Wall clock time and date at job start Wed Apr 1 2020 04:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38395 * 119.99916 * 2 1 4 4 N 1.32123 * 120.00048 * 180.02562 * 3 2 1 5 5 C 1.32162 * 119.99598 * 359.97438 * 4 3 2 6 6 C 1.38339 * 120.00136 * 0.02562 * 5 4 3 7 7 C 1.50706 * 119.99648 * 179.97438 * 6 5 4 8 8 N 1.46898 * 109.46833 * 94.69910 * 7 6 5 9 9 C 1.48059 * 111.00167 * 66.05999 * 8 7 6 10 10 C 1.54258 * 106.83575 * 146.61267 * 9 8 7 11 11 C 1.54361 * 104.92094 * 358.49381 * 10 9 8 12 12 H 1.08995 * 110.04399 * 94.72086 * 11 10 9 13 13 C 1.48923 * 111.00247 * 183.07749 * 8 7 6 14 14 H 1.09000 * 112.08102 * 78.17364 * 13 8 7 15 15 C 1.53111 * 107.98478 * 314.47816 * 13 8 7 16 16 C 1.52919 * 109.19241 * 184.13026 * 15 13 8 17 17 C 1.50310 * 109.41790 * 52.12419 * 16 15 13 18 18 O 1.21282 * 118.67363 * 159.21735 * 17 16 15 19 19 N 1.33321 * 122.64405 * 339.19160 * 17 16 15 20 20 C 1.46506 * 117.35906 * 180.26391 * 19 17 16 21 21 C 1.52997 * 109.47345 * 90.00101 * 20 19 17 22 22 C 1.50698 * 109.47290 * 179.97438 * 21 20 19 23 23 H 1.08000 * 119.99879 * 0.02562 * 22 21 20 24 24 C 1.37873 * 120.00192 * 179.97438 * 22 21 20 25 25 N 1.31516 * 119.99986 * 0.02562 * 24 22 21 26 26 Si 1.86798 * 120.00158 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47251 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.46729 * 120.00129 * 26 24 22 29 29 H 1.48497 * 109.47421 * 240.00081 * 26 24 22 30 30 N 1.32123 * 120.00632 * 180.24533 * 2 1 3 31 31 H 1.09009 * 109.46763 * 90.00646 * 1 2 3 32 32 H 1.09000 * 109.47040 * 210.00195 * 1 2 3 33 33 H 1.09003 * 109.47912 * 330.00592 * 1 2 3 34 34 H 1.08000 * 119.99805 * 0.02562 * 3 2 1 35 35 H 1.08003 * 119.99470 * 180.02562 * 5 4 3 36 36 H 1.09003 * 109.47261 * 334.70244 * 7 6 5 37 37 H 1.08994 * 109.47237 * 214.69969 * 7 6 5 38 38 H 1.08994 * 109.98536 * 27.26130 * 9 8 7 39 39 H 1.09006 * 110.01972 * 265.97834 * 9 8 7 40 40 H 1.09002 * 110.36765 * 117.39030 * 10 9 8 41 41 H 1.08998 * 110.36241 * 239.60145 * 10 9 8 42 42 H 1.09000 * 109.51704 * 304.04530 * 15 13 8 43 43 H 1.09000 * 109.51688 * 64.21379 * 15 13 8 44 44 H 1.09004 * 109.47949 * 172.10918 * 16 15 13 45 45 H 1.09002 * 109.47838 * 292.12978 * 16 15 13 46 46 H 1.09004 * 109.46991 * 210.00355 * 20 19 17 47 47 H 1.08997 * 109.46986 * 329.99733 * 20 19 17 48 48 H 1.08999 * 109.47016 * 300.00440 * 21 20 19 49 49 H 1.09001 * 109.46918 * 59.99863 * 21 20 19 50 50 H 0.96997 * 120.00094 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1989 1.1985 0.0000 4 7 3.5201 1.1986 -0.0005 5 6 4.1809 0.0540 -0.0005 6 6 3.4892 -1.1440 -0.0005 7 6 4.2428 -2.4492 -0.0011 8 7 4.3898 -2.9302 1.3791 9 6 3.0750 -3.2833 1.9609 10 6 3.3137 -4.4698 2.9173 11 6 4.8222 -4.7761 2.8018 12 1 5.3696 -4.2608 3.5910 13 6 5.1949 -4.1823 1.4250 14 1 6.2629 -3.9864 1.3301 15 6 4.6848 -5.1130 0.3215 16 6 5.4234 -6.4491 0.4094 17 6 5.3306 -6.9800 1.8126 18 8 5.5074 -8.1652 1.9993 19 7 5.0622 -6.2003 2.8602 20 6 5.0049 -6.8387 4.1776 21 6 6.3952 -6.8169 4.8159 22 6 6.3361 -7.4731 6.1712 23 1 5.4005 -7.8668 6.5402 24 6 7.4765 -7.5719 6.9396 25 7 8.6159 -7.0929 6.4900 26 14 7.4032 -8.3846 8.6199 27 1 6.0148 -8.8365 8.8910 28 1 8.3176 -9.5544 8.6442 29 1 7.8189 -7.4097 9.6600 30 7 2.1677 -1.1441 -0.0049 31 1 -0.3633 -0.0001 -1.0278 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3635 0.8900 0.5137 34 1 1.6589 2.1338 0.0004 35 1 5.2609 0.0540 -0.0005 36 1 5.2289 -2.2992 -0.4406 37 1 3.6926 -3.1861 -0.5860 38 1 2.3840 -3.5752 1.1702 39 1 2.6714 -2.4347 2.5134 40 1 3.0606 -4.1897 3.9399 41 1 2.7262 -5.3330 2.6048 42 1 3.6152 -5.2790 0.4506 43 1 4.8687 -4.6586 -0.6521 44 1 4.9694 -7.1614 -0.2795 45 1 6.4706 -6.3036 0.1442 46 1 4.3045 -6.2973 4.8136 47 1 4.6720 -7.8707 4.0670 48 1 7.0955 -7.3583 4.1798 49 1 6.7280 -5.7849 4.9264 50 1 9.4182 -7.1621 7.0308 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001272564011.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:17:56 Heat of formation + Delta-G solvation = -3.931317 kcal Electronic energy + Delta-G solvation = -30582.149332 eV Core-core repulsion = 26608.162218 eV Total energy + Delta-G solvation = -3973.987114 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 344.195 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.37672 -41.88225 -39.79466 -36.97947 -35.64944 -35.30664 -34.52208 -34.11285 -32.29969 -30.94703 -29.29157 -28.96894 -27.20385 -26.95368 -25.04227 -24.37445 -23.61167 -23.10733 -22.55759 -21.02190 -19.28612 -18.66848 -18.61080 -17.92526 -17.72884 -17.49814 -17.16130 -16.64208 -16.15541 -16.11581 -15.99847 -15.48266 -15.13930 -14.86657 -14.60936 -14.55087 -14.28604 -14.20941 -13.90750 -13.70503 -13.55909 -13.45405 -13.25380 -13.06071 -12.91842 -12.83942 -12.79668 -12.58617 -12.50009 -12.47588 -12.28710 -11.98819 -11.95228 -11.85194 -11.74146 -11.66737 -11.38840 -10.60399 -10.57571 -10.03567 -9.98863 -9.62309 -9.41718 -8.23759 -6.35796 -0.17081 0.18913 1.37564 1.39179 1.52245 1.66977 2.02723 2.39879 2.59966 2.96341 3.09632 3.12791 3.37192 3.40236 3.45380 3.58132 3.66368 3.80700 3.86643 4.04695 4.09848 4.11615 4.20695 4.30306 4.39297 4.41789 4.43378 4.49598 4.59862 4.66265 4.69736 4.76310 4.79327 4.81110 4.83519 4.87576 4.91387 4.92892 5.00380 5.04546 5.17007 5.23303 5.28999 5.47098 5.50810 5.57551 5.69130 5.80551 5.91142 6.16751 6.37696 6.62220 6.79426 6.87300 7.24047 7.33470 8.88734 Molecular weight = 344.20amu Principal moments of inertia in cm(-1) A = 0.016067 B = 0.002414 C = 0.002282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1742.280680 B =11594.048474 C =12266.005526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.073 3.927 3 C 0.041 3.959 4 N -0.460 5.460 5 C 0.050 3.950 6 C 0.086 3.914 7 C 0.096 3.904 8 N -0.507 5.507 9 C 0.059 3.941 10 C -0.137 4.137 11 C 0.139 3.861 12 H 0.079 0.921 13 C 0.069 3.931 14 H 0.118 0.882 15 C -0.139 4.139 16 C -0.120 4.120 17 C 0.498 3.502 18 O -0.605 6.605 19 N -0.586 5.586 20 C 0.125 3.875 21 C 0.030 3.970 22 C -0.542 4.542 23 H 0.062 0.938 24 C 0.000 4.000 25 N -0.932 5.932 26 Si 0.969 3.031 27 H -0.261 1.261 28 H -0.280 1.280 29 H -0.273 1.273 30 N -0.453 5.453 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.193 0.807 35 H 0.184 0.816 36 H 0.122 0.878 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.067 0.933 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.115 0.885 44 H 0.112 0.888 45 H 0.113 0.887 46 H 0.079 0.921 47 H 0.054 0.946 48 H -0.024 1.024 49 H -0.002 1.002 50 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.064 18.325 -18.931 30.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.068 4.068 3 C -0.119 4.119 4 N -0.174 5.174 5 C -0.109 4.109 6 C -0.054 4.054 7 C -0.032 4.032 8 N -0.230 5.230 9 C -0.069 4.069 10 C -0.177 4.177 11 C 0.034 3.966 12 H 0.097 0.903 13 C -0.039 4.039 14 H 0.136 0.864 15 C -0.177 4.177 16 C -0.160 4.160 17 C 0.289 3.711 18 O -0.488 6.488 19 N -0.315 5.315 20 C 0.003 3.997 21 C -0.008 4.008 22 C -0.581 4.581 23 H 0.080 0.920 24 C -0.198 4.198 25 N -0.572 5.572 26 Si 0.793 3.207 27 H -0.184 1.184 28 H -0.206 1.206 29 H -0.198 1.198 30 N -0.170 5.170 31 H 0.111 0.889 32 H 0.092 0.908 33 H 0.119 0.881 34 H 0.210 0.790 35 H 0.201 0.799 36 H 0.140 0.860 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.090 0.910 43 H 0.133 0.867 44 H 0.130 0.870 45 H 0.132 0.868 46 H 0.097 0.903 47 H 0.073 0.927 48 H -0.005 1.005 49 H 0.016 0.984 50 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.557 18.230 -18.546 30.303 hybrid contribution 0.153 -1.209 0.827 1.473 sum -15.405 17.021 -17.719 28.999 Atomic orbital electron populations 1.20773 0.85708 1.04740 1.04339 1.22801 0.99787 0.89169 0.95029 1.24080 0.90601 1.00393 0.96838 1.68483 1.09839 1.30233 1.08866 1.23854 1.02762 0.87906 0.96403 1.22187 0.90386 0.97055 0.95796 1.21259 1.00785 0.91166 0.90017 1.65015 1.12650 1.27249 1.18113 1.22700 0.90951 0.96227 0.97053 1.22844 0.95078 0.98596 1.01141 1.21478 0.96709 0.79077 0.99287 0.90288 1.23072 0.99873 0.88421 0.92535 0.86446 1.22233 1.00463 0.93961 1.01055 1.21587 1.04764 0.98966 0.90674 1.21112 0.75368 0.85854 0.88802 1.90705 1.52403 1.18749 1.86899 1.47104 1.68286 1.08594 1.07539 1.21434 0.98397 0.97430 0.82489 1.19114 0.92328 0.95044 0.94355 1.21562 0.95580 1.38461 1.02483 0.91956 1.26002 0.94901 0.96047 1.02838 1.70115 1.00338 1.47290 1.39449 0.85339 0.78669 0.78109 0.78569 1.18442 1.20605 1.19825 1.68136 1.08732 1.30400 1.09754 0.88888 0.90788 0.88088 0.78987 0.79882 0.86020 0.90907 0.91901 0.91437 0.90620 0.91023 0.90976 0.86695 0.86993 0.86847 0.90253 0.92700 1.00533 0.98399 0.92696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.73 10.19 71.23 0.73 0.00 16 2 C 0.07 1.02 6.79 42.55 0.29 1.31 16 3 C 0.04 0.57 10.88 84.69 0.92 1.49 16 4 N -0.46 -8.34 10.50 -195.22 -2.05 -10.39 16 5 C 0.05 0.82 10.86 84.67 0.92 1.74 16 6 C 0.09 1.40 5.85 42.54 0.25 1.65 16 7 C 0.10 1.28 4.17 85.56 0.36 1.63 16 8 N -0.51 -9.10 5.28 -861.46 -4.55 -13.65 16 9 C 0.06 1.14 4.92 86.51 0.43 1.57 16 10 C -0.14 -3.22 5.76 31.48 0.18 -3.04 16 11 C 0.14 3.91 3.15 46.33 0.15 4.06 16 12 H 0.08 2.56 8.14 -2.39 -0.02 2.54 16 13 C 0.07 1.39 3.47 45.07 0.16 1.55 16 14 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 15 C -0.14 -2.29 4.02 30.60 0.12 -2.17 16 16 C -0.12 -2.74 6.07 29.70 0.18 -2.56 16 17 C 0.50 18.30 7.47 87.76 0.66 18.96 16 18 O -0.61 -28.98 16.19 -3.03 -0.05 -29.03 16 19 N -0.59 -21.22 2.42 -799.52 -1.94 -23.16 16 20 C 0.13 5.61 5.03 86.38 0.43 6.05 16 21 C 0.03 1.65 5.28 29.85 0.16 1.81 16 22 C -0.54 -32.17 9.11 25.60 0.23 -31.94 16 23 H 0.06 3.53 7.74 -2.91 -0.02 3.51 16 24 C 0.00 0.00 5.46 84.65 0.46 0.47 16 25 N -0.93 -58.53 13.29 21.45 0.28 -58.25 16 26 Si 0.97 45.63 29.54 68.60 2.03 47.66 16 27 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 28 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 29 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 30 N -0.45 -7.85 9.71 -171.51 -1.67 -9.52 16 31 H 0.09 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.10 0.31 8.09 -2.39 -0.02 0.29 16 34 H 0.19 1.36 8.06 -2.91 -0.02 1.34 16 35 H 0.18 2.21 8.06 -2.91 -0.02 2.19 16 36 H 0.12 1.06 8.05 -2.39 -0.02 1.04 16 37 H 0.07 0.89 6.22 -2.39 -0.01 0.88 16 38 H 0.06 1.16 7.23 -2.39 -0.02 1.15 16 39 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 40 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.07 1.72 7.97 -2.39 -0.02 1.70 16 42 H 0.07 1.26 6.57 -2.39 -0.02 1.24 16 43 H 0.11 1.16 6.59 -2.39 -0.02 1.14 16 44 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 45 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 46 H 0.08 3.22 7.81 -2.38 -0.02 3.21 16 47 H 0.05 2.68 7.14 -2.39 -0.02 2.66 16 48 H -0.02 -1.53 8.14 -2.39 -0.02 -1.55 16 49 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 50 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -81.15 395.98 -0.40 -81.54 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: 0.93 Total: 12.22 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: 6.62 Total: 2.57 kcal Atomic # 7 Polarization: -105.04 SS G_CDS: -9.92 Total: -114.96 kcal Atomic # 8 Polarization: -28.98 SS G_CDS: -0.05 Total: -29.03 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -81.15 -0.40 -81.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272564011.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.612 kcal (2) G-P(sol) polarization free energy of solvation -81.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds