.95 -2.39 -0.02 2.37 16 48 H -0.01 -0.66 7.20 -2.39 -0.02 -0.68 16 49 H 0.02 1.04 7.57 -2.39 -0.02 1.02 16 50 H 0.27 16.14 8.31 -92.70 -0.77 15.37 16 Total: -1.00 -91.65 395.02 -0.27 -91.92 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 0.89 Total: 9.77 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: 7.05 Total: 4.36 kcal Atomic # 7 Polarization: -117.96 SS G_CDS: -10.03 Total: -127.99 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -0.05 Total: -28.37 kcal Atomic # 14 Polarization: 48.42 SS G_CDS: 1.88 Total: 50.31 kcal Total: -91.65 -0.27 -91.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272562841.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.442 kcal (2) G-P(sol) polarization free energy of solvation -91.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds