Wall clock time and date at job start Wed Apr 1 2020 04:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38395 * 119.99916 * 2 1 4 4 N 1.32123 * 120.00048 * 180.02562 * 3 2 1 5 5 C 1.32162 * 119.99598 * 359.97438 * 4 3 2 6 6 C 1.38339 * 120.00136 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.99648 * 179.97438 * 6 5 4 8 8 N 1.46898 * 109.46833 * 94.69910 * 7 6 5 9 9 C 1.48059 * 111.00167 * 66.05999 * 8 7 6 10 10 C 1.54258 * 106.83575 * 146.61267 * 9 8 7 11 11 C 1.54361 * 104.92094 * 358.49381 * 10 9 8 12 12 H 1.08995 * 110.04399 * 94.72086 * 11 10 9 13 13 C 1.48923 * 111.00247 * 183.07749 * 8 7 6 14 14 H 1.09000 * 112.08102 * 78.17364 * 13 8 7 15 15 C 1.53111 * 107.98478 * 314.47816 * 13 8 7 16 16 C 1.52919 * 109.19241 * 184.13026 * 15 13 8 17 17 C 1.50310 * 109.41790 * 52.12419 * 16 15 13 18 18 O 1.21282 * 118.67363 * 159.21735 * 17 16 15 19 19 N 1.33321 * 122.64405 * 339.19160 * 17 16 15 20 20 C 1.46506 * 117.35906 * 180.26391 * 19 17 16 21 21 C 1.52997 * 109.47345 * 90.00101 * 20 19 17 22 22 C 1.50698 * 109.47290 * 179.97438 * 21 20 19 23 23 H 1.08000 * 119.99879 * 0.02562 * 22 21 20 24 24 C 1.37873 * 120.00192 * 179.97438 * 22 21 20 25 25 N 1.31516 * 119.99986 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00158 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47251 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.46729 * 120.00129 * 26 24 22 29 29 H 1.48497 * 109.47421 * 240.00081 * 26 24 22 30 30 N 1.32123 * 120.00632 * 180.24533 * 2 1 3 31 31 H 1.09009 * 109.46763 * 90.00646 * 1 2 3 32 32 H 1.09000 * 109.47040 * 210.00195 * 1 2 3 33 33 H 1.09003 * 109.47912 * 330.00592 * 1 2 3 34 34 H 1.08000 * 119.99805 * 0.02562 * 3 2 1 35 35 H 1.08003 * 119.99470 * 180.02562 * 5 4 3 36 36 H 1.09003 * 109.47261 * 334.70244 * 7 6 5 37 37 H 1.08994 * 109.47237 * 214.69969 * 7 6 5 38 38 H 1.08994 * 109.98536 * 27.26130 * 9 8 7 39 39 H 1.09006 * 110.01972 * 265.97834 * 9 8 7 40 40 H 1.09002 * 110.36765 * 117.39030 * 10 9 8 41 41 H 1.08998 * 110.36241 * 239.60145 * 10 9 8 42 42 H 1.09000 * 109.51704 * 304.04530 * 15 13 8 43 43 H 1.09000 * 109.51688 * 64.21379 * 15 13 8 44 44 H 1.09004 * 109.47949 * 172.10918 * 16 15 13 45 45 H 1.09002 * 109.47838 * 292.12978 * 16 15 13 46 46 H 1.09004 * 109.46991 * 210.00355 * 20 19 17 47 47 H 1.08997 * 109.46986 * 329.99733 * 20 19 17 48 48 H 1.08999 * 109.47016 * 300.00440 * 21 20 19 49 49 H 1.09001 * 109.46918 * 59.99863 * 21 20 19 50 50 H 0.96997 * 120.00094 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.1985 0.0000 4 7 3.5201 1.1986 -0.0005 5 6 4.1809 0.0540 -0.0005 6 6 3.4892 -1.1440 -0.0005 7 6 4.2428 -2.4492 -0.0011 8 7 4.3898 -2.9302 1.3791 9 6 3.0750 -3.2833 1.9609 10 6 3.3137 -4.4698 2.9173 11 6 4.8222 -4.7761 2.8018 12 1 5.3696 -4.2608 3.5910 13 6 5.1949 -4.1823 1.4250 14 1 6.2629 -3.9864 1.3301 15 6 4.6848 -5.1130 0.3215 16 6 5.4234 -6.4491 0.4094 17 6 5.3306 -6.9800 1.8126 18 8 5.5074 -8.1652 1.9993 19 7 5.0622 -6.2003 2.8602 20 6 5.0049 -6.8387 4.1776 21 6 6.3952 -6.8169 4.8159 22 6 6.3361 -7.4731 6.1712 23 1 5.4005 -7.8668 6.5402 24 6 7.4765 -7.5719 6.9396 25 7 8.6159 -7.0929 6.4900 26 14 7.4032 -8.3846 8.6199 27 1 6.0148 -8.8365 8.8910 28 1 8.3176 -9.5544 8.6442 29 1 7.8189 -7.4097 9.6600 30 7 2.1677 -1.1441 -0.0049 31 1 -0.3633 -0.0001 -1.0278 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3635 0.8900 0.5137 34 1 1.6589 2.1338 0.0004 35 1 5.2609 0.0540 -0.0005 36 1 5.2289 -2.2992 -0.4406 37 1 3.6926 -3.1861 -0.5860 38 1 2.3840 -3.5752 1.1702 39 1 2.6714 -2.4347 2.5134 40 1 3.0606 -4.1897 3.9399 41 1 2.7262 -5.3330 2.6048 42 1 3.6152 -5.2790 0.4506 43 1 4.8687 -4.6586 -0.6521 44 1 4.9694 -7.1614 -0.2795 45 1 6.4706 -6.3036 0.1442 46 1 4.3045 -6.2973 4.8136 47 1 4.6720 -7.8707 4.0670 48 1 7.0955 -7.3583 4.1798 49 1 6.7280 -5.7849 4.9264 50 1 9.4182 -7.1621 7.0308 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272564011.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:57 Heat of formation + Delta-G solvation = 21.159692 kcal Electronic energy + Delta-G solvation = -30581.061304 eV Core-core repulsion = 26608.162218 eV Total energy + Delta-G solvation = -3972.899086 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.61002 -40.88364 -38.56791 -35.57709 -34.81797 -34.19506 -33.19309 -32.82360 -31.14125 -29.32064 -28.54282 -28.10657 -26.45712 -25.12649 -23.84085 -23.68426 -22.80635 -21.69053 -21.19210 -20.00385 -18.12379 -17.94485 -17.17853 -16.90246 -16.50563 -16.29618 -16.01143 -15.28896 -15.21606 -15.00971 -14.55693 -14.44401 -14.10312 -13.90451 -13.57159 -13.44880 -13.29051 -13.10986 -12.85109 -12.75596 -12.48255 -12.37204 -12.20371 -11.96260 -11.85412 -11.83059 -11.52647 -11.43082 -11.31159 -11.16405 -11.00455 -10.91311 -10.66899 -10.59581 -9.84273 -9.82850 -9.45667 -9.38431 -9.31431 -9.00372 -8.65033 -8.33010 -8.03949 -5.98308 -4.00786 0.41518 0.80665 3.08984 3.14265 3.33241 3.39958 3.43080 3.46802 3.55019 3.91930 3.95586 4.07413 4.30539 4.33553 4.48804 4.50477 4.61473 4.71741 4.77678 4.89068 4.96775 5.05568 5.07176 5.10082 5.12195 5.17319 5.22841 5.32590 5.37276 5.38222 5.46421 5.55103 5.65736 5.69455 5.76822 5.79952 5.92996 6.03937 6.06548 6.12065 6.21545 6.51078 6.57921 6.64569 6.89105 6.93434 6.96780 7.46861 7.66188 7.77091 8.02559 8.07620 8.39833 8.68042 9.05975 9.62820 11.13303 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016067 B = 0.002414 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.280680 B =11594.048474 C =12266.005526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.080 3.920 3 C 0.045 3.955 4 N -0.435 5.435 5 C 0.061 3.939 6 C 0.097 3.903 7 C 0.095 3.905 8 N -0.503 5.503 9 C 0.045 3.955 10 C -0.145 4.145 11 C 0.151 3.849 12 H 0.101 0.899 13 C 0.061 3.939 14 H 0.112 0.888 15 C -0.150 4.150 16 C -0.131 4.131 17 C 0.510 3.490 18 O -0.547 6.547 19 N -0.589 5.589 20 C 0.109 3.891 21 C 0.015 3.985 22 C -0.518 4.518 23 H 0.056 0.944 24 C 0.058 3.942 25 N -0.894 5.894 26 Si 0.893 3.107 27 H -0.272 1.272 28 H -0.284 1.284 29 H -0.284 1.284 30 N -0.434 5.434 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.167 0.833 35 H 0.170 0.830 36 H 0.098 0.902 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.077 0.923 44 H 0.096 0.904 45 H 0.098 0.902 46 H 0.061 0.939 47 H 0.075 0.925 48 H 0.021 0.979 49 H 0.015 0.985 50 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.628 16.887 -17.908 28.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.060 4.060 3 C -0.116 4.116 4 N -0.149 5.149 5 C -0.099 4.099 6 C -0.044 4.044 7 C -0.034 4.034 8 N -0.227 5.227 9 C -0.083 4.083 10 C -0.184 4.184 11 C 0.045 3.955 12 H 0.119 0.881 13 C -0.047 4.047 14 H 0.130 0.870 15 C -0.189 4.189 16 C -0.172 4.172 17 C 0.298 3.702 18 O -0.425 6.425 19 N -0.319 5.319 20 C -0.012 4.012 21 C -0.022 4.022 22 C -0.557 4.557 23 H 0.075 0.925 24 C -0.143 4.143 25 N -0.533 5.533 26 Si 0.721 3.279 27 H -0.197 1.197 28 H -0.210 1.210 29 H -0.210 1.210 30 N -0.151 5.151 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.184 0.816 35 H 0.187 0.813 36 H 0.117 0.883 37 H 0.084 0.916 38 H 0.074 0.926 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.114 0.886 45 H 0.116 0.884 46 H 0.080 0.920 47 H 0.094 0.906 48 H 0.040 0.960 49 H 0.033 0.967 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.104 16.746 -17.501 28.029 hybrid contribution -0.282 -0.832 0.512 1.017 sum -14.386 15.915 -16.989 27.365 Atomic orbital electron populations 1.20691 0.87744 1.04048 1.03413 1.22310 0.98407 0.89488 0.95824 1.23600 0.90967 0.99179 0.97838 1.68468 1.08773 1.29650 1.07966 1.23585 1.01945 0.87983 0.96399 1.22067 0.90292 0.96714 0.95370 1.21149 0.99419 0.91498 0.91368 1.65037 1.13195 1.28072 1.16383 1.22864 0.90511 0.97496 0.97446 1.22937 0.96901 0.97911 1.00678 1.21287 0.95309 0.81486 0.97430 0.88138 1.23160 0.99302 0.87911 0.94369 0.86989 1.22253 1.01062 0.95796 0.99779 1.21576 1.03164 0.97421 0.95032 1.19943 0.77078 0.86539 0.86662 1.90738 1.49871 1.16090 1.85761 1.47096 1.68724 1.07066 1.09059 1.21932 1.01368 0.97699 0.80200 1.19337 0.90485 0.97217 0.95205 1.21127 0.95040 1.38049 1.01438 0.92548 1.24995 0.95447 0.95598 0.98299 1.69981 0.99497 1.46209 1.37586 0.86517 0.78124 0.79174 0.84070 1.19703 1.20997 1.21037 1.68112 1.08367 1.29469 1.09152 0.90060 0.90084 0.90190 0.81624 0.81261 0.88329 0.91618 0.92578 0.90763 0.90251 0.90838 0.90938 0.90465 0.88552 0.88391 0.92006 0.90629 0.96030 0.96672 0.93063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.49 10.19 36.00 0.37 -0.12 16 2 C 0.08 0.64 6.79 -82.41 -0.56 0.08 16 3 C 0.04 0.35 10.88 -17.37 -0.19 0.16 16 4 N -0.44 -4.26 10.50 -13.05 -0.14 -4.39 16 5 C 0.06 0.55 10.86 -17.37 -0.19 0.36 16 6 C 0.10 0.88 5.85 -82.42 -0.48 0.40 16 7 C 0.09 0.77 4.17 -4.97 -0.02 0.75 16 8 N -0.50 -5.04 5.28 -223.64 -1.18 -6.22 16 9 C 0.04 0.47 4.92 -2.53 -0.01 0.46 16 10 C -0.14 -1.74 5.76 -25.36 -0.15 -1.88 16 11 C 0.15 2.11 3.15 -67.47 -0.21 1.90 16 12 H 0.10 1.57 8.14 -51.93 -0.42 1.14 16 13 C 0.06 0.66 3.47 -65.74 -0.23 0.44 16 14 H 0.11 1.20 8.14 -51.93 -0.42 0.78 16 15 C -0.15 -1.46 4.02 -26.72 -0.11 -1.57 16 16 C -0.13 -1.62 6.07 -28.11 -0.17 -1.79 16 17 C 0.51 9.19 7.47 -11.82 -0.09 9.10 16 18 O -0.55 -12.51 16.19 5.56 0.09 -12.42 16 19 N -0.59 -10.35 2.42 -166.39 -0.40 -10.75 16 20 C 0.11 2.33 5.03 -4.04 -0.02 2.31 16 21 C 0.02 0.41 5.28 -27.89 -0.15 0.26 16 22 C -0.52 -14.89 9.11 -34.44 -0.31 -15.21 16 23 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 24 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 25 N -0.89 -27.32 13.29 55.43 0.74 -26.58 16 26 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 16 27 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 28 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 29 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 30 N -0.43 -4.17 9.71 -5.56 -0.05 -4.22 16 31 H 0.08 0.31 8.14 -51.92 -0.42 -0.11 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.24 8.09 -51.93 -0.42 -0.18 16 34 H 0.17 0.80 8.06 -52.49 -0.42 0.37 16 35 H 0.17 1.17 8.06 -52.48 -0.42 0.74 16 36 H 0.10 0.61 8.05 -51.93 -0.42 0.20 16 37 H 0.07 0.53 6.22 -51.93 -0.32 0.21 16 38 H 0.06 0.58 7.23 -51.93 -0.38 0.21 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.07 0.91 7.97 -51.93 -0.41 0.50 16 42 H 0.07 0.75 6.57 -51.93 -0.34 0.40 16 43 H 0.08 0.58 6.59 -51.93 -0.34 0.24 16 44 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 45 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.06 1.22 7.81 -51.93 -0.41 0.81 16 47 H 0.08 1.75 7.14 -51.93 -0.37 1.38 16 48 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 395.98 15.07 5.97 5.97 Total: -1.00 -35.45 395.98 -10.64 -46.09 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -8.02 Total: -1.71 kcal Atomic # 6 Polarization: -0.15 SS G_CDS: -2.62 Total: -2.76 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: -1.04 Total: -52.18 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.09 Total: -12.42 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.45 -10.64 -46.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272564011.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.253 kcal (2) G-P(sol) polarization free energy of solvation -35.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds