Wall clock time and date at job start Wed Apr 1 2020 04:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38388 * 119.99945 * 2 1 4 4 N 1.32124 * 119.99824 * 179.97438 * 3 2 1 5 5 C 1.32156 * 119.99824 * 359.97438 * 4 3 2 6 6 C 1.38343 * 120.00231 * 0.02562 * 5 4 3 7 7 C 1.50703 * 120.00025 * 179.97438 * 6 5 4 8 8 N 1.46900 * 109.47258 * 94.99718 * 7 6 5 9 9 C 1.47556 * 110.99903 * 69.87623 * 8 7 6 10 10 C 1.54570 * 107.28913 * 123.20328 * 9 8 7 11 11 C 1.53691 * 102.86566 * 20.97241 * 10 9 8 12 12 C 1.53218 * 111.53985 * 205.83517 * 11 10 9 13 13 C 1.54801 * 101.39201 * 261.15710 * 12 11 10 14 14 N 1.46927 * 105.54243 * 335.82730 * 13 12 11 15 15 C 1.46505 * 124.38130 * 196.74845 * 14 13 12 16 16 C 1.52997 * 109.47112 * 270.02319 * 15 14 13 17 17 C 1.50698 * 109.47243 * 179.97438 * 16 15 14 18 18 H 1.07994 * 119.99832 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99710 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00532 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99626 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47466 * 59.99846 * 21 19 17 23 23 H 1.48497 * 109.47278 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.47043 * 299.99531 * 21 19 17 25 25 C 1.34889 * 111.24280 * 16.74297 * 14 13 12 26 26 O 1.21282 * 125.21849 * 178.76092 * 25 14 13 27 27 C 1.48119 * 110.99774 * 190.81888 * 8 7 6 28 28 N 1.32123 * 120.00173 * 179.71881 * 2 1 3 29 29 H 1.09001 * 109.46953 * 90.00067 * 1 2 3 30 30 H 1.09000 * 109.47318 * 209.99665 * 1 2 3 31 31 H 1.09000 * 109.47161 * 330.00296 * 1 2 3 32 32 H 1.08006 * 120.00369 * 359.95362 * 3 2 1 33 33 H 1.08002 * 119.99977 * 179.97438 * 5 4 3 34 34 H 1.08997 * 109.47358 * 215.00303 * 7 6 5 35 35 H 1.09000 * 109.46867 * 334.99706 * 7 6 5 36 36 H 1.09001 * 109.87470 * 242.62882 * 9 8 7 37 37 H 1.09003 * 109.87663 * 3.77605 * 9 8 7 38 38 H 1.09001 * 110.73792 * 139.32415 * 10 9 8 39 39 H 1.09010 * 110.73177 * 262.62925 * 10 9 8 40 40 H 1.09001 * 111.03739 * 19.17954 * 12 11 10 41 41 H 1.08992 * 111.04137 * 143.13107 * 12 11 10 42 42 H 1.08999 * 110.23159 * 216.81027 * 13 12 11 43 43 H 1.08996 * 110.30677 * 94.87707 * 13 12 11 44 44 H 1.09006 * 109.46676 * 30.01770 * 15 14 13 45 45 H 1.08999 * 109.47109 * 150.01717 * 15 14 13 46 46 H 1.08999 * 109.46682 * 299.99975 * 16 15 14 47 47 H 1.09000 * 109.47236 * 59.99347 * 16 15 14 48 48 H 0.96997 * 120.00384 * 179.97438 * 20 19 17 49 49 H 1.08995 * 110.40183 * 333.87995 * 27 8 7 50 50 H 1.09006 * 110.39745 * 96.28514 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1990 1.1985 0.0000 4 7 3.5202 1.1985 0.0005 5 6 4.1809 0.0539 0.0015 6 6 3.4892 -1.1442 0.0015 7 6 4.2427 -2.4493 0.0021 8 7 4.3825 -2.9334 1.3820 9 6 3.0816 -3.3718 1.9229 10 6 3.2418 -4.8430 2.3691 11 6 4.7622 -4.9836 2.5450 12 6 5.2178 -6.4350 2.3618 13 6 5.3370 -6.9058 3.8316 14 7 5.5490 -5.6845 4.6203 15 6 6.0589 -5.6645 5.9936 16 6 4.8873 -5.7485 6.9740 17 6 5.4118 -5.7286 8.3866 18 1 6.4746 -5.6631 8.5670 19 6 4.5350 -5.7951 9.4485 20 7 3.2408 -5.8753 9.2287 21 14 5.1853 -5.7712 11.1995 22 1 5.9353 -4.5108 11.4319 23 1 4.0481 -5.8525 12.1510 24 1 6.0893 -6.9308 11.4076 25 6 5.2134 -4.5838 3.9165 26 8 5.2684 -3.4451 4.3304 27 6 5.3316 -4.0684 1.4527 28 7 2.1677 -1.1442 0.0056 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5138 32 1 1.6590 2.1339 -0.0008 33 1 5.2610 0.0539 0.0015 34 1 3.6956 -3.1850 -0.5874 35 1 5.2311 -2.2983 -0.4319 36 1 2.8081 -2.7530 2.7775 37 1 2.3158 -3.2999 1.1505 38 1 2.7262 -5.0184 3.3132 39 1 2.8782 -5.5220 1.5976 40 1 4.4680 -7.0157 1.8245 41 1 6.1824 -6.4815 1.8566 42 1 6.1867 -7.5793 3.9439 43 1 4.4189 -7.4025 4.1454 44 1 6.7227 -6.5155 6.1471 45 1 6.6093 -4.7392 6.1634 46 1 4.2235 -4.8976 6.8205 47 1 4.3369 -6.6738 6.8041 48 1 2.6240 -5.9225 9.9758 49 1 5.3679 -4.5933 0.4981 50 1 6.3248 -3.7164 1.7316 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272563731.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:09:04 Heat of formation + Delta-G solvation = -6.216790 kcal Electronic energy + Delta-G solvation = -30227.049449 eV Core-core repulsion = 26252.963229 eV Total energy + Delta-G solvation = -3974.086220 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.29899 -41.92669 -39.12256 -37.42382 -36.01679 -35.45207 -34.88326 -33.55720 -31.78801 -30.60599 -29.44716 -28.93753 -27.44076 -26.93893 -24.74161 -24.20184 -23.57249 -23.51516 -21.83781 -21.63177 -19.90238 -18.72703 -18.68738 -17.79855 -17.49055 -17.08540 -16.75209 -16.72750 -16.42221 -16.34023 -15.75477 -15.48696 -14.86503 -14.82109 -14.57780 -14.48906 -14.30220 -14.19275 -13.97296 -13.75431 -13.59105 -13.44031 -13.33539 -13.21879 -13.07412 -12.89347 -12.85096 -12.68823 -12.58814 -12.52643 -12.17246 -12.03573 -11.97744 -11.91059 -11.78280 -11.53627 -11.44471 -10.63660 -10.52521 -10.07032 -10.02975 -9.52322 -9.25055 -8.26308 -6.39785 -0.20994 0.14519 1.36367 1.41168 1.48599 1.63707 2.17178 2.39983 2.54652 2.98333 3.06853 3.07711 3.31935 3.35934 3.44584 3.51486 3.58731 3.80915 3.90006 4.01044 4.09211 4.20270 4.27626 4.32162 4.38541 4.40772 4.52567 4.55166 4.58262 4.62426 4.67452 4.73605 4.75049 4.78860 4.82301 4.84639 4.88038 4.94195 5.03891 5.11348 5.13262 5.22015 5.31508 5.43924 5.46641 5.59599 5.81410 5.90768 6.07653 6.13336 6.32924 6.34756 6.75732 6.82310 7.29185 7.32297 8.85798 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.013115 B = 0.002437 C = 0.002228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.413293 B =11487.338646 C =12565.037978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.071 3.929 3 C 0.038 3.962 4 N -0.460 5.460 5 C 0.046 3.954 6 C 0.085 3.915 7 C 0.106 3.894 8 N -0.540 5.540 9 C 0.057 3.943 10 C -0.112 4.112 11 C -0.103 4.103 12 C -0.099 4.099 13 C 0.091 3.909 14 N -0.625 5.625 15 C 0.143 3.857 16 C 0.026 3.974 17 C -0.547 4.547 18 H 0.067 0.933 19 C -0.001 4.001 20 N -0.934 5.934 21 Si 0.971 3.029 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.257 1.257 25 C 0.512 3.488 26 O -0.572 6.572 27 C 0.079 3.921 28 N -0.455 5.455 29 H 0.098 0.902 30 H 0.071 0.929 31 H 0.099 0.901 32 H 0.195 0.805 33 H 0.183 0.817 34 H 0.072 0.928 35 H 0.119 0.881 36 H 0.024 0.976 37 H 0.082 0.918 38 H 0.047 0.953 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.113 0.887 42 H 0.100 0.900 43 H 0.063 0.937 44 H 0.092 0.908 45 H 0.049 0.951 46 H -0.033 1.033 47 H -0.001 1.001 48 H 0.265 0.735 49 H 0.104 0.896 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.779 2.633 -27.746 27.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.070 4.070 3 C -0.122 4.122 4 N -0.174 5.174 5 C -0.113 4.113 6 C -0.056 4.056 7 C -0.022 4.022 8 N -0.265 5.265 9 C -0.071 4.071 10 C -0.151 4.151 11 C -0.107 4.107 12 C -0.137 4.137 13 C -0.030 4.030 14 N -0.357 5.357 15 C 0.022 3.978 16 C -0.012 4.012 17 C -0.585 4.585 18 H 0.085 0.915 19 C -0.199 4.199 20 N -0.573 5.573 21 Si 0.795 3.205 22 H -0.196 1.196 23 H -0.207 1.207 24 H -0.181 1.181 25 C 0.300 3.700 26 O -0.451 6.451 27 C -0.048 4.048 28 N -0.172 5.172 29 H 0.117 0.883 30 H 0.090 0.910 31 H 0.118 0.882 32 H 0.212 0.788 33 H 0.200 0.800 34 H 0.090 0.910 35 H 0.137 0.863 36 H 0.043 0.957 37 H 0.100 0.900 38 H 0.066 0.934 39 H 0.140 0.860 40 H 0.143 0.857 41 H 0.131 0.869 42 H 0.118 0.882 43 H 0.081 0.919 44 H 0.110 0.890 45 H 0.067 0.933 46 H -0.015 1.015 47 H 0.017 0.983 48 H 0.073 0.927 49 H 0.122 0.878 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.659 3.619 -27.075 27.324 hybrid contribution -0.466 -0.141 1.407 1.489 sum -1.124 3.478 -25.668 25.927 Atomic orbital electron populations 1.20775 0.85530 1.04617 1.04541 1.22861 0.99951 0.89255 0.94953 1.24090 0.90602 1.00438 0.97053 1.68450 1.09888 1.30213 1.08872 1.23830 1.02704 0.88078 0.96693 1.22355 0.90469 0.97531 0.95239 1.21186 1.00382 0.91019 0.89606 1.63453 1.08982 1.34948 1.19113 1.22667 0.91524 0.94022 0.98855 1.22581 0.92637 0.97638 1.02259 1.21539 0.97727 0.99049 0.92389 1.22593 1.05258 0.91052 0.94755 1.22444 1.02857 0.86424 0.91321 1.48836 1.64156 1.08557 1.14200 1.21318 0.96192 1.01366 0.78972 1.19187 0.93781 0.94190 0.94062 1.21532 0.93930 1.51127 0.91923 0.91468 1.26053 0.94964 0.94318 1.04536 1.70113 1.03133 1.50938 1.33152 0.85410 0.77986 0.79357 0.77761 1.19583 1.20738 1.18148 1.21014 0.76185 0.84093 0.88660 1.90675 1.55445 1.22697 1.76309 1.22733 0.95875 0.88841 0.97350 1.68109 1.08797 1.30414 1.09874 0.88324 0.91007 0.88230 0.78812 0.80038 0.91020 0.86253 0.95736 0.90014 0.93388 0.86015 0.85650 0.86876 0.88163 0.91864 0.89008 0.93290 1.01459 0.98259 0.92672 0.87786 0.90814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.17 10.19 71.24 0.73 -0.44 16 2 C 0.07 1.37 6.79 42.55 0.29 1.66 16 3 C 0.04 0.74 10.88 84.68 0.92 1.66 16 4 N -0.46 -10.82 10.50 -195.22 -2.05 -12.87 16 5 C 0.05 1.02 10.86 84.67 0.92 1.94 16 6 C 0.08 1.86 5.94 42.54 0.25 2.12 16 7 C 0.11 1.88 4.89 85.56 0.42 2.29 16 8 N -0.54 -13.32 5.15 -891.50 -4.60 -17.92 16 9 C 0.06 1.58 6.28 86.71 0.54 2.12 16 10 C -0.11 -2.75 5.94 31.36 0.19 -2.57 16 11 C -0.10 -2.55 0.67 -52.74 -0.04 -2.58 16 12 C -0.10 -1.55 6.26 31.28 0.20 -1.36 16 13 C 0.09 2.23 7.37 86.91 0.64 2.87 16 14 N -0.62 -23.22 2.95 -818.18 -2.41 -25.63 16 15 C 0.14 6.39 5.88 86.38 0.51 6.90 16 16 C 0.03 1.46 5.30 29.85 0.16 1.62 16 17 C -0.55 -32.36 9.11 25.60 0.23 -32.13 16 18 H 0.07 3.73 7.74 -2.91 -0.02 3.71 16 19 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 20 N -0.93 -59.14 13.29 21.45 0.28 -58.85 16 21 Si 0.97 45.49 29.54 68.60 2.03 47.51 16 22 H -0.27 -12.38 7.11 99.48 0.71 -11.68 16 23 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 24 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 25 C 0.51 19.88 6.73 87.36 0.59 20.46 16 26 O -0.57 -28.67 17.51 -3.04 -0.05 -28.72 16 27 C 0.08 1.61 5.53 86.22 0.48 2.08 16 28 N -0.45 -10.45 9.17 -171.51 -1.57 -12.02 16 29 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.10 0.79 8.09 -2.39 -0.02 0.77 16 32 H 0.20 2.30 8.06 -2.91 -0.02 2.27 16 33 H 0.18 3.19 8.06 -2.91 -0.02 3.17 16 34 H 0.07 1.06 7.96 -2.39 -0.02 1.04 16 35 H 0.12 1.44 7.98 -2.39 -0.02 1.42 16 36 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.08 2.01 6.46 -2.39 -0.02 1.99 16 38 H 0.05 1.49 8.00 -2.39 -0.02 1.47 16 39 H 0.12 1.93 7.74 -2.38 -0.02 1.91 16 40 H 0.13 1.16 7.62 -2.39 -0.02 1.14 16 41 H 0.11 1.19 7.97 -2.39 -0.02 1.17 16 42 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.09 3.55 8.14 -2.38 -0.02 3.53 16 45 H 0.05 2.35 7.96 -2.39 -0.02 2.34 16 46 H -0.03 -2.19 8.14 -2.39 -0.02 -2.20 16 47 H 0.00 -0.06 8.14 -2.39 -0.02 -0.07 16 48 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 49 H 0.10 1.17 7.70 -2.39 -0.02 1.16 16 50 H 0.07 1.70 8.01 -2.38 -0.02 1.68 16 Total: -1.00 -88.17 406.31 0.03 -88.13 By element: Atomic # 1 Polarization: 12.40 SS G_CDS: 0.92 Total: 13.32 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: 7.49 Total: 7.06 kcal Atomic # 7 Polarization: -116.95 SS G_CDS: -10.35 Total: -127.30 kcal Atomic # 8 Polarization: -28.67 SS G_CDS: -0.05 Total: -28.72 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.51 kcal Total: -88.17 0.03 -88.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272563731.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.916 kcal (2) G-P(sol) polarization free energy of solvation -88.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds